Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239743670
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo
sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo ... 797 0.0
gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1 ... 394 e-109
gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1 ... 286 3e-77
gi|133922562 phosphoglucomutase 5 [Homo sapiens] 216 3e-56
gi|21361621 phosphoglucomutase 1 [Homo sapiens] 145 6e-35
gi|34335253 disks large-associated protein 4 isoform a [Homo sap... 39 0.008
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 37 0.030
gi|222418604 hypothetical protein LOC257407 [Homo sapiens] 37 0.039
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 35 0.088
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 35 0.11
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 35 0.11
gi|151101459 SAPS domain family, member 1 [Homo sapiens] 35 0.15
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 34 0.25
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 33 0.57
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 33 0.57
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 32 0.74
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 32 0.97
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 32 1.3
gi|239754359 PREDICTED: similar to heat shock 70kD protein bindi... 31 1.7
gi|239748906 PREDICTED: hypothetical protein XP_002346852 [Homo ... 31 1.7
gi|239742930 PREDICTED: hypothetical protein XP_002342689 [Homo ... 31 1.7
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 31 1.7
gi|57222570 codanin 1 [Homo sapiens] 31 1.7
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens] 31 2.2
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens] 31 2.2
gi|150378478 PR domain containing 8 [Homo sapiens] 31 2.2
gi|150378439 PR domain containing 8 [Homo sapiens] 31 2.2
gi|27734799 REST corepressor 2 [Homo sapiens] 31 2.2
gi|50345997 E1A binding protein p300 [Homo sapiens] 30 2.8
>gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo
sapiens]
Length = 386
Score = 797 bits (2059), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MNLLQRQIVFRQTCCPSGNTGFKDSSSGLGWLPEGDKEELCFQPNIRTRTTACRHAPAGT 60
MNLLQRQIVFRQTCCPSGNTGFKDSSSGLGWLPEGDKEELCFQPNIRTRTTACRHAPAGT
Sbjct: 1 MNLLQRQIVFRQTCCPSGNTGFKDSSSGLGWLPEGDKEELCFQPNIRTRTTACRHAPAGT 60
Query: 61 PALCLSVVAPLAHLGGNPENDSRLFQGLHARPVRTELNQPEKEVSDSDSTQECSVIPKEG 120
PALCLSVVAPLAHLGGNPENDSRLFQGLHARPVRTELNQPEKEVSDSDSTQECSVIPKEG
Sbjct: 61 PALCLSVVAPLAHLGGNPENDSRLFQGLHARPVRTELNQPEKEVSDSDSTQECSVIPKEG 120
Query: 121 SSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQD 180
SSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQD
Sbjct: 121 SSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQD 180
Query: 181 SSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYP 240
SSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYP
Sbjct: 181 SSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYP 240
Query: 241 PNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLST 300
PNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLST
Sbjct: 241 PNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLST 300
Query: 301 PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGEIFLHVMKIKAVHEEFEKVQ 360
PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGEIFLHVMKIKAVHEEFEKVQ
Sbjct: 301 PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGEIFLHVMKIKAVHEEFEKVQ 360
Query: 361 QPVALTLTELLSLLPDPSRMGPEAFC 386
QPVALTLTELLSLLPDPSRMGPEAFC
Sbjct: 361 QPVALTLTELLSLLPDPSRMGPEAFC 386
>gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 259
Score = 394 bits (1011), Expect = e-109
Identities = 198/228 (86%), Positives = 204/228 (89%), Gaps = 9/228 (3%)
Query: 121 SSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQD 180
+SKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKP ASQPYSQEVDNIWGRRSSRIFQD
Sbjct: 15 ASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEVDNIWGRRSSRIFQD 74
Query: 181 SSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYP 240
SSL RP EPQQDRPGGAAEGS IPVRTVPTAP E RRPTGLFQGQRSYP
Sbjct: 75 SSLDSLRPR---------EPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQGQRSYP 125
Query: 241 PNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLST 300
PNFIRSALSSV LRDRQGRTTG GSDGR+FGRTAVEV GPMAAANGIGRLIIGQNG+LST
Sbjct: 126 PNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANGIGRLIIGQNGILST 185
Query: 301 PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGEIFLHVMK 348
PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANG + ++ K
Sbjct: 186 PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGVLNGNISK 233
>gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 237
Score = 286 bits (731), Expect = 3e-77
Identities = 144/166 (86%), Positives = 146/166 (87%), Gaps = 9/166 (5%)
Query: 121 SSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQD 180
+SKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKP ASQPYSQEVDNIWGRRSSRIFQD
Sbjct: 15 ASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEVDNIWGRRSSRIFQD 74
Query: 181 SSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYP 240
SSL RP EPQQDRPGGAAEGS IPVRTVPTAP E RRPTGLFQGQRSYP
Sbjct: 75 SSLDSLRPR---------EPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQGQRSYP 125
Query: 241 PNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANG 286
PNFIRSALSSV LRDRQGRTTG GSDGR+FGRTAVEV GPMAAANG
Sbjct: 126 PNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANG 171
>gi|133922562 phosphoglucomutase 5 [Homo sapiens]
Length = 567
Score = 216 bits (550), Expect = 3e-56
Identities = 110/140 (78%), Positives = 118/140 (84%), Gaps = 9/140 (6%)
Query: 210 EGSPIPVRTVPTAPREH---------RRPTGLFQGQRSYPPNFIRSALSSVGLRDRQGRT 260
EGSPIPV TVPTAP E RRPTGLF+GQR+Y PNFI+S LSS+ LRDRQG T
Sbjct: 2 EGSPIPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCT 61
Query: 261 TGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLSTPAVSCIIRKIKAAGGIILTA 320
GSDGR+F RTA+E+V MAAANGIGRLIIGQNG+LSTPAVSCIIRKIKAAGGIILTA
Sbjct: 62 MVVGSDGRYFSRTAIEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTA 121
Query: 321 SHCPGGPGGEFGVKFNVANG 340
SHCPGGPGGEFGVKFNVANG
Sbjct: 122 SHCPGGPGGEFGVKFNVANG 141
>gi|21361621 phosphoglucomutase 1 [Homo sapiens]
Length = 562
Score = 145 bits (366), Expect = 6e-35
Identities = 69/114 (60%), Positives = 88/114 (77%)
Query: 227 RRPTGLFQGQRSYPPNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANG 286
R+ +FQ +Y NFI+S +S+V RQ T G DGRF+ + A++++ +AAANG
Sbjct: 23 RKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIARIAAANG 82
Query: 287 IGRLIIGQNGVLSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANG 340
IGRL+IGQNG+LSTPAVSCIIRKIKA GGIILTASH PGGP G+FG+KFN++NG
Sbjct: 83 IGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNG 136
>gi|34335253 disks large-associated protein 4 isoform a [Homo
sapiens]
Length = 989
Score = 38.9 bits (89), Expect = 0.008
Identities = 58/215 (26%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 75 GGNPENDSRLFQGLHARPVRTELNQPEKEVSDSDSTQECSVIPKEGSSK--GKTDAKPFI 132
G + E DS Q L P L+ S S C V K+ +T +KPFI
Sbjct: 520 GCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSS-----CLVAYKKTPPPVPPRTTSKPFI 574
Query: 133 NCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQDSSLGWRRPPAGC 192
+ TV + +Q +Y D SQ + EV + G +S DSS RPP+
Sbjct: 575 SV-TVQSSTESAQDTYLD--------SQDHKSEVTSQSGLSNSSDSLDSST---RPPSVT 622
Query: 193 --GFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYPPNFIRSALSS 250
G PAPE + P AA S G S+P + LSS
Sbjct: 623 RGGVAPAPEAPEPPPKHAALKSE----------------QGTLTSSESHPEAAPKRKLSS 666
Query: 251 VGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAAN 285
+G+++R R S+ G A++V+ P + ++
Sbjct: 667 IGIQERTRRNGSHLSEDN--GPKAIDVMAPSSESS 699
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 37.0 bits (84), Expect = 0.030
Identities = 49/185 (26%), Positives = 64/185 (34%), Gaps = 26/185 (14%)
Query: 117 PKEGSSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSR 176
P+ ++G + + KT + C L P P QE G+R+
Sbjct: 115 PRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQE----GGQRA-- 168
Query: 177 IFQDSSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGS-PIPVRTV-------PTAPREHRR 228
IFQ RPP G P P Q+ GG + P+P T PTAP R
Sbjct: 169 IFQ-------RPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVR 221
Query: 229 PTGLFQGQRSYPPNFIRSA----LSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAA 284
G +G P R+A G R R+ AG G F + P A
Sbjct: 222 EPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGF-HGGEKAAAPRAPG 280
Query: 285 NGIGR 289
G GR
Sbjct: 281 GGGGR 285
>gi|222418604 hypothetical protein LOC257407 [Homo sapiens]
Length = 295
Score = 36.6 bits (83), Expect = 0.039
Identities = 51/190 (26%), Positives = 73/190 (38%), Gaps = 20/190 (10%)
Query: 151 QTLYKPAASQPYSQEVDNIWGRRSSRIFQDSSLGWRRPPAGCGFPPAPEPQQDRPGGAA- 209
Q L + A + V +W R SR R A FPP EP +PGGAA
Sbjct: 21 QALVEAAGGRGQVLLVGELWEREQSRALL-------RDFARAVFPP--EPGAAKPGGAAA 71
Query: 210 EGS-PIPVRTVPTAPREHRRPTGLFQGQRSY--PPNFIRSALSSVGLRDRQGRTTGAGSD 266
EG+ P R A R R+ P F+ SS+ R+ + R D
Sbjct: 72 EGAGPGAARGAQRAARAAGAAGAAAAAARAIRSPLVFVLCRASSLAAREPRRRLREMLRD 131
Query: 267 GRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLSTPAVSCIIRKI--KAAGGIILTASHCP 324
R R +VG + A G + +L ++R + + AGG + A++CP
Sbjct: 132 VRGRRRAGAALVGVLVAEAGPEDAVAPGLRLLEA-----LLRAVFGRQAGGPVQAAAYCP 186
Query: 325 GGPGGEFGVK 334
G P V+
Sbjct: 187 GLPASCLAVQ 196
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 165 EVDNIWGRRSSRIFQDSSLGWRRPPAGCGFPPAPEPQQDRPG-------------GAAEG 211
E WGR+S R +DSS G RR G P +P+P + + G + +
Sbjct: 539 EPGQAWGRQSPRRLEDSSNGERRACWAWG-PSSPKPGEAQNGRRRSRMDEATWYLDSDDS 597
Query: 212 SPIPVRTVPTA-----------PREHRRPTGLFQGQRSYPPNFIRSAL 248
SP+ + P A P E +RP +G S P I+ AL
Sbjct: 598 SPLGSPSTPPALNGNPPRPSLEPEEPKRPVPAERGSSSGTPKLIQRAL 645
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 24/143 (16%)
Query: 172 RRSSRIFQDSSLGWRRP---------PAGCGFPPAPEPQQDRPG---------GAAEGSP 213
RR ++ ++LG RP P G PAP P+ PG GAA
Sbjct: 109 RRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDR 168
Query: 214 IPVRTVP---TAPREHRRPTGLFQG---QRSYPPNFIRSALSSVGLRDRQGRTTGAGSDG 267
P RT P A RRP G G + P +A R+ + G G
Sbjct: 169 APARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAG 228
Query: 268 RFFGRTAVEVVGPMAAANGIGRL 290
R AV G A G GRL
Sbjct: 229 RVGRTRAVPSCGAPAVGTGPGRL 251
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 24/143 (16%)
Query: 172 RRSSRIFQDSSLGWRRP---------PAGCGFPPAPEPQQDRPG---------GAAEGSP 213
RR ++ ++LG RP P G PAP P+ PG GAA
Sbjct: 109 RRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDR 168
Query: 214 IPVRTVP---TAPREHRRPTGLFQG---QRSYPPNFIRSALSSVGLRDRQGRTTGAGSDG 267
P RT P A RRP G G + P +A R+ + G G
Sbjct: 169 APARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAG 228
Query: 268 RFFGRTAVEVVGPMAAANGIGRL 290
R AV G A G GRL
Sbjct: 229 RVGRTRAVPSCGAPAVGTGPGRL 251
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 24/143 (16%)
Query: 172 RRSSRIFQDSSLGWRRP---------PAGCGFPPAPEPQQDRPG---------GAAEGSP 213
RR ++ ++LG RP P G PAP P+ PG GAA
Sbjct: 109 RRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDR 168
Query: 214 IPVRTVP---TAPREHRRPTGLFQG---QRSYPPNFIRSALSSVGLRDRQGRTTGAGSDG 267
P RT P A RRP G G + P +A R+ + G G
Sbjct: 169 APARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAG 228
Query: 268 RFFGRTAVEVVGPMAAANGIGRL 290
R AV G A G GRL
Sbjct: 229 RVGRTRAVPSCGAPAVGTGPGRL 251
>gi|151101459 SAPS domain family, member 1 [Homo sapiens]
Length = 881
Score = 34.7 bits (78), Expect = 0.15
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 11/119 (9%)
Query: 196 PAPEPQQDRPGGAAEGSPIPVRTVPTAPR---EHRRPTG--LFQGQRSYPPNFIRSALSS 250
P+P PQ P A P+P PT+PR E TG QG S P +L+S
Sbjct: 701 PSPGPQPPGPSWTATFDPVPT-DAPTSPRVSGEEELHTGPPAPQGPLSVPQGLPTQSLAS 759
Query: 251 VGLRD-----RQGRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLSTPAVS 304
RD Q T + G E P A IG L +G+ S P+ S
Sbjct: 760 PPARDALQLRSQDPTPPSAPQEATEGSKVTEPSAPCQALVSIGDLQATFHGIRSAPSSS 818
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.9 bits (76), Expect = 0.25
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 188 PPAGCGFPPAPEPQQDRPGGAAEG-SPIPVRTVPTAPREHRRPTGLFQGQRSYPPNF--- 243
PPA PPA P P G+ G +P P V +AP PT G + PP
Sbjct: 125 PPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP 184
Query: 244 --IRSALSSVGLRDRQGRTTGAGSDGRFFG 271
+A+ G +QG G G+ G
Sbjct: 185 PPPPAAVPGPGPGPKQGPGPGGPKGGKMPG 214
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 32.7 bits (73), Expect = 0.57
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 196 PAPE-PQQDRPGGAAEGSPIP---VRTVPTAPREHRRPTGLFQGQRSYPPNFIRSALSSV 251
PAP P PG P+P +R P PR H R TG Q + PP A ++
Sbjct: 541 PAPRAPWPPFPGVFLHPRPLPRVQLRAPPRPPRPHGRRTGGPQATQPRPP---ARAQATQ 597
Query: 252 GLRDRQGRTTG 262
G R+ Q RT G
Sbjct: 598 GGREGQARTLG 608
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 32.7 bits (73), Expect = 0.57
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 195 PPAPEPQQDRPGGAAEGSPIPVRTVPTAPR---EHRRPTGLFQGQRSYPPNFIRSALSSV 251
P P Q RPG A G P+ V + P P H+ P + GQR+ P ++ + +
Sbjct: 405 PAGTPPPQVRPGSA--GIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFI 462
Query: 252 GLRDRQGRTTG 262
G+ TG
Sbjct: 463 GMSSAPRELTG 473
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 32.3 bits (72), Expect = 0.74
Identities = 44/172 (25%), Positives = 64/172 (37%), Gaps = 29/172 (16%)
Query: 77 NPENDSRLFQGLH-ARPVRTELNQ-------PEKEVSDSDSTQECSVIPKEGSSKGKTDA 128
NP+N L + L ++P R + PE+E + +TQ PK S
Sbjct: 1277 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ-----PKRPMSIPIIPD 1331
Query: 129 KPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQDS----SLG 184
P ++ ++ + Y S L Y D L P+ SQ S D G + + + +
Sbjct: 1332 IPIVDAQSGED--YDSFLMYSDDVLRSPSGSQRPSVSDDTGCGWKFEPLLGEELDLRRVT 1389
Query: 185 WRRPP-------AGCGFPP---APEPQQDRPGGAAEGSPIPVRTVPTAPREH 226
WR PP A G AP D G +G +P P P EH
Sbjct: 1390 WRLPPELIPRLSASSGRSSDAEAPHGPPDDGGAGGKGGSLPRSATPGPPGEH 1441
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.97
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 196 PAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRS--YPPNFIRSALSSVGL 253
P P P+Q+R G + P P AP R P L +G+ + PP+ R AL S L
Sbjct: 194 PKPLPEQERSGASGRCLPAPAAFSAAAP-ARRPPACLPEGEDAPVAPPSSARPALPSFLL 252
Query: 254 RD------RQGRTTGAGS 265
R R+ R G+G+
Sbjct: 253 RPSGYLAARRQRGPGSGA 270
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 156 PAASQPYSQEVDNIWGRRSSRIFQDSSLGWRRPPAGCGFP-PAPEPQQDRPGGAAEGSPI 214
PAA+ P WG SS + +G + P +P P P P P P+
Sbjct: 136 PAAAGPLGP-----WGSMSSGPWAPG-MGGQYPTPNMPYPSPGPYPAPPPPQAPGAAPPV 189
Query: 215 PVRTVPTA----PREHRRPTGLFQGQRSYP 240
P TVP P + PTG + YP
Sbjct: 190 PWGTVPPGAWGPPAPYPAPTGSYPTPGLYP 219
>gi|239754359 PREDICTED: similar to heat shock 70kD protein binding
protein [Homo sapiens]
Length = 204
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 199 EPQQDRPGGAAEGSPIPVRTVPTAPREHRRP---------TGLFQGQRS 238
EP D P +G P TV TAPR R TG+F G+RS
Sbjct: 90 EPDTDAPQEMGDGRKAPDSTVQTAPRSLPRSAQQPRFSQNTGIFSGRRS 138
>gi|239748906 PREDICTED: hypothetical protein XP_002346852 [Homo
sapiens]
Length = 204
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 199 EPQQDRPGGAAEGSPIPVRTVPTAPREHRRP---------TGLFQGQRS 238
EP D P +G P TV TAPR R TG+F G+RS
Sbjct: 90 EPDTDAPQEMGDGRKAPDSTVQTAPRSLPRSAQQPRFSQNTGIFSGRRS 138
>gi|239742930 PREDICTED: hypothetical protein XP_002342689 [Homo
sapiens]
Length = 204
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 199 EPQQDRPGGAAEGSPIPVRTVPTAPREHRRP---------TGLFQGQRS 238
EP D P +G P TV TAPR R TG+F G+RS
Sbjct: 90 EPDTDAPQEMGDGRKAPDSTVQTAPRSLPRSAQQPRFSQNTGIFSGRRS 138
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 168 NIWGRRSSRIFQDS-SLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSP------IPVRTV- 219
++WG+ + + LGW + PA P PE +++ GA G+P P +
Sbjct: 871 SLWGKEDESLLDEEFELGWVQGPA---LTPVPEEEEEEEEGAPIGTPRDPGDGCPSPDIP 927
Query: 220 PTAPREHRRP 229
P P H RP
Sbjct: 928 PEPPPTHLRP 937
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 31.2 bits (69), Expect = 1.7
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 210 EGSPIPVRTVPTAPREHRRPTGLFQGQRS-----YPPNFIRSALSSVGLRDRQGRTTGAG 264
+G P P +T + RP G +G R +PP +S + L R GR G G
Sbjct: 67 QGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPG 126
Query: 265 SDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLSTPAVS 304
GR E V + GR + G +G S P+++
Sbjct: 127 PARERGGRGLEEGVSGESLPGAGGRRLRG-SGSPSRPSLT 165
>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 30.8 bits (68), Expect = 2.2
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 182 SLGWRRPPAGCGFPPAPEPQQDRPGGA-AEGSPIPVRTVPTAPRE--------HRRPTGL 232
SLG P A P P Q RP G+ + + +P+ +P+ PRE H P G
Sbjct: 102 SLGHTNPLAASSSAWRPPPGQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLG- 160
Query: 233 FQGQRSYPPNFIRSALSSVGLRDRQGR 259
Q S P + LS L R R
Sbjct: 161 --EQDSVLPRRSLAELSEASLAPRSAR 185
>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 30.8 bits (68), Expect = 2.2
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 182 SLGWRRPPAGCGFPPAPEPQQDRPGGA-AEGSPIPVRTVPTAPRE--------HRRPTGL 232
SLG P A P P Q RP G+ + + +P+ +P+ PRE H P G
Sbjct: 102 SLGHTNPLAASSSAWRPPPGQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLG- 160
Query: 233 FQGQRSYPPNFIRSALSSVGLRDRQGR 259
Q S P + LS L R R
Sbjct: 161 --EQDSVLPRRSLAELSEASLAPRSAR 185
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 30.8 bits (68), Expect = 2.2
Identities = 30/104 (28%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 196 PAPEPQQDRPGGAAEGSPI-PVRTVPTAPREHRRPTGLFQGQRSYPPNFIRSALSSVGLR 254
P+P P+ P AA GS P RE G G P + S S G
Sbjct: 237 PSPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRG---GSSCSPAQSLSSGSGSGGGG 293
Query: 255 DRQ-------GRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLI 291
Q G TG G R F A E G G GR +
Sbjct: 294 GHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFV 337
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 30.8 bits (68), Expect = 2.2
Identities = 30/104 (28%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 196 PAPEPQQDRPGGAAEGSPI-PVRTVPTAPREHRRPTGLFQGQRSYPPNFIRSALSSVGLR 254
P+P P+ P AA GS P RE G G P + S S G
Sbjct: 237 PSPSPESSNPSAAAGGSSAKPSTDFHNLARELENSRG---GSSCSPAQSLSSGSGSGGGG 293
Query: 255 DRQ-------GRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLI 291
Q G TG G R F A E G G GR +
Sbjct: 294 GHQEAELSPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFV 337
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 195 PPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQ--------RSYPPNFIRS 246
PPAP P P ++ P+ +PTAP R+P L QG+ PP IR
Sbjct: 434 PPAPPPPPP-PTSLSQPPPLLRPPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLIRP 492
Query: 247 ALSS 250
AL++
Sbjct: 493 ALAA 496
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 195 PPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGL----FQGQRSYPPNFIRSALSS 250
P A +PQQ + + +P T P P + P +GQ S PP+ + ++S
Sbjct: 905 PSADQPQQQPRSQQSTAASVPTPTAPLLPPQPATPLSQPAVSIEGQVSNPPSTSSTEVNS 964
Query: 251 VGLRDRQ 257
+ ++Q
Sbjct: 965 QAIAEKQ 971
Score = 28.9 bits (63), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 182 SLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAP 223
S+G ++PPA P P P PG ++ P R PT P
Sbjct: 848 SIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPP 889
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,129,022
Number of Sequences: 37866
Number of extensions: 1017612
Number of successful extensions: 4068
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 3984
Number of HSP's gapped (non-prelim): 172
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.