Guide to the Human Genome
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Name: LOC100288076 Sequence: fasta or formatted (243aa) NCBI GI: 239743632
Description:

PREDICTED: hypothetical protein XP_002342918

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         30           3
 C cysteine            3.3          8           1
 D aspartate           4.5         11           1
 E glutamate           6.6         16           2
 F phenylalanine       1.2          3           1
 G glycine            14.4         35           3
 H histidine           5.3         13           1
 I isoleucine          0.4          1           1
 K lysine              3.3          8           1
 L leucine             9.9         24           3
 M methionine          0.4          1           1
 N asparagine          0.8          2           1
 P proline             7.4         18           3
 Q glutamine           4.5         11           2
 R arginine            6.2         15           2
 S serine              4.5         11           1
 T threonine           2.9          7           1
 V valine             10.7         26           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342918 
LOC100133575          0.994   PREDICTED: hypothetical protein 
SNTB2                 0.019   basic beta 2 syntrophin 
LOC100288508          0.015   PREDICTED: hypothetical protein XP_002343798 
ARX                   0.015   aristaless related homeobox 
HMCN2                 0.015   PREDICTED: hemicentin 2 
HMCN2                 0.015   PREDICTED: hemicentin 2 
HMCN2                 0.015   PREDICTED: hemicentin 2 
ELN                   0.013   elastin isoform e precursor 
ELN                   0.013   elastin isoform c precursor 
ELN                   0.013   elastin isoform b precursor 
POU3F1                0.013   POU domain, class 3, transcription factor 1 
LOC100288476          0.013   PREDICTED: hypothetical protein XP_002343815 
LILRB3                0.010   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.010   leukocyte immunoglobulin-like receptor, subfamily B...
ELN                   0.010   elastin isoform d precursor 
ELN                   0.010   elastin isoform a precursor 
LOC100292390          0.006   PREDICTED: hypothetical protein 
LOC100291400          0.006   PREDICTED: hypothetical protein XP_002348330 
LOC100292150          0.006   PREDICTED: hypothetical protein 
LOC100289316          0.006   PREDICTED: hypothetical protein 
LOC100290302          0.006   PREDICTED: hypothetical protein XP_002346480 
LOC100289316          0.006   PREDICTED: hypothetical protein XP_002343619 
LOC100287337          0.006   PREDICTED: hypothetical protein XP_002342320 
RAVER1                0.006   RAVER1 
LOC100293953          0.006   PREDICTED: hypothetical protein 
LOC729986             0.006   PREDICTED: hypothetical protein 
LOC100290158          0.006   PREDICTED: hypothetical protein XP_002347492 
LOC729986             0.006   PREDICTED: hypothetical protein 
LOC100288144          0.006   PREDICTED: hypothetical protein XP_002343302 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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