Guide to the Human Genome
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Name: LOC100289563 Sequence: fasta or formatted (283aa) NCBI GI: 239745167
Description:

PREDICTED: hypothetical protein XP_002343386

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         12           1
 C cysteine            0.4          1           1
 D aspartate           3.9         11           2
 E glutamate           5.3         15           2
 F phenylalanine       4.6         13           2
 G glycine             3.2          9           2
 H histidine           0.4          1           1
 I isoleucine          9.2         26           1
 K lysine             12.4         35           2
 L leucine            10.6         30           2
 M methionine          2.1          6           1
 N asparagine          7.1         20           2
 P proline             4.2         12           1
 Q glutamine           4.9         14           1
 R arginine            3.9         11           1
 S serine              6.4         18           2
 T threonine           5.3         15           2
 V valine              4.2         12           1
 W tryptophan          3.5         10           3
 Y tyrosine            4.2         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343386 
LOC100290636          1.000   PREDICTED: hypothetical protein XP_002347566 
LOC100291812          0.996   PREDICTED: hypothetical protein XP_002344872 
LOC100130764          0.414   PREDICTED: p150-like 
LOC100130764          0.414   PREDICTED: p150-like 
LOC100130764          0.412   PREDICTED: p150-like 
FLJ10088              0.214   PREDICTED: hypothetical protein 
FLJ10088              0.214   PREDICTED: hypothetical protein 
FLJ10088              0.214   PREDICTED: hypothetical protein 
LOC100293629          0.212   PREDICTED: similar to putative p150 
LOC100291256          0.212   PREDICTED: hypothetical protein XP_002346845 
LOC100289365          0.212   PREDICTED: hypothetical protein XP_002342695 
TNRC6B                0.009   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.009   trinucleotide repeat containing 6B isoform 1 
SPG11                 0.009   spatacsin isoform 2 
SPG11                 0.009   spatacsin isoform 1 
ANPEP                 0.009   membrane alanine aminopeptidase precursor 
LMO7                  0.007   LIM domain only 7 isoform 1 
RIF1                  0.005   RAP1 interacting factor 1 
TTC21B                0.005   tetratricopeptide repeat domain 21B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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