Search of human proteins with 239743495

Search of human proteins with 239743495

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo
sapiens]
         (70 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo ...   153   2e-38
gi|169173154 PREDICTED: hypothetical protein [Homo sapiens]           148   1e-36
gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo sapi...   148   1e-36
gi|149944551 defensin, beta 131 [Homo sapiens]                        145   5e-36
gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapi...   144   2e-35
gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapi...   143   3e-35
gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo sapi...   143   3e-35
gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo sapi...   143   3e-35
gi|23503331 defensin, beta 123 precursor [Homo sapiens]                35   0.010
gi|82734219 beta-defensin 114 [Homo sapiens]                           35   0.017
gi|22748611 defensin, beta 106A precursor [Homo sapiens]               33   0.063
gi|103485143 defensin, beta 106B precursor [Homo sapiens]              33   0.063
gi|18250304 beta defensin 129 precursor [Homo sapiens]                 32   0.082
gi|16905373 beta-defensin 118 [Homo sapiens]                           31   0.24 
gi|74136827 beta-defensin 134 [Homo sapiens]                           30   0.53 
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]                27   2.7  
gi|103485139 defensin, beta 104A precursor [Homo sapiens]              27   4.5  
gi|103485137 defensin, beta 104B precursor [Homo sapiens]              27   4.5  
gi|50344744 beta-defensin 108B [Homo sapiens]                          26   5.9  
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  

>gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo
          sapiens]
          Length = 70

 Score =  153 bits (387), Expect = 2e-38
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70


>gi|169173154 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 70

 Score =  148 bits (373), Expect = 1e-36
 Identities = 68/70 (97%), Positives = 68/70 (97%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70


>gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo
          sapiens]
          Length = 70

 Score =  148 bits (373), Expect = 1e-36
 Identities = 68/70 (97%), Positives = 68/70 (97%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70


>gi|149944551 defensin, beta 131 [Homo sapiens]
          Length = 70

 Score =  145 bits (367), Expect = 5e-36
 Identities = 67/70 (95%), Positives = 67/70 (95%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLM TVPPARSFISNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70


>gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo
          sapiens]
          Length = 70

 Score =  144 bits (362), Expect = 2e-35
 Identities = 66/70 (94%), Positives = 66/70 (94%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPP RSFISNDECPSEYYHCRLKCNADEH I YCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPRRSFISNDECPSEYYHCRLKCNADEHAITYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70


>gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo
          sapiens]
          Length = 70

 Score =  143 bits (361), Expect = 3e-35
 Identities = 65/70 (92%), Positives = 66/70 (94%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPP RSF SNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70


>gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo
          sapiens]
          Length = 70

 Score =  143 bits (361), Expect = 3e-35
 Identities = 65/70 (92%), Positives = 66/70 (94%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPP RSF SNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70


>gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo
          sapiens]
          Length = 70

 Score =  143 bits (361), Expect = 3e-35
 Identities = 65/70 (92%), Positives = 66/70 (94%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          MRVLFFVFGVLSLMSTVPP RSF SNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1  MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60

Query: 61 IIEIDGQKKW 70
          II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70


>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
          Length = 67

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICC 57
          M++L     VL L+S + P         C + Y  CR +C+  E V  YC    +CC
Sbjct: 1  MKLLLLTLTVLLLLSQLTPG----GTQRCWNLYGKCRYRCSKKERVYVYCINNKMCC 53


>gi|82734219 beta-defensin 114 [Homo sapiens]
          Length = 69

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAY-FSICCKL 59
          MR+ +++  +  +   +P   + ++ D C   Y  C+  C   E  I  C+    ICC  
Sbjct: 1  MRIFYYLHFLCYVTFILPATCTLVNADRCTKRYGRCKRDCLESEKQIDICSLPRKICCTE 60

Query: 60 KIIEID 65
          K+ E D
Sbjct: 61 KLYEED 66


>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
          Length = 65

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCK 58
          MR   F+F VL  ++   PA++   +++C      C+  C  +E +I  C     CC+
Sbjct: 1  MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCR 55


>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
          Length = 65

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCK 58
          MR   F+F VL  ++   PA++   +++C      C+  C  +E +I  C     CC+
Sbjct: 1  MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCR 55


>gi|18250304 beta defensin 129 precursor [Homo sapiens]
          Length = 183

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
          M++LF +F  L L   V     FI    C      CR  CN DE  I+ C     C   K
Sbjct: 1  MKLLFPIFASLMLQYQVNT--EFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPK 58

Query: 61 IIEI 64
          ++++
Sbjct: 59 VVKL 62


>gi|16905373 beta-defensin 118 [Homo sapiens]
          Length = 123

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICC 57
          M++L     +L L+  V PA S     +C +   HCR +C   E V   C     CC
Sbjct: 1  MKLLLLALPMLVLLPQVIPAYS--GEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACC 55


>gi|74136827 beta-defensin 134 [Homo sapiens]
          Length = 66

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYH--CRLKCNADEHVIRYCAYFSICC 57
          M+ L  VF  L L   V    + +S++     Y +  CRL+C   E ++ YC +   CC
Sbjct: 1  MKPLLVVFVFLFLWDPVLAGINSLSSEMHKKCYKNGICRLECYESEMLVAYCMFQLECC 59


>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
          Length = 1541

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)

Query: 27  DECPSEYY--HCRLKCN 41
           D CP  YY  HCR KCN
Sbjct: 596 DGCPKGYYGKHCRKKCN 612


>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
          Length = 72

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHVIRYCAYFSICCKL 59
          M+ L  +  +  L+    P RS    D  C      CR KC + E+ I  C     CC  
Sbjct: 1  MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60

Query: 60 K 60
          K
Sbjct: 61 K 61


>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
          Length = 72

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHVIRYCAYFSICCKL 59
          M+ L  +  +  L+    P RS    D  C      CR KC + E+ I  C     CC  
Sbjct: 1  MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60

Query: 60 K 60
          K
Sbjct: 61 K 61


>gi|50344744 beta-defensin 108B [Homo sapiens]
          Length = 73

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICC 57
          MR+   +F +   MS V PAR     + C      CR  C   E  +  C     CC
Sbjct: 1  MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56


>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 73

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 1  MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICC 57
          MR+   +F +   MS V PAR     + C      CR  C   E  +  C     CC
Sbjct: 1  MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSRPCC 56


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.143    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,770,039
Number of Sequences: 37866
Number of extensions: 96448
Number of successful extensions: 261
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 20
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.