Guide to the Human Genome
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Name: LOC100292708 Sequence: fasta or formatted (44aa) NCBI GI: 239758160
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4          5           1
 C cysteine            4.5          2           1
 D aspartate           2.3          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            11.4          5           1
 H histidine           4.5          2           1
 I isoleucine          2.3          1           1
 K lysine              0.0          0           0
 L leucine            13.6          6           1
 M methionine          2.3          1           1
 N asparagine          2.3          1           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            2.3          1           1
 S serine             15.9          7           1
 T threonine          13.6          6           1
 V valine              6.8          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            6.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC402509             1.000   PREDICTED: similar to solute carrier family 29 (nuc...
LOC402509             1.000   PREDICTED: similar to solute carrier family 29 (nuc...
LOC100291422          0.985   PREDICTED: hypothetical protein XP_002346925 
SLC29A4               0.955   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.955   solute carrier family 29 (nucleoside transporters),...
LOC100132308          0.939   PREDICTED: similar to solute carrier family 29 (nuc...
LOC100132308          0.939   PREDICTED: similar to solute carrier family 29 (nuc...
SLC22A7               0.030   solute carrier family 22 member 7 isoform b 
SLC22A7               0.030   solute carrier family 22 member 7 isoform a 
ARMC10                0.015   SVH protein isoform f 
ARMC10                0.015   SVH protein isoform d 
ARMC10                0.015   SVH protein isoform e 
ARMC10                0.015   SVH protein isoform c 
ARMC10                0.015   SVH protein isoform b 
ARMC10                0.015   SVH protein isoform a 
LOC389137             0.015   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.015   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.015   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.015   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.015   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.015   PREDICTED: similar to SVH protein isoform 2 
ARMCX3                0.015   armadillo repeat containing, X-linked 3 
ARMCX3                0.015   armadillo repeat containing, X-linked 3 
ARMCX3                0.015   armadillo repeat containing, X-linked 3 
C15orf60              0.015   hypothetical protein LOC283677 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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