Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132308 Sequence: fasta or formatted (329aa) NCBI GI: 239743192
Description:

PREDICTED: similar to solute carrier family 29 (nucleoside transporters), member 4

Not currently referenced in the text

Other entries for this name:
alt mRNA {329aa} PREDICTED: similar to solute carrier family 29 (nucleoside transp...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         26           2
 C cysteine            3.6         12           1
 D aspartate           2.7          9           1
 E glutamate           3.3         11           2
 F phenylalanine       4.9         16           2
 G glycine             8.5         28           2
 H histidine           3.6         12           2
 I isoleucine          4.9         16           1
 K lysine              1.2          4           1
 L leucine            13.7         45           3
 M methionine          3.3         11           1
 N asparagine          1.8          6           1
 P proline             6.7         22           1
 Q glutamine           0.6          2           1
 R arginine            5.8         19           2
 S serine              8.8         29           1
 T threonine           4.9         16           2
 V valine              8.8         29           2
 W tryptophan          1.8          6           1
 Y tyrosine            3.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to solute carrier family 29 (nuc... 
LOC100132308          1.000   PREDICTED: similar to solute carrier family 29 (nuc...
LOC402509             0.969   PREDICTED: similar to solute carrier family 29 (nuc...
LOC402509             0.969   PREDICTED: similar to solute carrier family 29 (nuc...
SLC29A4               0.885   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.885   solute carrier family 29 (nucleoside transporters),...
LOC100291422          0.097   PREDICTED: hypothetical protein XP_002346925 
LOC100292708          0.095   PREDICTED: hypothetical protein 
SLC29A2               0.077   solute carrier family 29 (nucleoside transporters), ...
SLC29A1               0.058   equilibrative nucleoside transporter 1 
SLC29A1               0.058   equilibrative nucleoside transporter 1 
SLC29A1               0.058   equilibrative nucleoside transporter 1 
SLC29A1               0.058   equilibrative nucleoside transporter 1 
SLC29A1               0.058   equilibrative nucleoside transporter 1 
SLC29A3               0.040   solute carrier family 29 (nucleoside transporters),...
SLC22A2               0.018   solute carrier family 22 member 2 
IL20RB                0.008   interleukin 20 receptor beta precursor 
POU3F3                0.008   POU class 3 homeobox 3 
AMAC1                 0.005   acyl-malonyl condensing enzyme 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press