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Search of human proteins with 239743129
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo
sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo ... 385 e-107
gi|239508786 PREDICTED: similar to HSPC047 protein [Homo sapiens] 385 e-107
gi|239743313 PREDICTED: hypothetical protein XP_002342790 [Homo ... 350 5e-97
gi|169170602 PREDICTED: hypothetical protein [Homo sapiens] 350 5e-97
gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo ... 346 6e-96
gi|239508988 PREDICTED: similar to HSPC047 protein [Homo sapiens] 346 6e-96
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 29 2.0
gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens] 29 2.6
gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens] 29 2.6
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 28 3.3
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 28 4.4
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 28 5.7
gi|46409304 glutamate-rich 1 [Homo sapiens] 28 5.7
gi|38348336 inter-alpha (globulin) inhibitor H5-like [Homo sapiens] 27 9.7
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 27 9.7
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 27 9.7
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 27 9.7
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 27 9.7
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 27 9.7
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 27 9.7
gi|195972892 fatty acid amide hydrolase 2 [Homo sapiens] 27 9.7
>gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo
sapiens]
Length = 182
Score = 385 bits (988), Expect = e-107
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MIYAFGICCKMTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCIS 60
MIYAFGICCKMTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCIS
Sbjct: 1 MIYAFGICCKMTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCIS 60
Query: 61 LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA 120
LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA
Sbjct: 61 LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA 120
Query: 121 SANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWR 180
SANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWR
Sbjct: 121 SANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWR 180
Query: 181 YC 182
YC
Sbjct: 181 YC 182
>gi|239508786 PREDICTED: similar to HSPC047 protein [Homo sapiens]
Length = 182
Score = 385 bits (988), Expect = e-107
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MIYAFGICCKMTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCIS 60
MIYAFGICCKMTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCIS
Sbjct: 1 MIYAFGICCKMTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCIS 60
Query: 61 LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA 120
LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA
Sbjct: 61 LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA 120
Query: 121 SANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWR 180
SANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWR
Sbjct: 121 SANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWR 180
Query: 181 YC 182
YC
Sbjct: 181 YC 182
>gi|239743313 PREDICTED: hypothetical protein XP_002342790 [Homo
sapiens]
Length = 172
Score = 350 bits (897), Expect = 5e-97
Identities = 167/171 (97%), Positives = 168/171 (98%)
Query: 11 MTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 70
MTQ QGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 71 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLNRSMG 130
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLG LQTGKPQALLASANPL+RSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGALQTGKPQALLASANPLSRSMG 120
Query: 131 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWRY 181
PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHG LGNRCLPRCWRY
Sbjct: 121 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGGLGNRCLPRCWRY 171
>gi|169170602 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 350 bits (897), Expect = 5e-97
Identities = 167/171 (97%), Positives = 168/171 (98%)
Query: 11 MTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 70
MTQ QGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 71 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLNRSMG 130
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLG LQTGKPQALLASANPL+RSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGALQTGKPQALLASANPLSRSMG 120
Query: 131 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWRY 181
PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHG LGNRCLPRCWRY
Sbjct: 121 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGGLGNRCLPRCWRY 171
>gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo
sapiens]
Length = 172
Score = 346 bits (888), Expect = 6e-96
Identities = 166/171 (97%), Positives = 167/171 (97%)
Query: 11 MTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 70
MTQ QGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 71 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLNRSMG 130
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPL+RSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
Query: 131 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWRY 181
PPDHHLTTLILISL TPFPGLLSSGCFSLTLTL LDHG LGNRCLPRCWRY
Sbjct: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRY 171
>gi|239508988 PREDICTED: similar to HSPC047 protein [Homo sapiens]
Length = 172
Score = 346 bits (888), Expect = 6e-96
Identities = 166/171 (97%), Positives = 167/171 (97%)
Query: 11 MTQSQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 70
MTQ QGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK
Sbjct: 1 MTQRQGSGGEVEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLK 60
Query: 71 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLNRSMG 130
KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPL+RSMG
Sbjct: 61 KYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLASANPLSRSMG 120
Query: 131 PPDHHLTTLILISLETPFPGLLSSGCFSLTLTLPLDHGRLGNRCLPRCWRY 181
PPDHHLTTLILISL TPFPGLLSSGCFSLTLTL LDHG LGNRCLPRCWRY
Sbjct: 121 PPDHHLTTLILISLYTPFPGLLSSGCFSLTLTLQLDHGGLGNRCLPRCWRY 171
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 29.3 bits (64), Expect = 2.0
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 127 RSMGPPDHHLTTLILISLETPFPGLLSS-GCFSLTLTLPLD--HGRLGNRCLPRCW 179
+S+G T+ +L+ T P L SS G + +T+PLD GRLG++ PR W
Sbjct: 8 QSLGNSSPVKTSPLLVPSLTYAPHLHSSLGTLWVEVTIPLDFSRGRLGSQESPRSW 63
>gi|150421681 ATPase, class VI, type 11A isoform b [Homo sapiens]
Length = 1191
Score = 28.9 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 54 IVYLCISLNFSRIKKLKKYTWPG-PTRDSP 82
IVYLCI ++ + I + KY W P RD P
Sbjct: 298 IVYLCILISKALINTVLKYMWQSEPFRDEP 327
>gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]
Length = 1134
Score = 28.9 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 54 IVYLCISLNFSRIKKLKKYTWPG-PTRDSP 82
IVYLCI ++ + I + KY W P RD P
Sbjct: 298 IVYLCILISKALINTVLKYMWQSEPFRDEP 327
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 28.5 bits (62), Expect = 3.3
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 43 RCGVCGGSLSCIVYLCISLN-FSRIKKLKKYTW------PGPTRDSPNASLQPGRAKFAF 95
+C VC S + L + N S + KLK+ P PT N + A+
Sbjct: 1546 KCTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAY 1605
Query: 96 SHASHTPLHSQLGELQTGKPQALLASANPLNRSMGPPDHHLTTLILISLETPFPGLLSSG 155
S +S +H + QT A L +A+ + G ++ I +S TP P + +SG
Sbjct: 1606 SQSSTLEIHMRSVLHQTKARAAKLEAASGSSNGTGN-----SSSISLSSSTPSP-VSTSG 1659
Query: 156 CFSLTLTLPLDHG 168
+ T + P G
Sbjct: 1660 SNTFTTSNPSSAG 1672
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 28.1 bits (61), Expect = 4.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 101 TPLHSQLGELQTGKPQALLASANPLNRSMGPPDH 134
+P S G LQTGKP A + +M PP H
Sbjct: 477 SPRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSH 510
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 5.7
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 15/59 (25%)
Query: 21 VEMRQEVEGRGRGSHELIITDKRCGVCGGSLSCIVYLCISLNFSRIKKLKKYTWPGPTR 79
+E E++G RG L+ CGVCGG+L+ SL S I++ + PG TR
Sbjct: 424 LEYLMELDGGRRG---LV-----CGVCGGALA-------SLKMSTIERHIRRRHPGSTR 467
>gi|46409304 glutamate-rich 1 [Homo sapiens]
Length = 443
Score = 27.7 bits (60), Expect = 5.7
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 61 LNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKPQALLA 120
LNF + + + Y + G +RD+ +A+L + ASH+ L S + L K LL
Sbjct: 341 LNFLKSTQ-EMYFYDGVSRDAASAALADAAEELLDRLASHSMLPSDVSILYHMKTLLLLQ 399
Query: 121 SANPLNRSMG--------PPDH 134
L ++ PPDH
Sbjct: 400 DTERLKHALEMFPEHCTMPPDH 421
>gi|38348336 inter-alpha (globulin) inhibitor H5-like [Homo sapiens]
Length = 1313
Score = 26.9 bits (58), Expect = 9.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 97 HASHTPLHSQLGELQTGKPQALLASANPLNRSMGPPDHHLTTLILISLETPFPGLLSSGC 156
H TPL + + P++L N ++ S GP T+++ L PF L G
Sbjct: 880 HMPQTPLPPRPDRPRPPLPESLSTFPNTISSSTGPSSTTTTSVLGEPLPMPFTPTLPPGR 939
Query: 157 F 157
F
Sbjct: 940 F 940
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 26.9 bits (58), Expect = 9.7
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 51 LSCIVYLCISLNFSRIKKLKKYTWPGP-TRDSPNASLQPGRAKF-AFSHASHTPLHSQLG 108
LSC+++ C L FS +K K T P T+ A+L P + F A ++ TP + G
Sbjct: 7 LSCLIFSC--LTFSWLKIWGKMTDSKPITKSKSEANLIPSQEPFPASDNSGETPQRNGEG 64
Query: 109 ELQTGKPQALLASANPLNRSMGPPD 133
P + A P + GP D
Sbjct: 65 HTLPKTP----SQAEPASHK-GPKD 84
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 26.9 bits (58), Expect = 9.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 76 GPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQTGKP-QALLASANPLNRSMGPPDH 134
G T SP+A+L G+ + + TP+ + G P AL + + +MGPP
Sbjct: 23 GSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSG 82
Query: 135 HLTTLILISLETP 147
L I+L P
Sbjct: 83 ALAAPPGINLVAP 95
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 26.9 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 75 PGPTRDSPNASLQPGRAKFAFSHASHTPLHSQ 106
P P R +P+AS P RA F SH S+
Sbjct: 36 PSPARPAPSASPSPSRAAGPFLPPSHASTSSR 67
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 26.9 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 75 PGPTRDSPNASLQPGRAKFAFSHASHTPLHSQ 106
P P R +P+AS P RA F SH S+
Sbjct: 36 PSPARPAPSASPSPSRAAGPFLPPSHASTSSR 67
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 26.9 bits (58), Expect = 9.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 60 SLNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQ 111
SL+ SR K T P P P+ S P + F S +H+PLHS LQ
Sbjct: 403 SLSSSRSSTPAK-TQPAP----PHISHHPSASPFPLSLPNHSPLHSFTPTLQ 449
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 26.9 bits (58), Expect = 9.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 60 SLNFSRIKKLKKYTWPGPTRDSPNASLQPGRAKFAFSHASHTPLHSQLGELQ 111
SL+ SR K T P P P+ S P + F S +H+PLHS LQ
Sbjct: 403 SLSSSRSSTPAK-TQPAP----PHISHHPSASPFPLSLPNHSPLHSFTPTLQ 449
>gi|195972892 fatty acid amide hydrolase 2 [Homo sapiens]
Length = 532
Score = 26.9 bits (58), Expect = 9.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 99 SHTPLHSQLGELQTGKPQALLASANPLNRSM--GPPDHHLTTLILISLETPFPGLLSSGC 156
++T + S LG T P L A PL + GP + HLT + LE F G + G
Sbjct: 472 AYTGVFSALGLPVTQCPLGLNAKGLPLGIQVVAGPFNDHLTLAVAQYLEKTFGGWVCPGK 531
Query: 157 F 157
F
Sbjct: 532 F 532
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,558,705
Number of Sequences: 37866
Number of extensions: 418407
Number of successful extensions: 974
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 24
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.