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Search of human proteins with 239743040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
(573 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo sap... 1177 0.0
gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo sap... 1172 0.0
gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo sap... 1172 0.0
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 40 0.004
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 40 0.004
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 37 0.064
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 37 0.064
gi|125987588 leukocyte immunoglobulin-like receptor, subfamily B... 36 0.11
gi|125987585 leukocyte immunoglobulin-like receptor, subfamily B... 36 0.11
gi|124378039 SEC16 homolog A [Homo sapiens] 36 0.11
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 35 0.14
gi|11386183 WAS protein family, member 2 [Homo sapiens] 35 0.24
gi|18959210 WIRE protein [Homo sapiens] 35 0.24
gi|153791670 keratin 76 [Homo sapiens] 34 0.32
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens] 34 0.32
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 33 0.54
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 33 0.54
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 33 0.54
gi|50345997 E1A binding protein p300 [Homo sapiens] 33 0.54
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 33 0.54
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 33 0.54
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 33 0.54
gi|41349454 proline arginine-rich end leucine-rich repeat protei... 33 0.54
gi|4506041 proline arginine-rich end leucine-rich repeat protein... 33 0.54
gi|30039694 zinc finger protein 598 [Homo sapiens] 33 0.54
gi|4504831 potassium voltage-gated channel, subfamily H, member ... 33 0.71
gi|27437001 potassium voltage-gated channel, subfamily H, member... 33 0.71
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 33 0.71
gi|45827734 small proline-rich protein 1A [Homo sapiens] 33 0.71
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 32 1.2
>gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 1177 bits (3044), Expect = 0.0
Identities = 573/573 (100%), Positives = 573/573 (100%)
Query: 1 MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP 60
MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP
Sbjct: 1 MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP 60
Query: 61 PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV 120
PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV
Sbjct: 61 PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV 120
Query: 121 RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM 180
RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM
Sbjct: 121 RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM 180
Query: 181 IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG 240
IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG
Sbjct: 181 IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG 240
Query: 241 ERSLGLENKGEGRSPLAAGEGLLRIESGDGTFGISENVDAAFFCFLRDPSGASPPPLPLK 300
ERSLGLENKGEGRSPLAAGEGLLRIESGDGTFGISENVDAAFFCFLRDPSGASPPPLPLK
Sbjct: 241 ERSLGLENKGEGRSPLAAGEGLLRIESGDGTFGISENVDAAFFCFLRDPSGASPPPLPLK 300
Query: 301 ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI 360
ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI
Sbjct: 301 ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI 360
Query: 361 GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL 420
GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL
Sbjct: 361 GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL 420
Query: 421 RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP 480
RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP
Sbjct: 421 RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP 480
Query: 481 RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM 540
RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM
Sbjct: 481 RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM 540
Query: 541 SCELSSSHRTGWGRRTQGWERLENKELLGLSLV 573
SCELSSSHRTGWGRRTQGWERLENKELLGLSLV
Sbjct: 541 SCELSSSHRTGWGRRTQGWERLENKELLGLSLV 573
>gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 1172 bits (3031), Expect = 0.0
Identities = 570/573 (99%), Positives = 572/573 (99%)
Query: 1 MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP 60
MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP
Sbjct: 1 MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP 60
Query: 61 PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV 120
PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV
Sbjct: 61 PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV 120
Query: 121 RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM 180
RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM
Sbjct: 121 RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM 180
Query: 181 IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG 240
IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG
Sbjct: 181 IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG 240
Query: 241 ERSLGLENKGEGRSPLAAGEGLLRIESGDGTFGISENVDAAFFCFLRDPSGASPPPLPLK 300
ERSLGLENKGEGRSPLAAG GLLRIESGDGTFGISENV+AAFFCFLRDPSGASPPPLPLK
Sbjct: 241 ERSLGLENKGEGRSPLAAGAGLLRIESGDGTFGISENVEAAFFCFLRDPSGASPPPLPLK 300
Query: 301 ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI 360
ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI
Sbjct: 301 ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI 360
Query: 361 GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL 420
GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL
Sbjct: 361 GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL 420
Query: 421 RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP 480
RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP
Sbjct: 421 RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP 480
Query: 481 RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM 540
RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM
Sbjct: 481 RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM 540
Query: 541 SCELSSSHRTGWGRRTQGWERLENKELLGLSLV 573
SCELSSSHRTGWGRRTQGWERLENKELLGLSL+
Sbjct: 541 SCELSSSHRTGWGRRTQGWERLENKELLGLSLM 573
>gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 1172 bits (3031), Expect = 0.0
Identities = 570/573 (99%), Positives = 572/573 (99%)
Query: 1 MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP 60
MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP
Sbjct: 1 MLRSPGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSP 60
Query: 61 PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV 120
PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV
Sbjct: 61 PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSV 120
Query: 121 RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM 180
RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM
Sbjct: 121 RAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRSRLM 180
Query: 181 IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG 240
IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG
Sbjct: 181 IMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESACGQDKAKAAQRRVMRPQRTRASG 240
Query: 241 ERSLGLENKGEGRSPLAAGEGLLRIESGDGTFGISENVDAAFFCFLRDPSGASPPPLPLK 300
ERSLGLENKGEGRSPLAAG GLLRIESGDGTFGISENV+AAFFCFLRDPSGASPPPLPLK
Sbjct: 241 ERSLGLENKGEGRSPLAAGAGLLRIESGDGTFGISENVEAAFFCFLRDPSGASPPPLPLK 300
Query: 301 ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI 360
ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI
Sbjct: 301 ACCERSKDVKKMYDSLLPYARPKFIKSCGILEQSMACRKHRLVDCGCVTASFQWLSQNSI 360
Query: 361 GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL 420
GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL
Sbjct: 361 GTRTLAGLRRHEVSLSREQEAKFLEKLRGAGSTDWVFRSNSQAPPCTFPDTFPGAASLLL 420
Query: 421 RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP 480
RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP
Sbjct: 421 RTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSSAEEMPRSGISFQRMQLRQRWRHAEP 480
Query: 481 RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM 540
RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM
Sbjct: 481 RVVENLRKFAGASSGKRPWLDEGNSQPCSAGGSPGRNRRSIPGRGVFSSSWRRGGSGAEM 540
Query: 541 SCELSSSHRTGWGRRTQGWERLENKELLGLSLV 573
SCELSSSHRTGWGRRTQGWERLENKELLGLSL+
Sbjct: 541 SCELSSSHRTGWGRRTQGWERLENKELLGLSLM 573
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 1 MLRSPGPHHR----SQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWL 56
+ RSP P HR S S RPLP P P + P P P P PA G + + L
Sbjct: 191 LARSPPPPHRPRLPSAESLSRRPLPALPVPEA---PSPSPV---PSPAPGRKGSIQDRPL 244
Query: 57 PRSPPTLPLTWVLRCPSHATLNRLSEDKPVGH 88
P PP LP + R ED P GH
Sbjct: 245 PPPPPRLPGYGGPKVEGDPE-GREMEDDPAGH 275
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 1 MLRSPGPHHR----SQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWL 56
+ RSP P HR S S RPLP P P + P P P P PA G + + L
Sbjct: 284 LARSPPPPHRPRLPSAESLSRRPLPALPVPEA---PSPSPV---PSPAPGRKGSIQDRPL 337
Query: 57 PRSPPTLPLTWVLRCPSHATLNRLSEDKPVGH 88
P PP LP + R ED P GH
Sbjct: 338 PPPPPRLPGYGGPKVEGDPE-GREMEDDPAGH 368
Score = 29.6 bits (65), Expect = 7.8
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 5 PGPHHRSQTSPC-ARPLPTFPAPWSRLVPGPCPPS---LHPGP-AVGFQSPLTQDWLP-- 57
P P H ++ P P P P S GPCPPS ++ P A G Q +D L
Sbjct: 89 PAPDHSNEDQEVYVVPPPARPCPTSGPPAGPCPPSPDLIYKIPRASGTQLAAPRDALEVY 148
Query: 58 RSPPT---LPLTWVLRCPSHAT--LNRLSEDKPVGHDFP 91
PPT +P + CP+ + L R++ P D P
Sbjct: 149 DVPPTALRVPSSGPYDCPASFSHPLTRVAPQPPGEDDAP 187
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 36.6 bits (83), Expect = 0.064
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 7 PHHRSQTSPCARPLPTFPAPWSRL--VPGPCPPSLHPGPAVGFQSPLTQDWLPRSPPTLP 64
P R + RP P PAP P P PGP + S P S PT
Sbjct: 436 PSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTAR 495
Query: 65 LTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAG 104
V R P HA + S P + LP L+GS+ G
Sbjct: 496 AFQVPRRPGHAARRQFSVKMPETFNPQLPG--LYGSAGRG 533
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 36.6 bits (83), Expect = 0.064
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 7 PHHRSQTSPCARPLPTFPAPWSRL--VPGPCPPSLHPGPAVGFQSPLTQDWLPRSPPTLP 64
P R + RP P PAP P P PGP + S P S PT
Sbjct: 381 PSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTAR 440
Query: 65 LTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAG 104
V R P HA + S P + LP L+GS+ G
Sbjct: 441 AFQVPRRPGHAARRQFSVKMPETFNPQLPG--LYGSAGRG 478
>gi|125987588 leukocyte immunoglobulin-like receptor, subfamily B,
member 4 isoform 2 [Homo sapiens]
Length = 447
Score = 35.8 bits (81), Expect = 0.11
Identities = 52/209 (24%), Positives = 72/209 (34%), Gaps = 48/209 (22%)
Query: 24 PAPWSRLVPGPCPPSLHPGPAVGFQSP-LTQDWLPR-----------SPPTLPLTWVLRC 71
PAPW R P L P F P +T+D+ R S P+ PL V+
Sbjct: 66 PAPWDRQNP------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTG 119
Query: 72 PSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSVRAGAQIVLPHV 131
+ KP P P LV G S LLC + ++ A L H+
Sbjct: 120 ---------AYSKPTLSALPSP-LVTSGKSVT--LLCQSRSPMDTFLLIKERAAHPLLHL 167
Query: 132 QEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNY----------------TGDPTPS 175
+ + + ++ T GG Y +S G +Y DP PS
Sbjct: 168 RSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSGSLEDPRPS 227
Query: 176 RSRLMIMTCGGDPRKSPLYEDSSVPENEL 204
+R + G P PL SVP + L
Sbjct: 228 PTRSVSTAAG--PEDQPLMPTGSVPHSGL 254
>gi|125987585 leukocyte immunoglobulin-like receptor, subfamily B,
member 4 isoform 1 [Homo sapiens]
Length = 448
Score = 35.8 bits (81), Expect = 0.11
Identities = 52/209 (24%), Positives = 72/209 (34%), Gaps = 48/209 (22%)
Query: 24 PAPWSRLVPGPCPPSLHPGPAVGFQSP-LTQDWLPR-----------SPPTLPLTWVLRC 71
PAPW R P L P F P +T+D+ R S P+ PL V+
Sbjct: 66 PAPWDRQNP------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTG 119
Query: 72 PSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECSPSVRAGAQIVLPHV 131
+ KP P P LV G S LLC + ++ A L H+
Sbjct: 120 ---------AYSKPTLSALPSP-LVTSGKSVT--LLCQSRSPMDTFLLIKERAAHPLLHL 167
Query: 132 QEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNY----------------TGDPTPS 175
+ + + ++ T GG Y +S G +Y DP PS
Sbjct: 168 RSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSGSLEDPRPS 227
Query: 176 RSRLMIMTCGGDPRKSPLYEDSSVPENEL 204
+R + G P PL SVP + L
Sbjct: 228 PTRSVSTAAG--PEDQPLMPTGSVPHSGL 254
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 35.8 bits (81), Expect = 0.11
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 4 SPGPHHRSQT-------------SPCARP--LPTFPAPWSRLVPGPCPPS---LHPGPAV 45
+P P H S + P A P +P FP P L PGP P + PGPA+
Sbjct: 1937 APSPEHSSPSVRLLPSAPQTLPDGPLASPARVPMFPVP---LPPGPLEPGPGCVTPGPAL 1993
Query: 46 GFQSPLTQDWLPRSPPTLPLTWVLRCPSHATLNRLSEDKPVGH 88
GF P P PP +L+ + ++ PVG+
Sbjct: 1994 GFLEPSGPGLPPGVPPLQERRHLLQEARSPDPGIVPQEAPVGN 2036
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 35.4 bits (80), Expect = 0.14
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 396 VFRSNSQAPPCTFPDTFPGAASLLLRTDREVPGLPLVELDSSRIAWRIFSGHSGCLRLSS 455
+ R + + P T +T GAA++ R +RE + LV L + + H G + S
Sbjct: 31 LLRCSRRRRPAT-AETGGGAAAVARRNERERNRVKLVNLGFQALRQHV--PHGGASKKLS 87
Query: 456 AEEMPRSGISFQRMQLRQRWRHAEPR--VVENLRKFAGASSGKR--PWLDEGNSQPCSAG 511
E RS + + R R H R + LR A S R P + P A
Sbjct: 88 KVETLRSAVEYIRALQRLLAEHDAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRAS 147
Query: 512 GSPGRNRRSIPG--RGVFSS 529
SPGR S PG R +SS
Sbjct: 148 SSPGRGGSSEPGSPRSAYSS 167
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 34.7 bits (78), Expect = 0.24
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 6 GPHHRSQTSPC----ARPLPTFPAPWSRLVPGPCPPS--------LHPGPAVGFQSPLTQ 53
GP S SP A PL + P P P P PP P P VGF SP T
Sbjct: 288 GPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTP 347
Query: 54 DWLPRSPPTLP 64
P SPP+ P
Sbjct: 348 P--PPSPPSFP 356
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 34.7 bits (78), Expect = 0.24
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 4 SPGPHHRSQTSPCARPLPTFPAPWSRLVPG----PCPPSLHPGPA-VGFQS-PLTQDWLP 57
+P P H S+ R P P P RL PG P PP + P P+ V ++ P Q P
Sbjct: 191 TPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAP 250
Query: 58 RSPPTLPLTWVLRCPSHATLNRLSEDKPVGHD 89
PP V PS T N + + P H+
Sbjct: 251 PPPPYRQPPGVPNGPSSPT-NESAPELPQRHN 281
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 34.3 bits (77), Expect = 0.32
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 111 LKGAECSPSVRAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTG 170
L+G EC S + + + V VTS+ +G +G+ G++ V+ GSG Y G
Sbjct: 489 LEGEECRMSGECQSAVCISVVSNVTST---------SGSSGSSRGVFGGVSGSGSGGYKG 539
Query: 171 DPTPSRS 177
+ S S
Sbjct: 540 GSSSSSS 546
>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
Length = 462
Score = 34.3 bits (77), Expect = 0.32
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 189 RKSPLYEDSSVPENELGSALTSGASFESACGQ-------DKAKAAQRRVMRPQRTRASGE 241
+++P+ D + P E G +GA C D++ AA R R R G
Sbjct: 247 KRAPVGPDGASPTTENGLGAAAGAGENGHCAPPPADVEPDESSAAAERRRRRGALRRGGR 306
Query: 242 RSLGLEN-----KGEGRSPLAAGEGLLRIESGDGTFG 273
R G E G+G P AA G L G G
Sbjct: 307 RRAGAEGGAGGADGQGAGPGAAESGALTASRSPGPGG 343
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.5 bits (75), Expect = 0.54
Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 5 PGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHP-GPAVGFQSPLTQDWLPRSPPTL 63
P P H SQ S + P P PAP P L PA PL PRSPP
Sbjct: 222 PPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQ 281
Query: 64 PLTWVLRCPSHATLNRLSEDKPV 86
P T V S T L ++PV
Sbjct: 282 PHTPV--TISLGTAPSLQNNQPV 302
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.5 bits (75), Expect = 0.54
Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 5 PGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHP-GPAVGFQSPLTQDWLPRSPPTL 63
P P H SQ S + P P PAP P L PA PL PRSPP
Sbjct: 222 PPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQ 281
Query: 64 PLTWVLRCPSHATLNRLSEDKPV 86
P T V S T L ++PV
Sbjct: 282 PHTPV--TISLGTAPSLQNNQPV 302
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.5 bits (75), Expect = 0.54
Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 5 PGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHP-GPAVGFQSPLTQDWLPRSPPTL 63
P P H SQ S + P P PAP P L PA PL PRSPP
Sbjct: 222 PPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQ 281
Query: 64 PLTWVLRCPSHATLNRLSEDKPV 86
P T V S T L ++PV
Sbjct: 282 PHTPV--TISLGTAPSLQNNQPV 302
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 33.5 bits (75), Expect = 0.54
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 3 RSPGPHHRSQTSPCARP-LPTFPAPWSR---LVPGPCPPSLHPGPAVGFQSPLTQDWLPR 58
R+P PHH + +P T PAP + PGP +LHP P P TQ LP+
Sbjct: 838 RTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTTQ--LPQ 895
Query: 59 S-PPTLP 64
P+LP
Sbjct: 896 QVQPSLP 902
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 33.5 bits (75), Expect = 0.54
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 33/202 (16%)
Query: 3 RSPGPHH--RSQTSPCARPLPTFPAPWSRLVPGPCP--PSLH-PGPAVGFQSPLTQDWLP 57
RSP P +Q P P FPAP P CP P+L P + G PL P
Sbjct: 710 RSPSPCKSLEAQPDPDLGPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDP 769
Query: 58 RSPPTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECS 117
SPP P + P P+ PLP SS+A C S
Sbjct: 770 SSPPPCPPVLTVATP----------PPPLLPTVPLPA----PSSSASPHPCP-------S 808
Query: 118 PSVRAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRS 177
P A AQ LP + S +P + A G +L +S S + S S
Sbjct: 809 PLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSS-------SSS 861
Query: 178 RLMIMTCGGDPRKSPLYEDSSV 199
+ P PL SSV
Sbjct: 862 SFSSSSSSSSPSPPPLSAISSV 883
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 33.5 bits (75), Expect = 0.54
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 33/202 (16%)
Query: 3 RSPGPHH--RSQTSPCARPLPTFPAPWSRLVPGPCP--PSLH-PGPAVGFQSPLTQDWLP 57
RSP P +Q P P FPAP P CP P+L P + G PL P
Sbjct: 911 RSPSPCKSLEAQPDPDLGPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDP 970
Query: 58 RSPPTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECS 117
SPP P + P P+ PLP SS+A C S
Sbjct: 971 SSPPPCPPVLTVATP----------PPPLLPTVPLPA----PSSSASPHPCP-------S 1009
Query: 118 PSVRAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRS 177
P A AQ LP + S +P + A G +L +S S + S S
Sbjct: 1010 PLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSS-------SSS 1062
Query: 178 RLMIMTCGGDPRKSPLYEDSSV 199
+ P PL SSV
Sbjct: 1063 SFSSSSSSSSPSPPPLSAISSV 1084
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 33.5 bits (75), Expect = 0.54
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 33/202 (16%)
Query: 3 RSPGPHH--RSQTSPCARPLPTFPAPWSRLVPGPCP--PSLH-PGPAVGFQSPLTQDWLP 57
RSP P +Q P P FPAP P CP P+L P + G PL P
Sbjct: 911 RSPSPCKSLEAQPDPDLGPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDP 970
Query: 58 RSPPTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAECS 117
SPP P + P P+ PLP SS+A C S
Sbjct: 971 SSPPPCPPVLTVATP----------PPPLLPTVPLPA----PSSSASPHPCP-------S 1009
Query: 118 PSVRAGAQIVLPHVQEVTSSLAFRLPVSLAGETGAEGGIYSLVASGGSGNYTGDPTPSRS 177
P A AQ LP + S +P + A G +L +S S + S S
Sbjct: 1010 PLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSS-------SSS 1062
Query: 178 RLMIMTCGGDPRKSPLYEDSSV 199
+ P PL SSV
Sbjct: 1063 SFSSSSSSSSPSPPPLSAISSV 1084
>gi|41349454 proline arginine-rich end leucine-rich repeat protein
precursor [Homo sapiens]
Length = 382
Score = 33.5 bits (75), Expect = 0.54
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 6 GPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGP 43
GP R + P RP P+FP P P PP L PGP
Sbjct: 31 GPGRRPRPRP--RPTPSFPQPDEPAEPTDLPPPLPPGP 66
>gi|4506041 proline arginine-rich end leucine-rich repeat protein
precursor [Homo sapiens]
Length = 382
Score = 33.5 bits (75), Expect = 0.54
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 6 GPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGP 43
GP R + P RP P+FP P P PP L PGP
Sbjct: 31 GPGRRPRPRP--RPTPSFPQPDEPAEPTDLPPPLPPGP 66
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 33.5 bits (75), Expect = 0.54
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 5 PGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPAVGFQSPLTQDWLPRSPP 61
PG + PC P FPA + GPCPP + P P GF + + P PP
Sbjct: 651 PGLPRPLGSFPCPTPQEDFPA-----LGGPCPPRMPPPP--GFSAVVLLKGTPPPPP 700
>gi|4504831 potassium voltage-gated channel, subfamily H, member 1
isoform 2 [Homo sapiens]
Length = 962
Score = 33.1 bits (74), Expect = 0.71
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 19/65 (29%)
Query: 210 SGASFESACGQ----DKAKAAQRRVMRPQRTRASGERS---------------LGLENKG 250
S A F+ ACG+ +K A+ P+RT+ASGE + L L+N G
Sbjct: 809 SWARFKDACGKSEDWNKVSKAESMETLPERTKASGEATLKKTDSCDSGITKSDLRLDNVG 868
Query: 251 EGRSP 255
E RSP
Sbjct: 869 EARSP 873
>gi|27437001 potassium voltage-gated channel, subfamily H, member 1
isoform 1 [Homo sapiens]
Length = 989
Score = 33.1 bits (74), Expect = 0.71
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 19/65 (29%)
Query: 210 SGASFESACGQ----DKAKAAQRRVMRPQRTRASGERS---------------LGLENKG 250
S A F+ ACG+ +K A+ P+RT+ASGE + L L+N G
Sbjct: 836 SWARFKDACGKSEDWNKVSKAESMETLPERTKASGEATLKKTDSCDSGITKSDLRLDNVG 895
Query: 251 EGRSP 255
E RSP
Sbjct: 896 EARSP 900
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 33.1 bits (74), Expect = 0.71
Identities = 65/268 (24%), Positives = 97/268 (36%), Gaps = 38/268 (14%)
Query: 5 PGPHHRSQTSPCARPLPTFPAPWSRLVPGPC---PPSLHPGPAVGFQ-SPLTQDWLPRSP 60
P PHH Q P P P P L P P P+L P P + Q + Q LP P
Sbjct: 926 PSPHHTVQNMRATPPQPALP-PQPTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLPPQP 984
Query: 61 -----PTLPLTWVLRCPSHATLNRLSEDKPVGHDFPLPQLVLHGSSAAGLLLCAELKGAE 115
P LP L L E P Q++L + + + A++
Sbjct: 985 MLPPQPVLPPQPALPVRPEPLQPHLPEQAAPAAT-PGSQILLGHPAPYAVDVAAQVPTVP 1043
Query: 116 CSPSVRAGAQIVLPHVQEV----TSSLAFRLPVSLAGETGAEGGIYSLVAS--------- 162
P A ++ P + EV L + P SLA + + + + A+
Sbjct: 1044 VPP-----AAVLSPPLPEVLLPAAPELLPQFPSSLATVSASVQSVPTQTATLLPPANPPL 1098
Query: 163 -GGSGNYTGDPTPSRSRLMIMTCGGDPRKSPLYEDSSVPENELGSALTSGASFESAC--- 218
GG G + PT + + K P S E+ GS +TSG +C
Sbjct: 1099 PGGPGIASPCPTVQLTVEPVQEEQASQDKPPGLPQSC--ESYGGSDVTSGKELSDSCEGA 1156
Query: 219 ---GQDKAKAAQRRVMRPQRTRASGERS 243
G+ + +AA++ R R R+ ER+
Sbjct: 1157 FGGGRLEGRAARKHHRRSTRARSRQERA 1184
>gi|45827734 small proline-rich protein 1A [Homo sapiens]
Length = 89
Score = 33.1 bits (74), Expect = 0.71
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 5 PGPHHRSQTSPCARPLPTFPAPWSRLVPGPCPPSLHPGPA 44
P P H PC P P P VP PCP ++ P PA
Sbjct: 46 PEPCHPKVPEPCQ---PKVPEPCQPKVPEPCPSTVTPAPA 82
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 36 PPSLHPGPAVGFQSPLTQDWLPRSPPTLPLTWVLRCPSHA 75
P HPGP + S WLP P L TW CP+ A
Sbjct: 731 PAPGHPGPQAPYLSANASSWLPHLPAQLEGTWA--CPACA 768
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,940,526
Number of Sequences: 37866
Number of extensions: 1517176
Number of successful extensions: 6151
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 5966
Number of HSP's gapped (non-prelim): 335
length of query: 573
length of database: 18,247,518
effective HSP length: 108
effective length of query: 465
effective length of database: 14,157,990
effective search space: 6583465350
effective search space used: 6583465350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.