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Search of human proteins with 239742690
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742690 PREDICTED: hypothetical protein [Homo sapiens]
(223 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748665 PREDICTED: hypothetical protein [Homo sapiens] 442 e-124
gi|239742690 PREDICTED: hypothetical protein [Homo sapiens] 442 e-124
gi|239754083 PREDICTED: hypothetical protein XP_002345877 [Homo ... 212 2e-55
gi|4505917 exosome component 10 isoform 2 [Homo sapiens] 39 0.004
gi|50301240 exosome component 10 isoform 1 [Homo sapiens] 39 0.004
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 34 0.088
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 34 0.11
gi|61966747 hypothetical protein LOC389151 [Homo sapiens] 33 0.26
gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens] 32 0.33
gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo sa... 32 0.44
gi|130978956 adrenocortical dysplasia homolog isoform 1 [Homo sa... 32 0.44
gi|130978962 adrenocortical dysplasia homolog isoform 2 [Homo sa... 32 0.44
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 32 0.57
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 32 0.57
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 32 0.57
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.7
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.7
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.7
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 30 2.2
gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s... 30 2.2
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 30 2.2
gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens] 29 2.8
gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens] 29 2.8
gi|161019170 mucin 5AC [Homo sapiens] 29 3.7
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 3.7
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 29 3.7
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 28 4.8
gi|23503293 solute carrier family 16, member 11 [Homo sapiens] 28 4.8
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens] 28 4.8
gi|40316837 ATPase, class I, type 8B, member 2 isoform a [Homo s... 28 4.8
>gi|239748665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 442 bits (1136), Expect = e-124
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD
Sbjct: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
Query: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLP 120
VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLP
Sbjct: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLP 120
Query: 121 HSSAILRNQTASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNPSTNF 180
HSSAILRNQTASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNPSTNF
Sbjct: 121 HSSAILRNQTASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNPSTNF 180
Query: 181 TYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEKLED 223
TYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEKLED
Sbjct: 181 TYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEKLED 223
>gi|239742690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 442 bits (1136), Expect = e-124
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD
Sbjct: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
Query: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLP 120
VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLP
Sbjct: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLP 120
Query: 121 HSSAILRNQTASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNPSTNF 180
HSSAILRNQTASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNPSTNF
Sbjct: 121 HSSAILRNQTASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNPSTNF 180
Query: 181 TYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEKLED 223
TYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEKLED
Sbjct: 181 TYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEKLED 223
>gi|239754083 PREDICTED: hypothetical protein XP_002345877 [Homo
sapiens]
Length = 110
Score = 212 bits (540), Expect = 2e-55
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD
Sbjct: 1 MELLAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALALFAPDPD 60
Query: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP
Sbjct: 61 VPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASP 106
>gi|4505917 exosome component 10 isoform 2 [Homo sapiens]
Length = 860
Score = 38.9 bits (89), Expect = 0.004
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 70 PAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQ 129
PA L P Q L+ P ETP F++S L L+ + +L Q
Sbjct: 267 PADAVLQKP-QPQLYRPIEETPCHFISS-----------------LDELVELNEKLLNCQ 308
Query: 130 TASMDLGRQSWRSSLGLLCLVELITAVA-CLLKTLRSRGQLTIVEQN 175
++DL S+RS LGL CL+++ T ++ TL R + I+ ++
Sbjct: 309 EFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNES 355
>gi|50301240 exosome component 10 isoform 1 [Homo sapiens]
Length = 885
Score = 38.9 bits (89), Expect = 0.004
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 70 PAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQ 129
PA L P Q L+ P ETP F++S L L+ + +L Q
Sbjct: 267 PADAVLQKP-QPQLYRPIEETPCHFISS-----------------LDELVELNEKLLNCQ 308
Query: 130 TASMDLGRQSWRSSLGLLCLVELITAVA-CLLKTLRSRGQLTIVEQN 175
++DL S+RS LGL CL+++ T ++ TL R + I+ ++
Sbjct: 309 EFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNES 355
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 34.3 bits (77), Expect = 0.088
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 95 VTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQTASMDLGRQSWRS-SLGLLCLVELI 153
VT +P SP C + + P HSSA + T S+ L + + ++ L L
Sbjct: 672 VTGASGVPENSPPCTVNIPIAPI---HSSAQAMSPTQSIGLVQSLLANQNVQLDVLTNQT 728
Query: 154 TAVACLLKTLRSRGQLTIVEQNPSTNFTYVQGLEEGITLRSGRVMSLPVPSEGPLELQLS 213
TAV S Q + + + +E G +++ +SLP P +GP++L
Sbjct: 729 TAVGTAEHAGDSATQYPVSNRYSNPGQVIFGSVEMGRIIQNPPPLSLPPPPQGPMQLSTV 788
Query: 214 YH 215
H
Sbjct: 789 GH 790
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 33.9 bits (76), Expect = 0.11
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 43 EKQQTSVRALALFAPDPDVPPQRSEVPPAQGSL-LSPAQVGLFLPRRETPIPFV 95
++QQ + A AP P +PP P G +PAQV +FLP PFV
Sbjct: 438 QQQQQQQQQAASVAPVPTMPPALQPFPAPVGPFDAAPAQVAVFLPPPHMQPPFV 491
>gi|61966747 hypothetical protein LOC389151 [Homo sapiens]
Length = 265
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 58 DPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIP 93
DP+ P R + P + L P+ +F+P RE PIP
Sbjct: 160 DPEFPELRMDSPTGSAAGLYPSSRSMFIPYREGPIP 195
>gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens]
Length = 633
Score = 32.3 bits (72), Expect = 0.33
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 90 TPIPFVTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQTASMDLGRQS 139
TP P V ++IPA PS TS +P + + Q AS LG Q+
Sbjct: 189 TPPPLVRGTQNIPAGKPSLQTSSARMPGSVIPPPLVRGGQQASSKLGPQA 238
>gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo
sapiens]
Length = 528
Score = 32.0 bits (71), Expect = 0.44
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 38 GSNAAEKQQTSVR---ALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPF 94
G ++E+ TS+ AL+L APDP QRS P+ +PA + PR +P
Sbjct: 366 GHMSSEESGTSISLLPALSLAAPDPG---QRSSSQPSPAICSAPATL---TPR--SPHAS 417
Query: 95 VTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQTASMDLGRQSWRSSLGLLC 148
T + + + +PS + + +PS PH + + R Q S++ ++ +GL C
Sbjct: 418 RTPSSPLQSCTPSLSPRSH-VPS--PHQALVTRPQKPSLE-----FKEFVGLPC 463
>gi|130978956 adrenocortical dysplasia homolog isoform 1 [Homo
sapiens]
Length = 544
Score = 32.0 bits (71), Expect = 0.44
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 38 GSNAAEKQQTSVR---ALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPF 94
G ++E+ TS+ AL+L APDP QRS P+ +PA + PR +P
Sbjct: 369 GHMSSEESGTSISLLPALSLAAPDPG---QRSSSQPSPAICSAPATL---TPR--SPHAS 420
Query: 95 VTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQTASMDLGRQSWRSSLGLLC 148
T + + + +PS + + +PS PH + + R Q S++ ++ +GL C
Sbjct: 421 RTPSSPLQSCTPSLSPRSH-VPS--PHQALVTRPQKPSLE-----FKEFVGLPC 466
>gi|130978962 adrenocortical dysplasia homolog isoform 2 [Homo
sapiens]
Length = 541
Score = 32.0 bits (71), Expect = 0.44
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 38 GSNAAEKQQTSVR---ALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPF 94
G ++E+ TS+ AL+L APDP QRS P+ +PA + PR +P
Sbjct: 366 GHMSSEESGTSISLLPALSLAAPDPG---QRSSSQPSPAICSAPATL---TPR--SPHAS 417
Query: 95 VTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQTASMDLGRQSWRSSLGLLC 148
T + + + +PS + + +PS PH + + R Q S++ ++ +GL C
Sbjct: 418 RTPSSPLQSCTPSLSPRSH-VPS--PHQALVTRPQKPSLE-----FKEFVGLPC 463
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 31.6 bits (70), Expect = 0.57
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 11 GLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRA----LALFAPDPDVPPQRS 66
G+ P +K++ + + A ++FV S + E+Q+ + + LA AP P +PP +
Sbjct: 1415 GIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPPPTLPPDMA 1474
Query: 67 EVPPAQGSLLSPAQVGLFLPRRET---PIPFVTSNKD 100
+V G LL + +G P+R + + FV D
Sbjct: 1475 QVTVGPG-LLGVSTLG---PKRNSMVLDVAFVLEGSD 1507
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 31.6 bits (70), Expect = 0.57
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 37 SGSNAAEKQQTSVRALALFAPDPDVPPQRSEVPPAQGS------LLSPAQVGLFLPRRET 90
SGS A ++ A A F+P P + P R +PP S LL P + G P
Sbjct: 111 SGSFALRRRGFLFSAAAAFSPPPRLFPHRGFLPPPAASGLCPPRLLIPYRRGFLPPTPPP 170
Query: 91 PIPFVTSNKDIP---AASPSCATSCYLLPSLLP 120
P +P AA+ C + P LP
Sbjct: 171 PQRLFARPGFLPTPAAATAFCPPRLFARPGFLP 203
Score = 29.6 bits (65), Expect = 2.2
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 14 PWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSVRALA------LFAPDPD----VPP 63
PWL +R F A+ +F + A + A LFAP P PP
Sbjct: 234 PWLSARRGFLPPAAAAAAAAFCSPTAAAFSPPPPWLFVAATFCSTRLFAPPPPRLFAPPP 293
Query: 64 QRSEVPPAQGSLLSPAQVGLFLPRR 88
R PP L P + G LP R
Sbjct: 294 PRLFAPPPPRLLFPPCRRGFLLPYR 318
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 31.6 bits (70), Expect = 0.57
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 53 ALFAPDPDVPPQRS------EVPPAQG---SLLSPAQVGL-FLPRRE-----------TP 91
A FAP P PP S +P QG SL P GL + P R P
Sbjct: 289 AQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNP 348
Query: 92 IPFVTSNKDIPAASPSCATSCYLLPSLLPHSSAILRNQTAS 132
P +T + +P SP+ LP L P+ +++ + + S
Sbjct: 349 TPPMTPSSSVPYMSPNQEVKSPFLPDLKPNLNSLHSSPSGS 389
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 57 PDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLP 116
P P PPQ P AQ S +PAQ P + P V+ + A +P+ + L P
Sbjct: 218 PQPQPPPQHPSQPSAQ-SAPAPAQ-----PAPQPPPAKVSKPSQLQAHTPASQQTPPLPP 271
Query: 117 SLLPHSSAILRNQTASMDLG 136
P S + + ++ LG
Sbjct: 272 YASPRSPPVQPHTPVTISLG 291
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 57 PDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLP 116
P P PPQ P AQ S +PAQ P + P V+ + A +P+ + L P
Sbjct: 218 PQPQPPPQHPSQPSAQ-SAPAPAQ-----PAPQPPPAKVSKPSQLQAHTPASQQTPPLPP 271
Query: 117 SLLPHSSAILRNQTASMDLG 136
P S + + ++ LG
Sbjct: 272 YASPRSPPVQPHTPVTISLG 291
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 57 PDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLP 116
P P PPQ P AQ S +PAQ P + P V+ + A +P+ + L P
Sbjct: 218 PQPQPPPQHPSQPSAQ-SAPAPAQ-----PAPQPPPAKVSKPSQLQAHTPASQQTPPLPP 271
Query: 117 SLLPHSSAILRNQTASMDLG 136
P S + + ++ LG
Sbjct: 272 YASPRSPPVQPHTPVTISLG 291
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 2.2
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 24 LNETASFVRSFVRSGSNA-------AEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLL 76
L+ +A+ + S RSG +A A Q + L P P V P R + PA G L
Sbjct: 233 LSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP-PQVTPPRKDAAPALGPLS 291
Query: 77 SP--AQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSL 118
S A P + P + + PA PS AT+ P+L
Sbjct: 292 SSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTL 335
>gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo
sapiens]
Length = 832
Score = 29.6 bits (65), Expect = 2.2
Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 37/164 (22%)
Query: 62 PPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPSLLPH 121
P S PP G L+ A G P+R P + PA +P C LL LLP
Sbjct: 4 PGSSSRQPPLAGCSLAGASCG---PQRG---PAGSVPASAPARTPPCRLLLVLL--LLPP 55
Query: 122 SSAILRNQT-----ASMDLGRQSWRSSLGLLCLVELITAVACLLKTLRSRGQLTIVEQNP 176
+A R + S ++ +LG+L + ++QN
Sbjct: 56 LAASSRPRAWGAAAPSAPHWNETAEKNLGVLA------------------DEDNTLQQNS 97
Query: 177 STNFTYVQGLEEGITLRSGRVMSLPVPSEGPLELQLSYHCVGEK 220
S+N +Y +++ ITL S + + SE P YH + K
Sbjct: 98 SSNISYSNAMQKEITLPSRLIYYINQDSESP------YHVLDTK 135
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 2 [Homo sapiens]
Length = 1990
Score = 29.6 bits (65), Expect = 2.2
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 26 ETASFVRSFVRSGSNAAEKQQTSVRAL--------ALFAPDPDVPPQRSEVPPAQGSLLS 77
E+ S RS +SGS +Q+TSV L + A P PQ P QG L
Sbjct: 1549 ESMSVYRS--QSGSPVRYQQETSVSQLPGRPKSPLSKMAQRPYQMPQLPVAVPQQGLRLQ 1606
Query: 78 PAQVGLFLPRRETPIPFVTSNKDIPAAS 105
PA+ + R P P V S+ IP +
Sbjct: 1607 PAKAQIV--RSNQPSPAVHSSTVIPTGA 1632
>gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens]
Length = 288
Score = 29.3 bits (64), Expect = 2.8
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 7 LRGPGLQPWLRVKRVFFLNETASFVRSFV---RSGSNAAEKQQTSVRALALFAPDPDVPP 63
LRGPG + W +++V T+S FV R S+ +Q S++ P P P
Sbjct: 153 LRGPGKELWSPIQQV---TATSSKWAQFVLPPRKSSHVDSEQPRSLQR----DPRPAGPA 205
Query: 64 QRSE-VPPAQGSL--LSPAQVGLFLPRRETPIPFVTSNKDIPAASPS 107
Q + P AQ S LS + LPR P VTS + P S
Sbjct: 206 QAKQGTPRAQASREGLSRPTAAVQLPRATHP---VTSGSERPCGKTS 249
>gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens]
Length = 343
Score = 29.3 bits (64), Expect = 2.8
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 7 LRGPGLQPWLRVKRVFFLNETASFVRSFV---RSGSNAAEKQQTSVRALALFAPDPDVPP 63
LRGPG + W +++V T+S FV R S+ +Q S++ P P P
Sbjct: 208 LRGPGKELWSPIQQV---TATSSKWAQFVLPPRKSSHVDSEQPRSLQR----DPRPAGPA 260
Query: 64 QRSE-VPPAQGSL--LSPAQVGLFLPRRETPIPFVTSNKDIPAASPS 107
Q + P AQ S LS + LPR P VTS + P S
Sbjct: 261 QAKQGTPRAQASREGLSRPTAAVQLPRATHP---VTSGSERPCGKTS 304
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 47 TSVRALALFA-PDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAAS 105
T+ ALF+ P P P + PPA + + GL PR + + T+ A
Sbjct: 2313 TTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAG 2372
Query: 106 PSCATSCYLLPSLLPHSSAILRNQTASMDLGRQS 139
+ T + S LP SA L T S+ R S
Sbjct: 2373 STEPTVPGVATSTLPTRSA-LPGTTGSLGTWRPS 2405
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 47 TSVRALALFA-PDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAAS 105
T+ ALF+ P P P + PPA + + GL PR + + T+ A
Sbjct: 1623 TTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAG 1682
Query: 106 PSCATSCYLLPSLLPHSSAILRNQTASMDLGRQS 139
+ T + S LP SA L T S+ R S
Sbjct: 1683 STEPTVPGVATSTLPTRSA-LPGTTGSLGTWRPS 1715
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 28.9 bits (63), Expect = 3.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 42 AEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDI 101
A+KQ T ++ A VPP S P S PA LP TP+P TS +
Sbjct: 1730 AKKQATGIQQAQSSA---SVPPLASAPLPPSTSASVPASTSAPLPATLTPVPASTS-APV 1785
Query: 102 PAAS 105
PA++
Sbjct: 1786 PAST 1789
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 28.5 bits (62), Expect = 4.8
Identities = 32/119 (26%), Positives = 42/119 (35%), Gaps = 26/119 (21%)
Query: 24 LNETASFVRSFVRSGSNA-------AEKQQTSVRALALFAPDPDVPPQRSEVPPAQGSLL 76
L+ +A+ + S RSG +A A Q + L P P V P R + PA G L
Sbjct: 242 LSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP-PQVTPPRKDAAPALGPLS 300
Query: 77 S------------------PAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLPS 117
S P LP P P + + + SPS S LPS
Sbjct: 301 SSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPS 359
>gi|23503293 solute carrier family 16, member 11 [Homo sapiens]
Length = 471
Score = 28.5 bits (62), Expect = 4.8
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 4 LAPLRGPGLQPWLRVKRVFFLNETASFVRSFVRSGSNAAEKQQTSV---RAL---ALFAP 57
L L GP L +LR +ET F SF+ SGS + RAL +P
Sbjct: 386 LGGLLGPPLSGFLR-------DETGDFTASFLLSGSLILSGSFIYIGLPRALPSCGPASP 438
Query: 58 DPDVPPQRSEVPPA-QGSLLSPAQVG 82
PP+ E+ PA Q LLSP G
Sbjct: 439 PATPPPETGELLPAPQAVLLSPGGPG 464
>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
Length = 1460
Score = 28.5 bits (62), Expect = 4.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 66 SEVPPAQGSLLSPAQVGLFLPRRETPIPFVTSNKDIPAASPSCATSCYLLP 116
+ +P S+LSP +G+ + +PIP + + + + SP ++ +LP
Sbjct: 342 TNLPNGNPSILSPQPIGIVVAAVPSPIPVQRTRQLVTSPSPMSSSDGKVLP 392
>gi|40316837 ATPase, class I, type 8B, member 2 isoform a [Homo
sapiens]
Length = 1223
Score = 28.5 bits (62), Expect = 4.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 47 TSVRALALFAPDPDVPPQRSEVPPAQGSLLSPAQVGLFLPRRE 89
TS+ LA+ D DVP QRS P L P Q+ L +RE
Sbjct: 947 TSLPVLAMGVFDQDVPEQRSMEYP---KLYEPGQLNLLFNKRE 986
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,181,689
Number of Sequences: 37866
Number of extensions: 432564
Number of successful extensions: 1825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 88
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.