Guide to the Human Genome
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Search of human proteins with 239742592

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens]          222   4e-59
gi|239748575 PREDICTED: similar to hCG1654959 [Homo sapiens]          222   4e-59
gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens]          222   4e-59
gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens]         31   0.18 
gi|150418005 protein tyrosine phosphatase, non-receptor type 21 ...    30   0.53 
gi|189027090 cytoplasmic polyadenylation element binding protein...    30   0.53 
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]         29   0.69 
gi|110578660 transmembrane protein 91 isoform b [Homo sapiens]         29   0.69 
gi|149588874 transmembrane protein 91 isoform d [Homo sapiens]         29   0.69 
gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]         29   0.69 
gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]         29   0.69 
gi|149588540 transmembrane protein 91 isoform e [Homo sapiens]         29   0.69 
gi|205277429 hypothetical protein LOC57700 isoform b [Homo sapiens]    29   0.91 
gi|205277427 hypothetical protein LOC57700 isoform a [Homo sapiens]    29   0.91 
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]    28   1.5  
gi|166197696 hypothetical protein LOC128344 [Homo sapiens]             28   1.5  
gi|22325364 ubiquitin associated protein 2 [Homo sapiens]              27   2.6  
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]           27   4.5  
gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]            27   4.5  
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]       26   5.9  
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]      26   7.7  
gi|169164936 PREDICTED: family with sequence similarity 132, mem...    26   7.7  
gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap...    26   7.7  
gi|93140999 lunatic fringe isoform a [Homo sapiens]                    26   7.7  
gi|45827771 autoantigen RCD8 [Homo sapiens]                            26   7.7  

>gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens]
          Length = 104

 Score =  222 bits (566), Expect = 4e-59
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
           MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR
Sbjct: 1   MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60

Query: 61  EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
           EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG
Sbjct: 61  EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104


>gi|239748575 PREDICTED: similar to hCG1654959 [Homo sapiens]
          Length = 104

 Score =  222 bits (566), Expect = 4e-59
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
           MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR
Sbjct: 1   MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60

Query: 61  EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
           EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG
Sbjct: 61  EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104


>gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens]
          Length = 104

 Score =  222 bits (566), Expect = 4e-59
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
           MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR
Sbjct: 1   MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60

Query: 61  EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
           EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG
Sbjct: 61  EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104


>gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens]
          Length = 510

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 29/116 (25%)

Query: 10  GCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREE----GLS 65
           G  +K    D ++ E+ E++   +     +  PHS+   KN LE G+   R E      S
Sbjct: 364 GPPKKQVCGDSIKPEETEQEVAADET---RNLPHSKQGNKNDLEMGIKAARPEIADRATS 420

Query: 66  KGLGTKLDPTSASAHASDGAHR-------------------WRAACPSFPWCPQTH 102
           +  G++  P        DG HR                       C S PW P+ H
Sbjct: 421 EVPGSQASPNPV---PGDGLHRAGFDAFMTGYVMAYVEVSQGPQPCSSGPWLPECH 473


>gi|150418005 protein tyrosine phosphatase, non-receptor type 21
           [Homo sapiens]
          Length = 1174

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 14/68 (20%)

Query: 27  EEDTFPEAQMFQK------PAPHSQSHPKNALEFGVLKKREEGLSKGL-GTKLDPTSASA 79
           +ED+ P A   Q+       A H+Q H +N++E         GLS GL G +L   + SA
Sbjct: 607 QEDSLPVAHSLQEVSEPLTAARHAQLHKRNSIEVA-------GLSHGLEGLRLKERTLSA 659

Query: 80  HASDGAHR 87
            A++ A R
Sbjct: 660 SAAEVAPR 667


>gi|189027090 cytoplasmic polyadenylation element binding protein 4
           [Homo sapiens]
          Length = 729

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 18  RDPLETEQ------REEDTFPEAQMFQKPAPHSQSHPKNA-------LEFGVLKKREEGL 64
           +DPLE +Q      +E    PE +  +       +  +N        +E  VL   +   
Sbjct: 88  QDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQE 147

Query: 65  SKGLGTKLDPTSASAHASDGAHRWRAA 91
           + GLGT   P ++SA +  G   W AA
Sbjct: 148 ATGLGTSTQPLTSSASSLTGFSNWSAA 174


>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
          Length = 172

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 38  QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
           QKP  H    P   + F         L      +S GLG    P      +SD    W  
Sbjct: 24  QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83

Query: 91  ACPSFPWCPQTHLG 104
                P+ P  HLG
Sbjct: 84  GSRLSPFLPHDHLG 97


>gi|110578660 transmembrane protein 91 isoform b [Homo sapiens]
          Length = 139

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 38  QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
           QKP  H    P   + F         L      +S GLG    P      +SD    W  
Sbjct: 24  QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83

Query: 91  ACPSFPWCPQTHLG 104
                P+ P  HLG
Sbjct: 84  GSRLSPFLPHDHLG 97


>gi|149588874 transmembrane protein 91 isoform d [Homo sapiens]
          Length = 127

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 38  QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
           QKP  H    P   + F         L      +S GLG    P      +SD    W  
Sbjct: 24  QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83

Query: 91  ACPSFPWCPQTHLG 104
                P+ P  HLG
Sbjct: 84  GSRLSPFLPHDHLG 97


>gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]
          Length = 133

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 38  QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
           QKP  H    P   + F         L      +S GLG    P      +SD    W  
Sbjct: 24  QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83

Query: 91  ACPSFPWCPQTHLG 104
                P+ P  HLG
Sbjct: 84  GSRLSPFLPHDHLG 97


>gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]
          Length = 133

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 38  QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
           QKP  H    P   + F         L      +S GLG    P      +SD    W  
Sbjct: 24  QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83

Query: 91  ACPSFPWCPQTHLG 104
                P+ P  HLG
Sbjct: 84  GSRLSPFLPHDHLG 97


>gi|149588540 transmembrane protein 91 isoform e [Homo sapiens]
          Length = 123

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 38  QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
           QKP  H    P   + F         L      +S GLG    P      +SD    W  
Sbjct: 24  QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83

Query: 91  ACPSFPWCPQTHLG 104
                P+ P  HLG
Sbjct: 84  GSRLSPFLPHDHLG 97


>gi|205277429 hypothetical protein LOC57700 isoform b [Homo sapiens]
          Length = 738

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 19  DPLETEQREEDTFPEAQMFQKPAPHSQSHPKN 50
           DPL T+   E+T P  +      P +  HPKN
Sbjct: 528 DPLFTDISPENTLPNQEWLSSSPPATPDHPKN 559


>gi|205277427 hypothetical protein LOC57700 isoform a [Homo sapiens]
          Length = 765

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 19  DPLETEQREEDTFPEAQMFQKPAPHSQSHPKN 50
           DPL T+   E+T P  +      P +  HPKN
Sbjct: 528 DPLFTDISPENTLPNQEWLSSSPPATPDHPKN 559


>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
          Length = 1597

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 12  QRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSKGLGTK 71
           QR+      +ET+       P  +    P P +     +A   G L +  +         
Sbjct: 731 QRRDTHPSVVETDGHARVVVPTLKQHSHPPPLALGSGLHAPHKGPLPQASDPAVARQHRP 790

Query: 72  LDPTSASAHASDGAHRWR--AACPSFPWCPQTHL 103
           L  T  S+H +    RWR     P  P  PQ HL
Sbjct: 791 LPSTPDSSHHAQATPRWRYNKPLPPTPDLPQPHL 824


>gi|166197696 hypothetical protein LOC128344 [Homo sapiens]
          Length = 191

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 17  ARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSK 66
           AR  +  +  +++  P A  +QK +P  + H +N   F VL  R +   K
Sbjct: 75  ARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPK 124


>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
          Length = 1119

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 15  TAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALE 53
           TA+  P E       +     + QKP PHSQ+   N+ E
Sbjct: 274 TASSAPAENHILPGQSIDLVALLQKPVPHSQASEANSFE 312


>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
          Length = 602

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 40  PAPHSQSHPKNALEFGVL-KKREEGLSKGLGTKLDPTSASAHASDGAHRWRAAC 92
           PAPH Q HP+   +     K    G   G G     +SASA A+  A    A+C
Sbjct: 47  PAPHPQQHPQQHPQNQAHGKGGHRGGGGGGGKSSSSSSASAAAAAAAASSSASC 100


>gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]
          Length = 1720

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 22   ETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSKGLGTKLDPT 75
            E E+RE +   +  M ++  PH +         G  K +E+    GLGT+ DP+
Sbjct: 1431 EEEEREGEENDDEDMQEERNPHRE---------GARKTQEQDEEVGLGTEEDPS 1475


>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
          Length = 475

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 13  RKTAARDPLETEQREE-----DTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGL 64
           + +  +DP   E+ +E     +T  + +  + P P     P NA EF  L   +E L
Sbjct: 154 KNSEPQDPPNIEKPQEAPEYQETAAQLEFLELPPPQEPLEPSNAQEFLELSAAQESL 210


>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
          Length = 1390

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 13  RKTAARDPLETEQREEDTFPEAQMFQKPAPH 43
           R   A +    E++EEDTF E ++F +   H
Sbjct: 968 RSLTAEEVKRLEEQEEDTFRELRIFLRNVTH 998


>gi|169164936 PREDICTED: family with sequence similarity 132,
          member B [Homo sapiens]
          Length = 367

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 42 PHSQSHPKNALEFGVLKKREEGLSKGLGTKLDPTSASAHASDGAHRW 88
          P  +SHP  A   G  +  E     GL    +PT+  AH+ D    W
Sbjct: 51 PFPRSHPPRA--GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95


>gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo
          sapiens]
          Length = 367

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 42 PHSQSHPKNALEFGVLKKREEGLSKGLGTKLDPTSASAHASDGAHRW 88
          P  +SHP  A   G  +  E     GL    +PT+  AH+ D    W
Sbjct: 51 PFPRSHPPRA--GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95


>gi|93140999 lunatic fringe isoform a [Homo sapiens]
          Length = 379

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 42  PHSQSHPKNALEFGVLKKREEGLS-KG-LGTKLDPTSASAHASDGAHRWRAACPSFPWCP 99
           P S+ H +  L +G+ + +   +  KG    + DP   S   S   H +    P  PWCP
Sbjct: 322 PTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP---SRFRSIHCHLY----PDTPWCP 374

Query: 100 QT 101
           +T
Sbjct: 375 RT 376


>gi|45827771 autoantigen RCD8 [Homo sapiens]
          Length = 1401

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 21  LETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSKGLGTK----LDPTS 76
           LE ++ E    P+A   +  +P   S    AL   + +   E LS+G G+     L+P S
Sbjct: 709 LELQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDS 768

Query: 77  ASAHAS 82
            ++ AS
Sbjct: 769 MASAAS 774


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.129    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,401,999
Number of Sequences: 37866
Number of extensions: 178239
Number of successful extensions: 668
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 26
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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