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Search of human proteins with 239742274
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 186 3e-48
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 160 2e-40
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 150 2e-37
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 82 1e-16
gi|83699414 beta-defensin 130 [Homo sapiens] 82 1e-16
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 74 2e-14
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 74 2e-14
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 74 2e-14
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 74 3e-14
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 74 3e-14
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 74 3e-14
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 39 0.001
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 39 0.001
gi|4885181 defensin, beta 1 preproprotein [Homo sapiens] 34 0.022
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 33 0.037
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 33 0.037
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 32 0.14
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 32 0.14
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 30 0.31
gi|83582802 beta-defensin 128 [Homo sapiens] 30 0.31
gi|239743236 PREDICTED: hypothetical protein XP_002342810 [Homo ... 29 0.91
gi|239508911 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 28 1.2
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 28 1.6
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 28 1.6
gi|154816178 chemokine (C-X-C motif) ligand 16 [Homo sapiens] 27 4.5
gi|154816176 chemokine (C-X-C motif) ligand 16 [Homo sapiens] 27 4.5
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens] 27 4.5
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens] 27 4.5
gi|50344744 beta-defensin 108B [Homo sapiens] 27 4.5
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 186 bits (473), Expect = 3e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC
Sbjct: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
Query: 61 RAWWILMPIPTPLIMSDYQEPLKPKLK 87
RAWWILMPIPTPLIMSDYQEPLKPKLK
Sbjct: 61 RAWWILMPIPTPLIMSDYQEPLKPKLK 87
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 160 bits (405), Expect = 2e-40
Identities = 78/88 (88%), Positives = 81/88 (92%), Gaps = 2/88 (2%)
Query: 1 MRLHLLLLILL-FSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKC 59
MRLHLLLLILL FSILLSP +GGLGPAEGHCLNL GVCR DVC +VEDQIGACRR+MKC
Sbjct: 1 MRLHLLLLILLLFSILLSPV-RGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKC 59
Query: 60 CRAWWILMPIPTPLIMSDYQEPLKPKLK 87
CRAWWILMPIPTPLIMSDYQEPLKP LK
Sbjct: 60 CRAWWILMPIPTPLIMSDYQEPLKPNLK 87
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 150 bits (380), Expect = 2e-37
Identities = 74/84 (88%), Positives = 79/84 (94%), Gaps = 2/84 (2%)
Query: 1 MRLHLLLLILL-FSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKC 59
+RLH+LLLILL FSILLSP +G LGPAE HCL+LSGVCRRDVCKVVEDQIGACRR+MKC
Sbjct: 64 VRLHVLLLILLLFSILLSPV-RGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKC 122
Query: 60 CRAWWILMPIPTPLIMSDYQEPLK 83
CRAWWILMPIPTPLIMSDYQEPLK
Sbjct: 123 CRAWWILMPIPTPLIMSDYQEPLK 146
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 79
Score = 81.6 bits (200), Expect = 1e-16
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 61 RRWWILEPYPTPV 73
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 81.6 bits (200), Expect = 1e-16
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 61 RRWWILEPYPTPV 73
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 74.3 bits (181), Expect = 2e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 2 RLHLLLLILLFSILLSPGNK-GGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 110 RRWWILEPYPTPV 122
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 74.3 bits (181), Expect = 2e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 2 RLHLLLLILLFSILLSPGNK-GGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 110 RRWWILEPYPTPV 122
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 74.3 bits (181), Expect = 2e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 2 RLHLLLLILLFSILLSPGNK-GGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 110 RRWWILEPYPTPV 122
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 73.6 bits (179), Expect = 3e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 73.6 bits (179), Expect = 3e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 73.6 bits (179), Expect = 3e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RAWWILMPIPTPL 73
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MRLHLLLLILLFSILLS-PGNKGGLGPAEG-HCLNLSGVCRRDVCKVVEDQIGAC-RRKM 57
MR+H LL LLF L+ PG+ G + + +C G C C E+QIG C R
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 58 KCCR 61
KCCR
Sbjct: 61 KCCR 64
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MRLHLLLLILLFSILLS-PGNKGGLGPAEG-HCLNLSGVCRRDVCKVVEDQIGAC-RRKM 57
MR+H LL LLF L+ PG+ G + + +C G C C E+QIG C R
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 58 KCCR 61
KCCR
Sbjct: 61 KCCR 64
>gi|4885181 defensin, beta 1 preproprotein [Homo sapiens]
Length = 68
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 3 LHLLLLILLFSILLSPGN-KGGLGPAEGH--CLNLSGVCRRDVCKVVEDQIGAC-RRKMK 58
L L L LL S + S GN GLG H C++ G C C + G C R K K
Sbjct: 6 LLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAK 65
Query: 59 CCR 61
CC+
Sbjct: 66 CCK 68
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
MR L L +LF L+P + C L G C+ + C E+ I C++ +KCC
Sbjct: 1 MRTFLFLFAVLF--FLTPAKNAFF---DEKCNKLKGTCKNN-CGKNEELIALCQKSLKCC 54
Query: 61 R 61
R
Sbjct: 55 R 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
MR L L +LF L+P + C L G C+ + C E+ I C++ +KCC
Sbjct: 1 MRTFLFLFAVLF--FLTPAKNAFF---DEKCNKLKGTCKNN-CGKNEELIALCQKSLKCC 54
Query: 61 R 61
R
Sbjct: 55 R 55
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1 MRLHLLLLILLFSILLS-PGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRK-MK 58
MR+ LL LF L+ PG GG+G CL +C C QIG C K
Sbjct: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPV-TCLKSGAICHPVFCPRRYKQIGTCGLPGTK 59
Query: 59 CCR 61
CC+
Sbjct: 60 CCK 62
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1 MRLHLLLLILLFSILLS-PGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRK-MK 58
MR+ LL LF L+ PG GG+G CL +C C QIG C K
Sbjct: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPV-TCLKSGAICHPVFCPRRYKQIGTCGLPGTK 59
Query: 59 CCR 61
CC+
Sbjct: 60 CCK 62
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 3 LHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
+++L+L + LL+ KG P + N+ G CRR C E I CR K+ CC
Sbjct: 1 MNILMLTFIICGLLTRVTKGSFEPQKCWKNNV-GHCRRR-CLDTERYILLCRNKLSCC 56
>gi|83582802 beta-defensin 128 [Homo sapiens]
Length = 93
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLN-LSGVCRRDVCKVVEDQIGACRRKMKC 59
M+L L+L+ILLF +L G C N ++G CR+ CKV E C C
Sbjct: 1 MKLFLVLIILLFEVLTD-------GARLKKCFNKVTGYCRKK-CKVGERYEIGCLSGKLC 52
Query: 60 C 60
C
Sbjct: 53 C 53
>gi|239743236 PREDICTED: hypothetical protein XP_002342810 [Homo
sapiens]
Length = 140
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 22 GGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCCRAWWILMPIPTP 72
GG G EG + G RR++ K E + + R R+ WI+ +PTP
Sbjct: 80 GGSGKFEG----MGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIMSALPTP 126
>gi|239508911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 22 GGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCCRAWWILMPIPTP 72
GG G EG + G RR++ K E + + R R+ WI+ +PTP
Sbjct: 80 GGSGKFEG----MGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIMSALPTP 126
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 13 SILLSPGNKGGLGPAEGHCLNLSGVCRRDVC------KVVEDQIG-----ACRRKMKCC 60
+++ PG GG GP L+ + VC +++ Q G CR+K+ CC
Sbjct: 53 AVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCC 111
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 3 LHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCCR- 61
+ LLLL L +LLS GG C NL G CR K + KM C +
Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQ----RCWNLYGKCRYRCSKKERVYVYCINNKMCCVKP 56
Query: 62 ------AWW 64
WW
Sbjct: 57 KYQPKERWW 65
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 28 EGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
+GHC R +CK ED I CR + +CC
Sbjct: 26 DGHC--------RLLCKDGEDSIIRCRNRKRCC 50
>gi|154816178 chemokine (C-X-C motif) ligand 16 [Homo sapiens]
Length = 273
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 2 RLHLLLLILLFSILLSPGNKGGLGPAEGHC 31
R+ LLLL+LL L PGN G G G C
Sbjct: 29 RVLLLLLLLLLVYLTQPGN-GNEGSVTGSC 57
>gi|154816176 chemokine (C-X-C motif) ligand 16 [Homo sapiens]
Length = 273
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 2 RLHLLLLILLFSILLSPGNKGGLGPAEGHC 31
R+ LLLL+LL L PGN G G G C
Sbjct: 29 RVLLLLLLLLLVYLTQPGN-GNEGSVTGSC 57
>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
Length = 1547
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 18 PGNKGGLGPAEGHCLNLSGVC-RRDVCKVVEDQ 49
P N GG P E GVC VC VV+DQ
Sbjct: 208 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ 240
>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
Length = 1477
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 18 PGNKGGLGPAEGHCLNLSGVC-RRDVCKVVEDQ 49
P N GG P E GVC VC VV+DQ
Sbjct: 208 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ 240
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 7 LLILLFSILLSPGNKGGLGPAEGH----CLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
+ +LLF+I + PA G C +G CR D C E +G C CC
Sbjct: 3 IAVLLFAIFFFMSQ---VLPARGKFKEICERPNGSCR-DFCLETEIHVGRCLNSQPCC 56
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.146 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,156,797
Number of Sequences: 37866
Number of extensions: 175928
Number of successful extensions: 489
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 48
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.