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Search of human proteins with 239742234
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742234 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
(88 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753769 PREDICTED: similar to FSHD region gene 2 family, me... 186 3e-48
gi|239748331 PREDICTED: similar to FSHD region gene 2 family, me... 186 3e-48
gi|239742234 PREDICTED: similar to FSHD region gene 2 family, me... 186 3e-48
gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens] 128 1e-30
gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens] 128 1e-30
gi|185136049 FSHD region gene 2 family, member C [Homo sapiens] 127 2e-30
gi|124487405 FSHD region gene 2 family, member B [Homo sapiens] 122 6e-29
gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo ... 119 5e-28
gi|52353320 FSHD region gene 2 [Homo sapiens] 119 5e-28
gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo ... 118 1e-27
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 31 0.18
gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Ho... 31 0.18
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 31 0.24
gi|238814387 zinc finger, MYND domain containing 11 isoform b [H... 31 0.24
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 31 0.24
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 31 0.24
gi|31543148 hypothetical protein LOC79173 [Homo sapiens] 31 0.24
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 30 0.41
gi|169216502 PREDICTED: similar to hCG1653500 [Homo sapiens] 30 0.53
gi|169216745 PREDICTED: similar to hCG1653500 [Homo sapiens] 30 0.53
gi|56676330 HP1-BP74 [Homo sapiens] 30 0.53
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 28 1.2
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 28 1.2
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 28 1.2
gi|57546899 myeloid/lymphoid or mixed-lineage leukemia transloca... 28 1.5
gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocat... 28 1.5
gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens] 28 1.5
gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens] 28 1.5
gi|150456424 RW1 protein [Homo sapiens] 28 1.5
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 28 2.0
>gi|239753769 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 186 bits (473), Expect = 3e-48
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 61 GLEPNPKIQKRRRSPRRPSPKPETALLD 88
GLEPNPKIQKRRRSPRRPSPKPETALLD
Sbjct: 61 GLEPNPKIQKRRRSPRRPSPKPETALLD 88
>gi|239748331 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 186 bits (473), Expect = 3e-48
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 61 GLEPNPKIQKRRRSPRRPSPKPETALLD 88
GLEPNPKIQKRRRSPRRPSPKPETALLD
Sbjct: 61 GLEPNPKIQKRRRSPRRPSPKPETALLD 88
>gi|239742234 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 186 bits (473), Expect = 3e-48
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 61 GLEPNPKIQKRRRSPRRPSPKPETALLD 88
GLEPNPKIQKRRRSPRRPSPKPETALLD
Sbjct: 61 GLEPNPKIQKRRRSPRRPSPKPETALLD 88
>gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 128 bits (321), Expect = 1e-30
Identities = 60/66 (90%), Positives = 60/66 (90%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 61 GLEPNP 66
G EPNP
Sbjct: 61 GSEPNP 66
>gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 128 bits (321), Expect = 1e-30
Identities = 60/66 (90%), Positives = 60/66 (90%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 61 GLEPNP 66
G EPNP
Sbjct: 61 GSEPNP 66
>gi|185136049 FSHD region gene 2 family, member C [Homo sapiens]
Length = 282
Score = 127 bits (318), Expect = 2e-30
Identities = 59/66 (89%), Positives = 60/66 (90%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 61 GLEPNP 66
G +PNP
Sbjct: 61 GSDPNP 66
>gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
Length = 278
Score = 122 bits (306), Expect = 6e-29
Identities = 60/66 (90%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
Query: 61 GLEPNP 66
G EPNP
Sbjct: 60 GSEPNP 65
>gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo
sapiens]
Length = 278
Score = 119 bits (298), Expect = 5e-28
Identities = 59/66 (89%), Positives = 59/66 (89%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNED LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
Query: 61 GLEPNP 66
G EPNP
Sbjct: 60 GSEPNP 65
>gi|52353320 FSHD region gene 2 [Homo sapiens]
Length = 278
Score = 119 bits (298), Expect = 5e-28
Identities = 59/66 (89%), Positives = 59/66 (89%), Gaps = 1/66 (1%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNED LHCSSIQCSTDQPPFQQISFT KGSDEKKPFK KGKTA SHSSEKHIQRQ
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
Query: 61 GLEPNP 66
G EPNP
Sbjct: 60 GSEPNP 65
>gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo
sapiens]
Length = 381
Score = 118 bits (295), Expect = 1e-27
Identities = 60/77 (77%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQG 60
Query: 61 GL---EPNPKIQKRRRS 74
E N + K+ RS
Sbjct: 61 NCPEEECNLTLNKKSRS 77
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 5 NEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEP 64
NE+ HCS + +++ + S+ K K K + S H P
Sbjct: 745 NENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFH-SPSTTWSP 803
Query: 65 NPKIQKRRRSPRRPSPKPET 84
N + ++ P+ PSP+ ET
Sbjct: 804 NKDTPQEKKRPQSPSPRRET 823
>gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Homo
sapiens]
Length = 1288
Score = 31.2 bits (69), Expect = 0.18
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 2 GKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQVG 61
GK + L C+ I+ +T +PPF ++ + +K SS S+E
Sbjct: 827 GKAADIWSLGCTVIEMATGRPPFHELGSPQAAMFQVGMYKVHPPMPSSLSAEAQAFLLRT 886
Query: 62 LEPNPKIQ---------------KRRRSPRRP--SPKPETA 85
EP+P+++ KR RSP P +P+P A
Sbjct: 887 FEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDA 927
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 31 GKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRS--PRRPSPKPET 84
G+ K +G+ + SS SS + Q +V EP K +R +S P++ P+PET
Sbjct: 360 GRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPET 415
>gi|238814387 zinc finger, MYND domain containing 11 isoform b [Homo
sapiens]
Length = 567
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 31 GKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRS--PRRPSPKPET 84
G+ K +G+ + SS SS + Q +V EP K +R +S P++ P+PET
Sbjct: 359 GRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPET 414
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 31 GKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRS--PRRPSPKPET 84
G+ K +G+ + SS SS + Q +V EP K +R +S P++ P+PET
Sbjct: 360 GRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPET 415
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 10 LHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQ 69
LH SS C Q PFQ + G+ + P +G AS E + +P+ Q
Sbjct: 503 LHGSSPVCEVGQDPFQLLCTAGQSHPDGSPQQGACHKASMQLEETGVHAPGASQPSALDQ 562
Query: 70 KRR 72
+R
Sbjct: 563 SKR 565
>gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
Length = 637
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 7 DPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNP 66
DP S+ + Q P Q + +G + P +G G +AS +S+ H+ Q + P
Sbjct: 163 DPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKP 222
Query: 67 KIQK 70
+ +
Sbjct: 223 ETDR 226
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 32 KGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRSPRRPSPKP 82
K D+ K KGKG+ ++ ++KH+ G P + + + + PS +P
Sbjct: 65 KAEDKAKRAKGKGRGSAKAENDKHLSVGPGQGPGSAVDEHQDNVFFPSGRP 115
>gi|169216502 PREDICTED: similar to hCG1653500 [Homo sapiens]
Length = 133
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 24 FQQISFTGKGSDEKKPFKGKGKTASSHSSE 53
FQ+ S + K + +KP +G+G T SSHS +
Sbjct: 74 FQEKSHSRKTAASRKPEEGRGPTLSSHSDQ 103
>gi|169216745 PREDICTED: similar to hCG1653500 [Homo sapiens]
Length = 133
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 24 FQQISFTGKGSDEKKPFKGKGKTASSHSSE 53
FQ+ S + K + +KP +G+G T SSHS +
Sbjct: 74 FQEKSHSRKTAASRKPEEGRGPTLSSHSDQ 103
>gi|56676330 HP1-BP74 [Homo sapiens]
Length = 553
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 36 EKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRSPRRPSPK 81
+K P K GK AS +Q G +P PK+ +R RP PK
Sbjct: 459 KKTPAKSPGKAASV--------KQRGSKPAPKVSAAQRGKARPLPK 496
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 7 DPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNP 66
D L +I D+ F+ S+ K S +KP + GK A+ + + LEP
Sbjct: 344 DRGLEMKTILAENDEVKFK--SYCPKHSSHRKPEESLGKGAAQENGAPECSPRNPLEPFA 401
Query: 67 KIQKRRRSPRRPSPKPE 83
+++ R R S + +
Sbjct: 402 SLEQNREEAHRVSVRKQ 418
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 7 DPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNP 66
D L +I D+ F+ S+ K S +KP + GK A+ + + LEP
Sbjct: 344 DRGLEMKTILAENDEVKFK--SYCPKHSSHRKPEESLGKGAAQENGAPECSPRNPLEPFA 401
Query: 67 KIQKRRRSPRRPSPKPE 83
+++ R R S + +
Sbjct: 402 SLEQNREEAHRVSVRKQ 418
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 36 EKKPFKGKGKTASSHSSEKHIQRQVG-------LEPNPKIQKRR-RSP 75
EKKP K K ASS + R+ G L P P+ + RR RSP
Sbjct: 322 EKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSP 369
>gi|57546899 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform b [Homo sapiens]
Length = 1011
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 24 FQQISF---TGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRSP 75
FQ++S +GK E + +GKGK +S+HSS + R+ G NP SP
Sbjct: 294 FQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQR-GRKPGGGRNPGTTVSAASP 347
>gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform a [Homo sapiens]
Length = 1027
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 24 FQQISF---TGKGSDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRSP 75
FQ++S +GK E + +GKGK +S+HSS + R+ G NP SP
Sbjct: 294 FQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQR-GRKPGGGRNPGTTVSAASP 347
>gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens]
Length = 757
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFK---GKGKTASSHSSEKHIQ 57
MG + Y C + QP + S + F+ + KT S+ SE +
Sbjct: 136 MGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRARKKTVSASESEDRLV 195
Query: 58 RQVGLEPNPKIQKRRRS 74
+ EP+ ++ KR+ S
Sbjct: 196 AEQETEPSKELSKRQFS 212
>gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens]
Length = 757
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFK---GKGKTASSHSSEKHIQ 57
MG + Y C + QP + S + F+ + KT S+ SE +
Sbjct: 136 MGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRARKKTVSASESEDRLV 195
Query: 58 RQVGLEPNPKIQKRRRS 74
+ EP+ ++ KR+ S
Sbjct: 196 AEQETEPSKELSKRQFS 212
>gi|150456424 RW1 protein [Homo sapiens]
Length = 1883
Score = 28.1 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 41 KGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRSPRRPSPK 81
K KG S H S+ H + P P + P+ P P+
Sbjct: 1279 KSKGAKQSQHGSQHHAHSPLEQHPQPPLPPPVPQPQEPQPE 1319
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 34 SDEKKPFKGKGKTASSHSSEKHIQRQVGLEPNPKIQKRRRSPRRPSPKPETALLD 88
S EKK K KGK +++K + + + ++RRR +RP E D
Sbjct: 651 SKEKKKKKKKGKEEEEKAAKKKSKHKKSKDKEEGKEERRRRQQRPPRSRERTAAD 705
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,705,475
Number of Sequences: 37866
Number of extensions: 228425
Number of successful extensions: 843
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 111
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.