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Search of human proteins with 239742080
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo
sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens] 273 3e-74
gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo ... 273 3e-74
gi|189491675 hypothetical protein LOC84908 [Homo sapiens] 235 9e-63
gi|170295795 hypothetical protein LOC387071 [Homo sapiens] 218 1e-57
gi|29789367 forkhead box P4 isoform 2 [Homo sapiens] 32 0.20
gi|60498989 forkhead box P4 isoform 1 [Homo sapiens] 32 0.20
gi|110611218 ribosome binding protein 1 [Homo sapiens] 30 0.45
gi|110611220 ribosome binding protein 1 [Homo sapiens] 30 0.45
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 30 0.78
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 29 1.0
gi|210147558 hypothetical protein LOC202051 [Homo sapiens] 28 1.7
gi|32996737 lin-9 homolog [Homo sapiens] 28 2.3
gi|6912708 translocase of inner mitochondrial membrane 10 homolo... 28 2.3
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 28 2.9
gi|60498992 forkhead box P4 isoform 3 [Homo sapiens] 28 2.9
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term... 28 2.9
gi|161016765 tudor domain containing 12 [Homo sapiens] 28 2.9
gi|197209974 coiled-coil and C2 domain containing 2A isoform a [... 27 3.8
gi|197209817 coiled-coil and C2 domain containing 2A isoform b [... 27 3.8
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap... 27 3.8
gi|31657114 armadillo repeat containing 4 [Homo sapiens] 27 3.8
gi|122937396 coiled-coil domain containing 150 [Homo sapiens] 27 3.8
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 27 5.0
gi|26190614 rhotekin 2 [Homo sapiens] 27 5.0
gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member... 27 6.6
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 27 6.6
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 27 6.6
gi|45433501 elastin microfibril interfacer 3 [Homo sapiens] 27 6.6
gi|122937217 zinc finger protein 433 [Homo sapiens] 27 6.6
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 26 8.6
>gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]
Length = 135
Score = 273 bits (698), Expect = 3e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ
Sbjct: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
Query: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP
Sbjct: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
Query: 121 TMTKKMKEALLAIGK 135
TMTKKMKEALLAIGK
Sbjct: 121 TMTKKMKEALLAIGK 135
>gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo
sapiens]
Length = 135
Score = 273 bits (698), Expect = 3e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ
Sbjct: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
Query: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP
Sbjct: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
Query: 121 TMTKKMKEALLAIGK 135
TMTKKMKEALLAIGK
Sbjct: 121 TMTKKMKEALLAIGK 135
>gi|189491675 hypothetical protein LOC84908 [Homo sapiens]
Length = 138
Score = 235 bits (599), Expect = 9e-63
Identities = 114/135 (84%), Positives = 125/135 (92%)
Query: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
+ +++VQ+ VESMVKSLERENIRKMQGLMFRCS SCCEDSQAS++QVHQCI+ CHV LAQ
Sbjct: 4 LQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQ 63
Query: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
AQALVTSELEKFQD LA+CT CN+KAKDSI AGSKELQVKQQLD CVTKCVDDHMHLIP
Sbjct: 64 AQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIP 123
Query: 121 TMTKKMKEALLAIGK 135
TMTKKMKEALL+IGK
Sbjct: 124 TMTKKMKEALLSIGK 138
>gi|170295795 hypothetical protein LOC387071 [Homo sapiens]
Length = 138
Score = 218 bits (555), Expect = 1e-57
Identities = 108/135 (80%), Positives = 120/135 (88%)
Query: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
+ +++VQ+VV+SMVKSLERENI K QGLMF CS SCCEDSQA QQVHQCI+ C V LAQ
Sbjct: 4 LQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQ 63
Query: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
QALVTSELEKFQDHLA+CT CN+KAKDSI AGSKELQVKQQLDGCVTKCVDDH+HLI
Sbjct: 64 VQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIHLIS 123
Query: 121 TMTKKMKEALLAIGK 135
TMTKKMKEA+L+IGK
Sbjct: 124 TMTKKMKEAVLSIGK 138
>gi|29789367 forkhead box P4 isoform 2 [Homo sapiens]
Length = 667
Score = 31.6 bits (70), Expect = 0.20
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 45 QQVHQCIK--HCHVLLAQAQALVTSELEKF------QDHLAQCTTQCNNKAKDSIAAGSK 96
QQ+ Q + LL Q QAL+ +L+++ Q HL T Q K + A G+K
Sbjct: 116 QQMQQILSPPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNK 175
Query: 97 ELQVKQQL 104
+L +QQL
Sbjct: 176 QLAFQQQL 183
>gi|60498989 forkhead box P4 isoform 1 [Homo sapiens]
Length = 680
Score = 31.6 bits (70), Expect = 0.20
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 45 QQVHQCIK--HCHVLLAQAQALVTSELEKF------QDHLAQCTTQCNNKAKDSIAAGSK 96
QQ+ Q + LL Q QAL+ +L+++ Q HL T Q K + A G+K
Sbjct: 116 QQMQQILSPPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNK 175
Query: 97 ELQVKQQL 104
+L +QQL
Sbjct: 176 QLAFQQQL 183
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 30.4 bits (67), Expect = 0.45
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 11 ESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALV----- 65
E M++ L++ + Q ++R E+ LQ+ +KH ++ + + +
Sbjct: 706 EGMLRDLQKSVEEEEQ--VWRAKVGAAEEE---LQKSRVTVKHLEEIVEKLKGELESSDQ 760
Query: 66 ----TSELE-KFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKC--VDDHMHL 118
TS LE + + H+A + +C N AK+ L+ + QLD ++ D + L
Sbjct: 761 VREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELAL 820
Query: 119 IPTMTKKMK 127
+ +MK
Sbjct: 821 VRQQLSEMK 829
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 30.4 bits (67), Expect = 0.45
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 11 ESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALV----- 65
E M++ L++ + Q ++R E+ LQ+ +KH ++ + + +
Sbjct: 706 EGMLRDLQKSVEEEEQ--VWRAKVGAAEEE---LQKSRVTVKHLEEIVEKLKGELESSDQ 760
Query: 66 ----TSELE-KFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKC--VDDHMHL 118
TS LE + + H+A + +C N AK+ L+ + QLD ++ D + L
Sbjct: 761 VREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELAL 820
Query: 119 IPTMTKKMK 127
+ +MK
Sbjct: 821 VRQQLSEMK 829
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 29.6 bits (65), Expect = 0.78
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 32 CSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSI 91
CST+C A +Q+ + LL L +S + L + C N SI
Sbjct: 1466 CSTACASLLTAVSRQLQDRLTPMEALLQTRYGLYSSPFDPVLFDLEMSGSSCKNVYNSSI 1525
Query: 92 AAGSKELQVKQQLDG 106
S E+ + L G
Sbjct: 1526 GVQSDEIDLSDVLSG 1540
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 29.3 bits (64), Expect = 1.0
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 4 IKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQA 63
+K+ ++ ++KS ERE F E S+A +++ + + V L Q +
Sbjct: 830 MKLYFKIKPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKM----VSLLQEKN 885
Query: 64 LVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLD 105
+ +++ QD+LA +C+ K+ I +K ++ ++L+
Sbjct: 886 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLE 927
>gi|210147558 hypothetical protein LOC202051 [Homo sapiens]
Length = 205
Score = 28.5 bits (62), Expect = 1.7
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 40 SQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIA------- 92
S+ Q V + + A+ + L+ E EK Q L + K+ +A
Sbjct: 49 SKEEFQAVEKKLVEEKAAHAKTKVLLAKEEEKLQFALGEVEVLSKQLEKEKLAFEKALSS 108
Query: 93 AGSKELQVKQQLDGCVTKCVDDHMHLI 119
SK LQ + D +TKC + H+I
Sbjct: 109 VKSKVLQESSKKDQLITKCNEIESHII 135
>gi|32996737 lin-9 homolog [Homo sapiens]
Length = 558
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 17 LERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHL 76
+E IR++ G RCS++ E+ +++L+Q Q I+ LL Q + S+ + D +
Sbjct: 177 VEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIR----LLQQRKVADVSQFKDLPDEI 232
>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
[Homo sapiens]
Length = 90
Score = 28.1 bits (61), Expect = 2.3
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 60 QAQALVTS-ELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHL 118
+AQ L E+E D + T+ C+ K + KE ++ + C+ +CV ++ +
Sbjct: 5 RAQQLAAELEVEMMADMYNRMTSACHRKC---VPPHYKEAELSKGESVCLDRCVSKYLDI 61
Query: 119 IPTMTKKMKE 128
M KK+ E
Sbjct: 62 HERMGKKLTE 71
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta
[Homo sapiens]
Length = 1983
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 42 ASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVK 101
A+ + Q ++ HV + Q + + +L+ QD+LA +C+ K + K ++
Sbjct: 913 AAAEAKRQELEETHVSITQEKNDLALQLQAEQDNLADAEERCHLLIKSKVQLEGKVKELS 972
Query: 102 QQLD 105
++L+
Sbjct: 973 ERLE 976
>gi|60498992 forkhead box P4 isoform 3 [Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 2.9
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 45 QQVHQCIK--HCHVLLAQAQALVTSE----LEKFQDHLAQCTTQCNNKAKDSIAAGSKEL 98
QQ+ Q + LL Q QAL+ + ++ Q HL T Q K + A G+K+L
Sbjct: 116 QQMQQILSPPQLQALLQQQQALMLQQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNKQL 175
Query: 99 QVKQQL 104
+QQL
Sbjct: 176 AFQQQL 181
>gi|122937480 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 10 [Homo sapiens]
Length = 615
Score = 27.7 bits (60), Expect = 2.9
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCST------SCCEDS-----QASLQQ--- 46
MT+ K ++VV + L + N R+ Q CS+ S C S AS+++
Sbjct: 276 MTQEKQRRVVRKAFRKLAKLNRRRQQQTPSSCSSTSSSTASSCSSSPRTHESASVERMET 335
Query: 47 -VHQCIKHCHVLLAQAQALVTSELEKFQDH 75
VH + H + Q Q L EL++ DH
Sbjct: 336 LVHLVLSQDHTIRQQVQRL--HELDREIDH 363
>gi|161016765 tudor domain containing 12 [Homo sapiens]
Length = 395
Score = 27.7 bits (60), Expect = 2.9
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 23 RKMQGLMFRCSTSCCEDSQA---SLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQC 79
+K+ M S C+D + +L++ C+ +C L +A+V S +LA+C
Sbjct: 33 QKLNSAMNDFYNSTCQDIEIKPLTLEEGQVCVVYCEELKCWCRAIVKSITSSADQYLAEC 92
>gi|197209974 coiled-coil and C2 domain containing 2A isoform a
[Homo sapiens]
Length = 1620
Score = 27.3 bits (59), Expect = 3.8
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 48 HQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGC 107
H C HVL A+ L L + Q + A+ T ++++ G + Q LD
Sbjct: 418 HPCFSREHVLAAKLAQLYDQYLARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLD-T 476
Query: 108 VTKCVDDHMHLIPTMTKKMKEA 129
+ K ++++ I T+K ++A
Sbjct: 477 IQKTINEYKSEI-RQTRKFRDA 497
>gi|197209817 coiled-coil and C2 domain containing 2A isoform b
[Homo sapiens]
Length = 1512
Score = 27.3 bits (59), Expect = 3.8
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 48 HQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGC 107
H C HVL A+ L L + Q + A+ T ++++ G + Q LD
Sbjct: 369 HPCFSREHVLAAKLAQLYDQYLARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLD-T 427
Query: 108 VTKCVDDHMHLIPTMTKKMKEA 129
+ K ++++ I T+K ++A
Sbjct: 428 IQKTINEYKSEI-RQTRKFRDA 448
>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
sapiens]
Length = 1023
Score = 27.3 bits (59), Expect = 3.8
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 3 KIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCI-----KHCHVL 57
+IK Q+ + + + +EN M+G + +C+ +++++S Q C+ K +
Sbjct: 722 EIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPMR 781
Query: 58 LAQAQALVTSE 68
+A+ Q+L T E
Sbjct: 782 IAKQQSLETCE 792
>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
Length = 1044
Score = 27.3 bits (59), Expect = 3.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 4 IKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQA-SLQQVHQCIKHCHVLL 58
IK ++++E++VK+L EN ++Q C ED + L ++H +K LL
Sbjct: 669 IKAERIIENLVKNLNSEN-EQLQEHCAMAIYQCAEDKETRDLVRLHGGLKPLASLL 723
>gi|122937396 coiled-coil domain containing 150 [Homo sapiens]
Length = 1101
Score = 27.3 bits (59), Expect = 3.8
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 39 DSQASLQ----QVHQCIKHCHVLLAQAQALVTSELEKFQ----------DHLAQCTTQCN 84
D QA LQ + Q + ++LL A A +T+EL+ Q DHL QC
Sbjct: 373 DHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCI 432
Query: 85 NKAKDS 90
KA+D+
Sbjct: 433 QKAQDA 438
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 26.9 bits (58), Expect = 5.0
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 7 QKVVESMVKSLERENIR-KMQGLMFRCSTSC--CEDSQASLQQVHQCIKHCHVLLAQAQA 63
+K S ++ E E +R K + L R + C+D + Q+ + I L++
Sbjct: 266 EKQAASPLEPKELEELRDKNESLTMRLHETLKQCQDLKTEKSQMDRKINQ----LSEENG 321
Query: 64 LVTSELEKFQDHLAQCTTQCNNKAKDSIAAG----SKELQVKQQLDGCV--TKCVDDHMH 117
++ +L +F HL Q N ++ A K+ Q++++L + KC+++
Sbjct: 322 DLSFKLREFASHLQQLQDALNELTEEHSKATQEWLEKQAQLEKELSAALQDKKCLEEKNE 381
Query: 118 LIPTMTKKMKEAL 130
++ +++E L
Sbjct: 382 ILQGKLSQLEEHL 394
>gi|26190614 rhotekin 2 [Homo sapiens]
Length = 609
Score = 26.9 bits (58), Expect = 5.0
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 22 IRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTT 81
IR +G+ S S +D QV +K+ V A+ A TSEL+K ++ +A T
Sbjct: 32 IRMREGIWKLLSLSTQKD------QVLHAVKNLMVCNARLMAY-TSELQKLEEQIANQTG 84
Query: 82 QCNNK 86
+C+ K
Sbjct: 85 RCDVK 89
>gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member 11
[Homo sapiens]
Length = 1321
Score = 26.6 bits (57), Expect = 6.6
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 SLERENIRKMQGLMFRCSTSCCE-DSQASLQQVHQCIKHCHVLLAQAQALVT 66
++ R IR + L+ +TS + +S+A +Q+V I+H H +++ A L T
Sbjct: 568 AIARALIRNPKILLLDMATSALDNESEAMVQEVLSKIQHGHTIISVAHRLST 619
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 26.6 bits (57), Expect = 6.6
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 46 QVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLD 105
Q+ IK A +Q L + +++K L T+ K + + A + + + ++LD
Sbjct: 5341 QIQDKIKEVEQSKATSQEL-SRQIQKLAKDLTTILTKLKAKTDNVVQAKTDQKVLGEELD 5399
Query: 106 GCVTKCVD 113
GC +K ++
Sbjct: 5400 GCNSKLME 5407
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 26.6 bits (57), Expect = 6.6
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 46 QVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLD 105
Q+ IK A +Q L + +++K L T+ K + + A + + + ++LD
Sbjct: 5412 QIQDKIKEVEQSKATSQEL-SRQIQKLAKDLTTILTKLKAKTDNVVQAKTDQKVLGEELD 5470
Query: 106 GCVTKCVD 113
GC +K ++
Sbjct: 5471 GCNSKLME 5478
>gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]
Length = 766
Score = 26.6 bits (57), Expect = 6.6
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 23 RKMQGLMFRCSTSC------CEDSQASLQQVHQCIKHCHVLLAQAQALVTSELE 70
+K+QG+ C CE+ QA+ +++HQ + + L Q + + S+L+
Sbjct: 321 QKLQGVQSECDLRVQEVRRQCEEGQAASRRLHQSLDGRELALRQELSQLGSQLQ 374
>gi|122937217 zinc finger protein 433 [Homo sapiens]
Length = 673
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 27 GLMFRCSTSCCEDSQA-SLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNN 85
G F+C +S + S ++ ++C KHC +L S L FQ+HL T + ++
Sbjct: 316 GKAFKCPSSVRRHERTHSRKKPYEC-KHCGKVL--------SYLTSFQNHLGMHTGEISH 366
Query: 86 KAK 88
K K
Sbjct: 367 KCK 369
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 26.2 bits (56), Expect = 8.6
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 11 ESMVKSLERENI---RKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTS 67
+S +++L +E++ K Q ++ + + S C + + ++++ K +T
Sbjct: 19 KSKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRS--KPVTEGTGDIIKALTE 76
Query: 68 ELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIPTMTKKMK 127
L+ A+ QC + K++I ++KQ+++ VTK D H L + +K
Sbjct: 77 RLDALLLEKAETEQQCLSLKKENI-------KMKQEVEDSVTKMGDAHKELEQSHINYVK 129
Query: 128 E 128
E
Sbjct: 130 E 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.127 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,227,626
Number of Sequences: 37866
Number of extensions: 156165
Number of successful extensions: 547
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 43
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.