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Search of human proteins with 239742029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo
sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753530 PREDICTED: hypothetical protein [Homo sapiens] 703 0.0
gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo ... 703 0.0
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 33 0.28
gi|66529407 tensin [Homo sapiens] 32 0.62
gi|62241026 doublesex and mab-3 related transcription factor 1 [... 32 0.82
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 31 1.4
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 31 1.4
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 31 1.4
gi|145275189 specifically androgen-regulated protein isoform 1 [... 31 1.8
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 30 2.4
gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4 ... 29 5.3
gi|166235138 seizure related 6 homolog (mouse)-like 2 isoform 3 ... 29 5.3
gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2 ... 29 5.3
gi|6912612 seizure related 6 homolog (mouse)-like 2 isoform 1 [H... 29 5.3
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 29 5.3
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 29 5.3
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 29 6.9
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 29 6.9
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 29 6.9
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 29 6.9
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 29 6.9
gi|54292123 lysosomal trafficking regulator [Homo sapiens] 29 6.9
gi|28557703 outer dense fiber of sperm tails 3-like 1 [Homo sapi... 29 6.9
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] 28 9.0
>gi|239753530 PREDICTED: hypothetical protein [Homo sapiens]
Length = 340
Score = 703 bits (1815), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVGRKVH 60
MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVGRKVH
Sbjct: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVGRKVH 60
Query: 61 DMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDM 120
DMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDM
Sbjct: 61 DMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDM 120
Query: 121 VTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSP 180
VTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSP
Sbjct: 121 VTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSP 180
Query: 181 TFQIRTLRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETA 240
TFQIRTLRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETA
Sbjct: 181 TFQIRTLRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETA 240
Query: 241 PATMVSSFQASPIRQAEERVHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPSSQRASQI 300
PATMVSSFQASPIRQAEERVHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPSSQRASQI
Sbjct: 241 PATMVSSFQASPIRQAEERVHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPSSQRASQI 300
Query: 301 QSDMFHRPERQSSQKWPCPQLIFTTRTGPPRTPDPSLGGV 340
QSDMFHRPERQSSQKWPCPQLIFTTRTGPPRTPDPSLGGV
Sbjct: 301 QSDMFHRPERQSSQKWPCPQLIFTTRTGPPRTPDPSLGGV 340
>gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo
sapiens]
Length = 340
Score = 703 bits (1815), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVGRKVH 60
MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVGRKVH
Sbjct: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVGRKVH 60
Query: 61 DMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDM 120
DMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDM
Sbjct: 61 DMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDM 120
Query: 121 VTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSP 180
VTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSP
Sbjct: 121 VTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSP 180
Query: 181 TFQIRTLRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETA 240
TFQIRTLRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETA
Sbjct: 181 TFQIRTLRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETA 240
Query: 241 PATMVSSFQASPIRQAEERVHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPSSQRASQI 300
PATMVSSFQASPIRQAEERVHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPSSQRASQI
Sbjct: 241 PATMVSSFQASPIRQAEERVHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPSSQRASQI 300
Query: 301 QSDMFHRPERQSSQKWPCPQLIFTTRTGPPRTPDPSLGGV 340
QSDMFHRPERQSSQKWPCPQLIFTTRTGPPRTPDPSLGGV
Sbjct: 301 QSDMFHRPERQSSQKWPCPQLIFTTRTGPPRTPDPSLGGV 340
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 33.5 bits (75), Expect = 0.28
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 2/126 (1%)
Query: 62 MAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDMV 121
+ A G +R H A+A P + R ++ A+ P S + G+
Sbjct: 729 LLASVALGLDLRELHKAQAAEEPLPKEEKKKREGIFQRASKSRRSASPPTSLPSTCGEAS 788
Query: 122 TNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDK--CPIFCTRPPGTRRS 179
+ LPL + G T S K L + P ++C + P FC PG+ R
Sbjct: 789 SPPSLPLSSALGILSTPSFSTKCLLQMDSEDPLVDSAPVTCDSEMLTPDFCPTAPGSGRE 848
Query: 180 PTFQIR 185
P R
Sbjct: 849 PALMPR 854
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 32.3 bits (72), Expect = 0.62
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 190 SEAVASNPLLSRYDMLKMMPTCPLIR---RSGATGLLSAKAVAGYQTKSWLET------A 240
S +V S P D PT PL+ RSG+ G S A YQ+ S L T +
Sbjct: 1087 STSVGSFPSGESSDQGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPTVGSSYSS 1146
Query: 241 PATMVSSFQASPIRQAEER-----VHLSVQGTSCRMHPTTGSYSTTELWPRAKAIFPS 293
P + F +SP QA + VH +V G+ H T G+ + +AI PS
Sbjct: 1147 PDYSLQHFSSSPESQARAQFSVAGVH-TVPGSPQARHRTVGTNTPPSPGFGWRAINPS 1203
>gi|62241026 doublesex and mab-3 related transcription factor 1
[Homo sapiens]
Length = 373
Score = 32.0 bits (71), Expect = 0.82
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 212 PLIRRSGATGLLSAKAVAGYQTKSWLETAPATMVSSFQASPIRQAEE 258
P + SG L S+ ++ TK+ LE PA+ SSF +P+ + +E
Sbjct: 327 PSSQDSGLVSLSSSSPISNKSTKAVLECEPASEPSSFTVTPVIEEDE 373
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 48 THSKGHPVGRKVHDMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAW--LRILRATW 105
TH P GR+ + G A AG + L+PPPRR H Q + R L++ W
Sbjct: 358 THGPASPPGRRHDEEVGAAVLRAG-SGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNW 416
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 48 THSKGHPVGRKVHDMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAW--LRILRATW 105
TH P GR+ + G A AG + L+PPPRR H Q + R L++ W
Sbjct: 338 THGPASPPGRRHDEEVGAAVLRAG-SGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNW 396
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 48 THSKGHPVGRKVHDMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAW--LRILRATW 105
TH P GR+ + G A AG + L+PPPRR H Q + R L++ W
Sbjct: 338 THGPASPPGRRHDEEVGAAVLRAG-SGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNW 396
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 48 THSKGHPVGRKVHDMAGEAAWGAGVRSNHDAEAVHLSPPPRRHHMGSQAW--LRILRATW 105
TH P GR+ + G A AG + L+PPPRR H Q + R L++ W
Sbjct: 338 THGPASPPGRRHDEEVGAAVLRAG-SGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNW 396
>gi|145275189 specifically androgen-regulated protein isoform 1
[Homo sapiens]
Length = 601
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 173 PPGTRRSPTFQIRT---LRSSEAVASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVA 229
P GT P ++ + + SS + S S YD L L+ G L +A +
Sbjct: 8 PAGTGSEPVTRVGSCDSMMSSTSTRSGSSDSSYDFLSTEEKECLLFLEETIGSLDTEADS 67
Query: 230 GYQTKSWLETAPATMVSSFQASPIRQAEER 259
G T E+ PAT F+A PI Q R
Sbjct: 68 GLSTD---ESEPATTPRGFRALPITQPTPR 94
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 30.4 bits (67), Expect = 2.4
Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 16/214 (7%)
Query: 134 PDPTSLVSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTRRSPTFQIRTLRSSEAV 193
P PTS + + P + + + P T P T PT Q+ R S +
Sbjct: 1139 PKPTSQATRSRTNRSSVKTPEPV--VPTAPELQPSTSTDQPVTSE-PTSQVTRGRKSRSS 1195
Query: 194 ASNPLLSRYDMLKMMPTCPLIRRSGATGLLSAKAVAGYQTKSWLETAPATMVSSFQASPI 253
P L++ P+ R T +++A G + +S ++T + ++ + P
Sbjct: 1196 VKTPETVVPTALELQPSTSTDRP--VTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPS 1253
Query: 254 RQAEERVHLSVQGTSCRMHPTTGSYSTTE-LWPRAKAIFPSSQRASQIQSDMFHRPERQ- 311
++ V + R S T E + P A + PS+ + R R
Sbjct: 1254 TSTDQPVTSEPTYQATRGRKNRSSVKTPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSR 1313
Query: 312 ---SSQKWP------CPQLIFTTRTGPPRTPDPS 336
SS K P P+L +T T P TP P+
Sbjct: 1314 TNMSSVKTPETVVPTAPELQISTSTDQPVTPKPT 1347
>gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4
[Homo sapiens]
Length = 809
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 108 NAPHSHSTYR-GDMVTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKC 166
N + YR G + T SCLP P P P +E + PH DT +C C
Sbjct: 359 NVTTTDPEYRPGALATFSCLPGYALEPPGP-----PNAIECVDPTEPHWNDTEPACKAMC 413
Query: 167 PIFCTRPPGTRRSP 180
+ P G SP
Sbjct: 414 GGELSEPAGVVLSP 427
>gi|166235138 seizure related 6 homolog (mouse)-like 2 isoform 3
[Homo sapiens]
Length = 840
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 108 NAPHSHSTYR-GDMVTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKC 166
N + YR G + T SCLP P P P +E + PH DT +C C
Sbjct: 403 NVTTTDPEYRPGALATFSCLPGYALEPPGP-----PNAIECVDPTEPHWNDTEPACKAMC 457
Query: 167 PIFCTRPPGTRRSP 180
+ P G SP
Sbjct: 458 GGELSEPAGVVLSP 471
>gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2
[Homo sapiens]
Length = 910
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 108 NAPHSHSTYR-GDMVTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKC 166
N + YR G + T SCLP P P P +E + PH DT +C C
Sbjct: 473 NVTTTDPEYRPGALATFSCLPGYALEPPGP-----PNAIECVDPTEPHWNDTEPACKAMC 527
Query: 167 PIFCTRPPGTRRSP 180
+ P G SP
Sbjct: 528 GGELSEPAGVVLSP 541
>gi|6912612 seizure related 6 homolog (mouse)-like 2 isoform 1 [Homo
sapiens]
Length = 853
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 108 NAPHSHSTYR-GDMVTNSCLPLMGSYGPDPTSLVSPKGLEDLTFMAPHQADTILSCTDKC 166
N + YR G + T SCLP P P P +E + PH DT +C C
Sbjct: 403 NVTTTDPEYRPGALATFSCLPGYALEPPGP-----PNAIECVDPTEPHWNDTEPACKAMC 457
Query: 167 PIFCTRPPGTRRSP 180
+ P G SP
Sbjct: 458 GGELSEPAGVVLSP 471
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 29.3 bits (64), Expect = 5.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 85 PPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDMVTNSCLPLMGSYGPDPTSL 139
PPPR H+M S + G APH + G M + +P+ GP P L
Sbjct: 97 PPPRSHNMPSDGMV-----GGGPPAPHMQNQMNGQMPGPNHMPMQ---GPGPNQL 143
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 29.3 bits (64), Expect = 5.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 85 PPPRRHHMGSQAWLRILRATWGANAPHSHSTYRGDMVTNSCLPLMGSYGPDPTSL 139
PPPR H+M S + G APH + G M + +P+ GP P L
Sbjct: 97 PPPRSHNMPSDGMV-----GGGPPAPHMQNQMNGQMPGPNHMPMQ---GPGPNQL 143
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVG 56
M G FTAT E+VA G + C G K G++ T+ G P G
Sbjct: 330 MRGLPFTATAEEVVAFFG--------------QHCPITGGKEGILFVTYPDGRPTG 371
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVG 56
M G FTAT E+VA G + C G K G++ T+ G P G
Sbjct: 330 MRGLPFTATAEEVVAFFG--------------QHCPITGGKEGILFVTYPDGRPTG 371
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVG 56
M G FTAT E+VA G + C G K G++ T+ G P G
Sbjct: 330 MRGLPFTATAEEVVAFFG--------------QHCPITGGKEGILFVTYPDGRPTG 371
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVG 56
M G FTAT E+VA G + C G K G++ T+ G P G
Sbjct: 330 MRGLPFTATAEEVVAFFG--------------QHCPITGGKEGILFVTYPDGRPTG 371
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 1 MEGSIFTATGHEMVALTGGQGVQAVDTTAVGLESCSHKGAKAGLVKFTHSKGHPVG 56
M G FTAT E+VA G + C G K G++ T+ G P G
Sbjct: 330 MRGLPFTATAEEVVAFFG--------------QHCPITGGKEGILFVTYPDGRPTG 371
>gi|54292123 lysosomal trafficking regulator [Homo sapiens]
Length = 3801
Score = 28.9 bits (63), Expect = 6.9
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 212 PLIRRSGATGLLSAKAVAGYQTKSWLETAPATMVSSFQASPIRQAEERVHLSVQGTSCRM 271
P I S A GLL V+ + ++ E+ P ++SS+ +P VHL + G +C
Sbjct: 1415 PGILNSKAMGLLRRARVSRSKKEADRESFPHRLLSSWHIAP-------VHLPLLGQNCWP 1467
Query: 272 HPTTGSYSTTELWPRAKAI 290
H + G + LW + I
Sbjct: 1468 HLSEG--FSVSLWFNVECI 1484
>gi|28557703 outer dense fiber of sperm tails 3-like 1 [Homo
sapiens]
Length = 274
Score = 28.9 bits (63), Expect = 6.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 173 PPGTRRSPTFQIRTLRSSEAVASNPLLSRYDM-LKMMPTCPLIRRSGATGLLS 224
PPG RR+P + R + NP ++Y M L + P P+ R + L S
Sbjct: 132 PPGERRAPQYTFGYRRPYRVMDLNPAPNQYQMPLLLGPNTPVSRAAPCYSLAS 184
>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
Length = 1009
Score = 28.5 bits (62), Expect = 9.0
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 126 LPLM----GSYGPDPTSL----VSPKGLEDLTFMAPHQADTILSCTDKCPIFCTRPPGTR 177
LPL+ G +G P SL S L F APH++ LS +F P GT
Sbjct: 845 LPLVSTPAGPFGAPPASLGPAFASGLLLSSAGFCAPHRSQPNLSALSMPNLFGQMPMGTH 904
Query: 178 RSP 180
SP
Sbjct: 905 TSP 907
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,065,877
Number of Sequences: 37866
Number of extensions: 723436
Number of successful extensions: 1886
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1877
Number of HSP's gapped (non-prelim): 28
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.