Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287362 Sequence: fasta or formatted (282aa) NCBI GI: 239742014
Description:

PREDICTED: hypothetical protein XP_002342372

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         10           2
 C cysteine            4.3         12           2
 D aspartate           3.2          9           1
 E glutamate           2.1          6           1
 F phenylalanine       5.3         15           1
 G glycine             7.4         21           1
 H histidine           2.8          8           2
 I isoleucine          6.4         18           1
 K lysine              4.3         12           2
 L leucine            11.0         31           2
 M methionine          2.1          6           1
 N asparagine          2.5          7           1
 P proline             5.3         15           1
 Q glutamine           5.3         15           1
 R arginine            4.3         12           1
 S serine             11.7         33           2
 T threonine           5.3         15           2
 V valine              7.4         21           2
 W tryptophan          3.9         11           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342372 
LOC100291622          1.000   PREDICTED: similar to 1700112C13Rik protein 
PRSS36                0.206   protease, serine, 36 
MPN2                  0.206   marapsin 2 
ESSPL                 0.203   epidermis-specific serine protease-like protein [Ho...
PRSS27                0.201   marapsin 
PRSS21                0.194   testisin isoform 3 
TESSP1                0.192   testis-specific serine protease 1 
PRSS33                0.192   protease, serine, 33 
KLKB1                 0.189   plasma kallikrein B1 precursor 
TMPRSS13              0.185   transmembrane protease, serine 13 
PRSS21                0.183   testisin isoform 1 
LOC100293486          0.183   PREDICTED: similar to hCG2041452 
LOC100291379          0.183   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.183   PREDICTED: hypothetical protein XP_002342392 
PRSS8                 0.182   prostasin preproprotein 
TPSG1                 0.178   transmembrane tryptase preproprotein 
TPSAB1                0.178   tryptase alpha/beta 1 precursor 
F11                   0.178   coagulation factor XI precursor 
PRSS22                0.178   protease, serine, 22 
TESSP2                0.176   testis serine protease 2 
PRSS21                0.176   testisin isoform 2 
UNQ9391               0.175   hypothetical protein LOC203074 
TPSB2                 0.175   tryptase beta 2 precursor 
TMPRSS3               0.173   transmembrane protease, serine 3 isoform 1 
TMPRSS4               0.171   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.171   transmembrane protease, serine 4 isoform 1 
TSP50                 0.171   testes-specific protease 50 
TMPRSS7               0.166   transmembrane protease, serine 7 
OVCH2                 0.164   ovochymase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press