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Search of human proteins with 116256344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens]
(502 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens] 1003 0.0
gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens] 969 0.0
gi|22748695 DEP domain containing 4 [Homo sapiens] 144 1e-34
gi|38488716 DEP domain containing 1 isoform b [Homo sapiens] 127 2e-29
gi|223633999 DEP domain containing 1B isoform 1 [Homo sapiens] 115 9e-26
gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens] 84 2e-16
gi|166295188 DEP domain containing 1 isoform a [Homo sapiens] 72 9e-13
gi|70980531 GGA binding partner [Homo sapiens] 39 0.014
gi|38569484 kinesin family member 21A [Homo sapiens] 36 0.093
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 35 0.12
gi|22749359 phosphatidylinositol-3-phosphate 5-kinase type III i... 35 0.12
gi|189571664 DEP domain containing 6 [Homo sapiens] 33 0.46
gi|5032031 RNA binding motif protein 5 [Homo sapiens] 33 0.46
gi|208609990 nucleoporin 93kDa [Homo sapiens] 33 0.79
gi|223718070 retinoic acid receptor, alpha isoform 4 [Homo sapiens] 31 3.0
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 31 3.0
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 31 3.0
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 31 3.0
gi|115583670 T-cell lymphoma invasion and metastasis 1 [Homo sap... 31 3.0
gi|126116589 fibrocystin L [Homo sapiens] 31 3.0
gi|108773787 retinoblastoma 1 [Homo sapiens] 30 3.9
gi|164519076 transmembrane 9 superfamily protein member 4 [Homo ... 30 5.1
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 30 6.7
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens] 30 6.7
gi|214010216 SMC6 protein [Homo sapiens] 30 6.7
gi|13375848 SMC6 protein [Homo sapiens] 30 6.7
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 29 8.7
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 29 8.7
>gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens]
Length = 502
Score = 1003 bits (2594), Expect = 0.0
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 MRGLCEFYWQEFGIKGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGS 60
MRGLCEFYWQEFGIKGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGS
Sbjct: 1 MRGLCEFYWQEFGIKGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGS 60
Query: 61 EAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSC 120
EAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSC
Sbjct: 61 EAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSC 120
Query: 121 SLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVN 180
SLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVN
Sbjct: 121 SLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVN 180
Query: 181 ISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYL 240
ISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYL
Sbjct: 181 ISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYL 240
Query: 241 DRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRY 300
DRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRY
Sbjct: 241 DRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRY 300
Query: 301 YSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAA 360
YSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAA
Sbjct: 301 YSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAA 360
Query: 361 NPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 420
NPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI
Sbjct: 361 NPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 420
Query: 421 VSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKE 480
VSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKE
Sbjct: 421 VSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKE 480
Query: 481 KKKLLGQFYKCHPDIFIEHFGD 502
KKKLLGQFYKCHPDIFIEHFGD
Sbjct: 481 KKKLLGQFYKCHPDIFIEHFGD 502
>gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens]
Length = 511
Score = 969 bits (2505), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 16 GFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKY 75
GFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKY
Sbjct: 25 GFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKY 84
Query: 76 FGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQL 135
FGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQL
Sbjct: 85 FGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQL 144
Query: 136 GKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQ 195
GKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQ
Sbjct: 145 GKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQ 204
Query: 196 EETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDE 255
EETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDE
Sbjct: 205 EETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDE 264
Query: 256 WLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVH 315
WLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVH
Sbjct: 265 WLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVH 324
Query: 316 NGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM 375
NGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM
Sbjct: 325 NGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM 384
Query: 376 VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPN 435
VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPN
Sbjct: 385 VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPN 444
Query: 436 RDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDI 495
RDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDI
Sbjct: 445 RDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDI 504
Query: 496 FIEHFGD 502
FIEHFGD
Sbjct: 505 FIEHFGD 511
>gi|22748695 DEP domain containing 4 [Homo sapiens]
Length = 294
Score = 144 bits (364), Expect = 1e-34
Identities = 87/233 (37%), Positives = 133/233 (57%), Gaps = 13/233 (5%)
Query: 23 PFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIP 82
PF AT +W II++LQ QVE+K+RRH L+ + DCF GS+AVDV+ SHL+QN DI
Sbjct: 57 PFQATQLWDGIIHSLQAQVEIKRRRHHLQTYKDCFTGSDAVDVVLSHLMQNTCLSSNDIS 116
Query: 83 RAKVVRVCQALMDYKVFEAV-PTKVFGKDKKPTFEDSSCSLYRFTTIPNQDS------QL 135
K V +CQ LM++KVFE V K+F K+K+ FEDS+ SLYRF + N+ S Q
Sbjct: 117 CLKGVHLCQVLMNHKVFEPVGMKKLFKKEKELEFEDSNISLYRF--LGNKSSYDCCKRQK 174
Query: 136 GKENKLYSPARYADALFK---SSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINE 192
EN+ R + + +I +E+L ++ PA P++ + +
Sbjct: 175 DAENEFNETLRPGYEMISNPLAQEIGEERIEELIHTINGNPALCPNITVQKPFLRLSKED 234
Query: 193 VWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGIL 245
VW+E+T+ LLQL+ LP LD++L+ + Q ++ +V ++ LDR ++
Sbjct: 235 VWKEQTLLCLLQLIHLPFLDNILEPPVKTQNL-QLNKEEDLVITNTCLDRELI 286
>gi|38488716 DEP domain containing 1 isoform b [Homo sapiens]
Length = 527
Score = 127 bits (320), Expect = 2e-29
Identities = 113/507 (22%), Positives = 229/507 (45%), Gaps = 50/507 (9%)
Query: 23 PFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIP 82
P+ AT +W+ + + + + ++K R K++ +CF EAVD ++ L N FG ++
Sbjct: 10 PYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNSNFGP-EVT 68
Query: 83 RAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRF------TTIPNQDSQLG 136
R + +++ + + V E + + +G + D + L+RF T+P + +L
Sbjct: 69 RQQTIQLLRKFLKNHVIEDIKGR-WGSEN----VDDNNQLFRFPATSPLKTLPRRYPEL- 122
Query: 137 KENKLYSPARYADALFKSSDIRSAS--------LEDLWENLSLKPANSPHVNI--SATLS 186
++N + + ++ D++FK ++ + ++ E + + N N + LS
Sbjct: 123 RKNNIENFSKDKDSIFKLRNLSRRTPKRHGLHLSQENGEKIKHEIINEDQENAIDNRELS 182
Query: 187 PQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILK 246
+ + EVW+ + L ++ +P L+ ++ ++ +P Q M N +N RG++
Sbjct: 183 QEDVEEVWRYVILIYLQTILGVPSLEEVINPKQVIP-------QYIMYNMANTSKRGVVI 235
Query: 247 AYSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSRE 305
+ S + W+ +A+ CL P + P +++ + E
Sbjct: 236 LQNKSDDLPHWVLSAMKCLANWP-------RSNDMNNPTYVGFERDVFRTIADYFLDLPE 288
Query: 306 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 363
PLL ++ I LL +A++A QL LL NR + + L+ ++ ++ N
Sbjct: 289 PLLTFEYYELFVNILGLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQNVD 348
Query: 364 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 420
KL R ++ FS+ ++ + +L + LV FLMDH +++ ++P L
Sbjct: 349 MPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTA 408
Query: 421 VSVKLMAIQNGRDPNRDAG-------YIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDED 473
V L ++ G N G Y YC++I +++ T++ + LL+ + ++
Sbjct: 409 VEKHLDYLKKGHIENPGDGLFAPLPTYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKN 468
Query: 474 SKLSAKEKKKLLGQFYKCHPDIFIEHF 500
L KEK+K L QF K +P I+ + F
Sbjct: 469 RSLPLKEKRKKLKQFQKEYPLIYQKRF 495
>gi|223633999 DEP domain containing 1B isoform 1 [Homo sapiens]
Length = 529
Score = 115 bits (288), Expect = 9e-26
Identities = 123/507 (24%), Positives = 228/507 (44%), Gaps = 48/507 (9%)
Query: 19 VAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGD 78
V P+ AT +W+ + + ++ ++K R R K + CF +EAVD + L ++ FG
Sbjct: 6 VGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGP 65
Query: 79 VDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTI---------- 128
++ R + V++ + + V E + GK + FED+ LYRF
Sbjct: 66 -EVTRKQTVQLLKKFLKNHVIEDIK----GKWGEEDFEDNR-HLYRFPPSSPLKPYPKKP 119
Query: 129 PNQDSQLG-KENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSP 187
PNQ + E P + + + ++ + ++++ + + L+
Sbjct: 120 PNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTE 179
Query: 188 QVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA 247
+ E+W+ T+ L +++ L L+ +L + K + N + +G++
Sbjct: 180 ANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKF-------IIHNVYSVSKQGVVIL 232
Query: 248 YSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSS-RE 305
S+E W+ +A+ CL P+ S +QP K++ F I YY +E
Sbjct: 233 DDKSKELPHWVLSAMKCLANWPNC-------SDLKQPMYLGFEKDV-FKTIADYYGHLKE 284
Query: 306 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 363
PLL HL D + LL K ++A+EA Q+ LL +NR + + L+ MA + N
Sbjct: 285 PLLTFHLFDAFVSVLGLLQ--KEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
Query: 364 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 420
L R ++ + FS+ I+ D +L + LV FLMD+ +++ K+P L
Sbjct: 343 MPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTS 402
Query: 421 VSVKLMAIQNG--RDPNRDAGYI-----YCQRIDQRDYSNNTEKTTKDELLNLLKTLDED 473
+ ++ ++ + P D +C++I ++ +++ L LL+ + D
Sbjct: 403 IEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITD 462
Query: 474 SKLSAKEKKKLLGQFYKCHPDIFIEHF 500
+KLS KEKKK L QF K +P+++ E F
Sbjct: 463 AKLSNKEKKKKLKQFQKSYPEVYQERF 489
>gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens]
Length = 467
Score = 84.3 bits (207), Expect = 2e-16
Identities = 100/425 (23%), Positives = 187/425 (44%), Gaps = 41/425 (9%)
Query: 19 VAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGD 78
V P+ AT +W+ + + ++ ++K R R K + CF +EAVD + L ++ FG
Sbjct: 6 VGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGP 65
Query: 79 VDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTI---------- 128
++ R + V++ + + V E + GK + FED+ LYRF
Sbjct: 66 -EVTRKQTVQLLKKFLKNHVIEDIK----GKWGEEDFEDNR-HLYRFPPSSPLKPYPKKP 119
Query: 129 PNQDSQLG-KENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSP 187
PNQ + E P + + + ++ + ++++ + + L+
Sbjct: 120 PNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTE 179
Query: 188 QVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA 247
+ E+W+ T+ L +++ L L+ +L + K + N + +G++
Sbjct: 180 ANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKF-------IIHNVYSVSKQGVVIL 232
Query: 248 YSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSS-RE 305
S+E W+ +A+ CL P+ S +QP K++ F I YY +E
Sbjct: 233 DDKSKELPHWVLSAMKCLANWPNC-------SDLKQPMYLGFEKDV-FKTIADYYGHLKE 284
Query: 306 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 363
PLL HL D + LL K ++A+EA Q+ LL +NR + + L+ MA + N
Sbjct: 285 PLLTFHLFDAFVSVLGLLQ--KEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
Query: 364 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 420
L R ++ + FS+ I+ D +L + LV FLMD+ +++ K+P L
Sbjct: 343 MPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTS 402
Query: 421 VSVKL 425
+ ++
Sbjct: 403 IEERV 407
>gi|166295188 DEP domain containing 1 isoform a [Homo sapiens]
Length = 811
Score = 72.4 bits (176), Expect = 9e-13
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 11/200 (5%)
Query: 312 SDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPSEFKLQKE 370
S + G LL +A++A QL LL NR + + L+ ++ ++ N KL
Sbjct: 580 SSMLTGTQSLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQNVDMPKLHDA 639
Query: 371 SDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMA 427
R ++ FS+ ++ + +L + LV FLMDH +++ ++P L V L
Sbjct: 640 MGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTAVEKHLDY 699
Query: 428 IQNGRDPNRDAG-------YIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKE 480
++ G N G Y YC++I +++ T++ + LL+ + ++ L KE
Sbjct: 700 LKKGHIENPGDGLFAPLPTYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKNRSLPLKE 759
Query: 481 KKKLLGQFYKCHPDIFIEHF 500
K+K L QF K +P I+ + F
Sbjct: 760 KRKKLKQFQKEYPLIYQKRF 779
Score = 71.6 bits (174), Expect = 2e-12
Identities = 56/263 (21%), Positives = 124/263 (47%), Gaps = 31/263 (11%)
Query: 23 PFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIP 82
P+ AT +W+ + + + + ++K R K++ +CF EAVD ++ L N FG ++
Sbjct: 10 PYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNSNFGP-EVT 68
Query: 83 RAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRF------TTIPNQDSQLG 136
R + +++ + + V E + + +G + D + L+RF T+P + +L
Sbjct: 69 RQQTIQLLRKFLKNHVIEDIKGR-WGSEN----VDDNNQLFRFPATSPLKTLPRRYPEL- 122
Query: 137 KENKLYSPARYADALFKSSDIRSAS--------LEDLWENLSLKPANSPHVNI--SATLS 186
++N + + ++ D++FK ++ + ++ E + + N N + LS
Sbjct: 123 RKNNIENFSKDKDSIFKLRNLSRRTPKRHGLHLSQENGEKIKHEIINEDQENAIDNRELS 182
Query: 187 PQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILK 246
+ + EVW+ + L ++ +P L+ ++ ++ +P Q M N +N RG++
Sbjct: 183 QEDVEEVWRYVILIYLQTILGVPSLEEVINPKQVIP-------QYIMYNMANTSKRGVVI 235
Query: 247 AYSDSQE-DEWLSAAIDCLEYLP 268
+ S + W+ +A+ CL P
Sbjct: 236 LQNKSDDLPHWVLSAMKCLANWP 258
>gi|70980531 GGA binding partner [Homo sapiens]
Length = 441
Score = 38.5 bits (88), Expect = 0.014
Identities = 74/352 (21%), Positives = 139/352 (39%), Gaps = 56/352 (15%)
Query: 176 SPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVP------KIPQPKR 229
S H ++ +L P + + TI + D S ++ Q+ + K+ + ++
Sbjct: 93 STHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEIKLKVSEEEK 152
Query: 230 Q------STMVNSSNYLDRGILKA-----------YSDSQE------DEWLSAAIDCLEY 266
Q +++ N L++G LK Y + QE ++ A + L
Sbjct: 153 QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 212
Query: 267 LPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLN----HLSDVHNGIAELL 322
+ D+ + S +Q + +++ AI + E LLN L ++ + ELL
Sbjct: 213 IVDEYKALLQSSVKQQ---VEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELL 269
Query: 323 VNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRMVVKRIFS 382
E ++ +Q ++L+ EE +R + AA KL+KE+ V+K +
Sbjct: 270 KEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAA-----KLEKEAVKDAVLKVVEE 324
Query: 383 KAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRD---AG 439
+ KNL K + L+ +H KD K+ + K AIQ R +++ A
Sbjct: 325 ----ERKNLEKAHAEERELWKTEHAKDQEKVSQEIQK-------AIQEQRKISQETVKAA 373
Query: 440 YIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKC 491
I Q+ ++ K T+DEL+ +K ++ + L F C
Sbjct: 374 IIEEQKRSEKAV-EEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSC 424
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 35.8 bits (81), Expect = 0.093
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 163 EDLWENLSLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPL--LDSLLKQQEA 220
E+L +NL+ A +P+ + S+T SP +++ +ETI +++DL L+ L ++++
Sbjct: 501 ENLRKNLTRATARAPYFSGSSTFSPTILSS--DKETI----EIIDLAKKDLEKLKRKEKR 554
Query: 221 VPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFP 280
K K +T + ++G+ + ++ E E D + ++ E
Sbjct: 555 KKKSVAGKEDNTDTDQEKKEEKGVSERENNELEVEESQEVSDHEDEEEEEEEEEDDIDGG 614
Query: 281 EQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKL 340
E D +D S + N+ +D+ N E+ + K LE +Q L+
Sbjct: 615 ESSDESD--------------SESDEKANYQADLANITCEIAIKQKLIDELENSQKRLQT 660
Query: 341 LDFQNREEFRRL 352
L Q E+ L
Sbjct: 661 LKKQYEEKLMML 672
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 35.4 bits (80), Expect = 0.12
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 29 VWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVR 88
+W I + + +E + R+ L+ H +C VG E V + LI+N + RA+ +
Sbjct: 358 LWKKICHH-SSGMEFQDHRYWLRTHPNCIVGKELV----NWLIRNGHIA----TRAQAIA 408
Query: 89 VCQALMDYKVFEAVP--TKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPAR 146
+ QA++D + + V ++F +D+ + + + T P+ DS E P+
Sbjct: 409 IGQAMVDGRWLDCVSHHDQLF-RDEYALYRPLQSTEFSETPSPDSDSVNSVEGH-SEPSW 466
Query: 147 YADALFKSSDIRSASLEDLWENLSLKPANSPHVNISA 183
+ D F SD + E+ +NL+ + S ++S+
Sbjct: 467 FKDIKFDDSDTEQIA-EEGDDNLANSASPSKRTSVSS 502
>gi|22749359 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 3 [Homo sapiens]
Length = 451
Score = 35.4 bits (80), Expect = 0.12
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 29 VWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVR 88
+W I + + +E + R+ L+ H +C VG E V + LI+N + RA+ +
Sbjct: 261 LWKKICHH-SSGMEFQDHRYWLRTHPNCIVGKELV----NWLIRNGHIA----TRAQAIA 311
Query: 89 VCQALMDYKVFEAVP--TKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPAR 146
+ QA++D + + V ++F +D+ + + + T P+ DS E P+
Sbjct: 312 IGQAMVDGRWLDCVSHHDQLF-RDEYALYRPLQSTEFSETPSPDSDSVNSVEGH-SEPSW 369
Query: 147 YADALFKSSDIRSASLEDLWENLSLKPANSPHVNISA 183
+ D F SD + E+ +NL+ + S ++S+
Sbjct: 370 FKDIKFDDSDTEQIA-EEGDDNLANSASPSKRTSVSS 405
>gi|189571664 DEP domain containing 6 [Homo sapiens]
Length = 409
Score = 33.5 bits (75), Expect = 0.46
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 37 LQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDY 96
L + +K RRH LK + +CFV E +D LI++K D R +++ Q L D
Sbjct: 44 LHEEKVIKDRRHHLKTYPNCFVAKELID----WLIEHKEASD----RETAIKLMQKLADR 95
Query: 97 KVFEAV 102
+ V
Sbjct: 96 GIIHHV 101
>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
Length = 815
Score = 33.5 bits (75), Expect = 0.46
Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 44/261 (16%)
Query: 136 GKENKLYSPARYADALFKSSDIRSASLEDLWENL--SLKPANSPHVNISATLSPQVINEV 193
GKE K ++ A + K + + SL EN S +P NS + E
Sbjct: 525 GKEKKEKPKSKTAQQIAKDMERWAKSLNKQKENFKNSFQPVNS-------------LREE 571
Query: 194 WQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQE 253
+ E+ +L ++Q+ +P++ + + N L RG++ AYS +
Sbjct: 572 ERRESAAADAGFALFEKKGALAERQQLIPELVRNG------DEENPLKRGLVAAYSGDSD 625
Query: 254 DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNH--L 311
+E E+ + ++ K++ R + +++ L+ H L
Sbjct: 626 NE-----------------EELVERLESEEEKLADWKKMACLLCRRQFPNKDALVRHQQL 668
Query: 312 SDVHNGIAELLVNGK-TEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKE 370
SD+H ++ + +E LEA +L + + +++R RR Y + P E K +K+
Sbjct: 669 SDLHKQNMDIYRRSRLSEQELEALELREREMKYRDRAAERREKYGI---PEPPEPKRKKQ 725
Query: 371 SDNRMVVKRIFSKAIVDNKNL 391
D V +K +D+ N+
Sbjct: 726 FDAGTVNYEQPTKDGIDHSNI 746
>gi|208609990 nucleoporin 93kDa [Homo sapiens]
Length = 819
Score = 32.7 bits (73), Expect = 0.79
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 406 HQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDEL-L 464
+ KD P T +K+ A++N DP + A Y R D D + T+D L L
Sbjct: 357 NSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWL 416
Query: 465 NLLKTLDEDSKLSAKEKKKLLGQFYK 490
L + +D S+ + + L QF K
Sbjct: 417 KLNQVCFDDDGTSSPQDRLTLSQFQK 442
>gi|223718070 retinoic acid receptor, alpha isoform 4 [Homo sapiens]
Length = 365
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 281 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 311
EQPDR D+++E L +A+ Y R P H+
Sbjct: 246 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 276
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 281 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 311
EQPDR D+++E L +A+ Y R P H+
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 373
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 281 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 311
EQPDR D+++E L +A+ Y R P H+
Sbjct: 338 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 368
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 281 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 311
EQPDR D+++E L +A+ Y R P H+
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 373
>gi|115583670 T-cell lymphoma invasion and metastasis 1 [Homo sapiens]
Length = 1591
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 281 EQPDRTDLVKELLFDAIGR--YYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLL 338
E+ ++ D K++LF G YY+ R L + H + ++LV KT+ A +A
Sbjct: 1113 EKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKA----- 1167
Query: 339 KLLDFQNREE 348
LD QN ++
Sbjct: 1168 -FLDAQNPKQ 1176
>gi|126116589 fibrocystin L [Homo sapiens]
Length = 4243
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 109 KDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWEN 168
K P E +SCSLY++ I N E ++ PA ++ + +S +L DLW
Sbjct: 531 KVTSPCVEANSCSLYQYRLIYNM------EKTVFLPADASEFILQS------ALNDLW-- 576
Query: 169 LSLKPANSPHVNISATLSPQ 188
S+KP V + T +PQ
Sbjct: 577 -SIKPDT---VQVIRTQNPQ 592
>gi|108773787 retinoblastoma 1 [Homo sapiens]
Length = 928
Score = 30.4 bits (67), Expect = 3.9
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 290 KELLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEF 349
K L D+I + + R P ++L + N I + + Q L+ +L+ + +
Sbjct: 341 KTLQTDSIDSFETQRTPRKSNLDEEVNVIPP---HTPVRTVMNTIQQLMMILNSASDQPS 397
Query: 350 RRLL-YFMAVAANPSEFKLQKESDNRMVVKRIFSKAI 385
L+ YF NP E L++ D + K F+KA+
Sbjct: 398 ENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAV 434
>gi|164519076 transmembrane 9 superfamily protein member 4 [Homo
sapiens]
Length = 642
Score = 30.0 bits (66), Expect = 5.1
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 99 FEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIR 158
FE +P + +D K E SSC+L T Q+ KEN+LY ++ SDI+
Sbjct: 207 FEVIPQSIRLEDLKAD-EKSSCTLPEGTNSSPQEIDPTKENQLYFT---YSVHWEESDIK 262
Query: 159 SASLEDLWENLS 170
AS D + +S
Sbjct: 263 WASRWDTYLTMS 274
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 29.6 bits (65), Expect = 6.7
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 170 SLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKR 229
+L P ++P + A ++P V ++ Q++ +G+ PLL LLK+ +P P+
Sbjct: 94 TLPPGSAP---LEAPMTP-VTDDSPQKKMLGQKATPPPSPLLSELLKKGSLLPTSPRLVN 149
Query: 230 QSTMVNSSNYLD 241
+S M +S +L+
Sbjct: 150 ESEMAVASGHLN 161
>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
Length = 951
Score = 29.6 bits (65), Expect = 6.7
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 170 SLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKR 229
+L P ++P + A ++P V ++ Q++ +G+ PLL LLK+ +P P+
Sbjct: 234 TLPPGSAP---LEAPMTP-VTDDSPQKKMLGQKATPPPSPLLSELLKKGSLLPTSPRLVN 289
Query: 230 QSTMVNSSNYLD 241
+S M +S +L+
Sbjct: 290 ESEMAVASGHLN 301
>gi|214010216 SMC6 protein [Homo sapiens]
Length = 1091
Score = 29.6 bits (65), Expect = 6.7
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 19/213 (8%)
Query: 298 GRYYSSREPLLNHLS-DVHNGIAELL--VNGKTEIALEATQLLLKL-LDFQNREEF--RR 351
GRYYSS LS DV + I++L V KT L Q L L D ++ EE R
Sbjct: 647 GRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNEELLKRC 706
Query: 352 LLYF----MAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFL---- 403
L++ M + N SE + E +N + + + D +K K ++ +
Sbjct: 707 QLHYKELKMKIRKNISEIR---ELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQK 763
Query: 404 --MDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKD 461
M+H K + + + K+ + DP +D + +D + + +
Sbjct: 764 ENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQK 823
Query: 462 ELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPD 494
E L+ L + + KE ++ + Q + P+
Sbjct: 824 EHLDTLNKKKRELDMKEKELEEKMSQARQICPE 856
>gi|13375848 SMC6 protein [Homo sapiens]
Length = 1091
Score = 29.6 bits (65), Expect = 6.7
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 19/213 (8%)
Query: 298 GRYYSSREPLLNHLS-DVHNGIAELL--VNGKTEIALEATQLLLKL-LDFQNREEF--RR 351
GRYYSS LS DV + I++L V KT L Q L L D ++ EE R
Sbjct: 647 GRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNEELLKRC 706
Query: 352 LLYF----MAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFL---- 403
L++ M + N SE + E +N + + + D +K K ++ +
Sbjct: 707 QLHYKELKMKIRKNISEIR---ELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQK 763
Query: 404 --MDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKD 461
M+H K + + + K+ + DP +D + +D + + +
Sbjct: 764 ENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQK 823
Query: 462 ELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPD 494
E L+ L + + KE ++ + Q + P+
Sbjct: 824 EHLDTLNKKKRELDMKEKELEEKMSQARQICPE 856
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 29.3 bits (64), Expect = 8.7
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 43/177 (24%)
Query: 260 AIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLL-NHLSDVHNGI 318
AIDC+ Y D D++K+ D EPL+ N LS+ I
Sbjct: 1132 AIDCVNYEGQSAY-----------DVADMLKQYFRDL-------PEPLMTNKLSETFLQI 1173
Query: 319 AELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYF-----------------MAVAAN 361
+ + + L+A + + LL +NRE + LLYF +AV
Sbjct: 1174 YQYVPKDQR---LQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 1230
Query: 362 PSEF---KLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVL-FLMDHQKDVFKIP 414
PS F L++E+ + V++R S D K+L++ L ++ K +F++P
Sbjct: 1231 PSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKLFQVP 1287
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 29.3 bits (64), Expect = 8.7
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 43/177 (24%)
Query: 260 AIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLL-NHLSDVHNGI 318
AIDC+ Y D D++K+ D EPL+ N LS+ I
Sbjct: 695 AIDCVNYEGQSAY-----------DVADMLKQYFRDL-------PEPLMTNKLSETFLQI 736
Query: 319 AELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYF-----------------MAVAAN 361
+ + + L+A + + LL +NRE + LLYF +AV
Sbjct: 737 YQYVPKDQR---LQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 793
Query: 362 PSEF---KLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVL-FLMDHQKDVFKIP 414
PS F L++E+ + V++R S D K+L++ L ++ K +F++P
Sbjct: 794 PSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKLFQVP 850
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,010,457
Number of Sequences: 37866
Number of extensions: 763607
Number of successful extensions: 2094
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2068
Number of HSP's gapped (non-prelim): 34
length of query: 502
length of database: 18,247,518
effective HSP length: 107
effective length of query: 395
effective length of database: 14,195,856
effective search space: 5607363120
effective search space used: 5607363120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.