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Search of human proteins with 116256342
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens]
(511 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens] 1016 0.0
gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens] 969 0.0
gi|22748695 DEP domain containing 4 [Homo sapiens] 144 1e-34
gi|38488716 DEP domain containing 1 isoform b [Homo sapiens] 129 8e-30
gi|223633999 DEP domain containing 1B isoform 1 [Homo sapiens] 115 9e-26
gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens] 84 2e-16
gi|166295188 DEP domain containing 1 isoform a [Homo sapiens] 73 7e-13
gi|70980531 GGA binding partner [Homo sapiens] 39 0.015
gi|38569484 kinesin family member 21A [Homo sapiens] 36 0.095
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 35 0.12
gi|22749359 phosphatidylinositol-3-phosphate 5-kinase type III i... 35 0.12
gi|189571664 DEP domain containing 6 [Homo sapiens] 33 0.47
gi|5032031 RNA binding motif protein 5 [Homo sapiens] 33 0.47
gi|208609990 nucleoporin 93kDa [Homo sapiens] 33 0.81
gi|223718070 retinoic acid receptor, alpha isoform 4 [Homo sapiens] 31 3.1
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 31 3.1
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 31 3.1
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 31 3.1
gi|115583670 T-cell lymphoma invasion and metastasis 1 [Homo sap... 31 3.1
gi|126116589 fibrocystin L [Homo sapiens] 31 3.1
gi|108773787 retinoblastoma 1 [Homo sapiens] 30 4.0
gi|164519076 transmembrane 9 superfamily protein member 4 [Homo ... 30 5.2
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 30 6.8
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens] 30 6.8
gi|214010216 SMC6 protein [Homo sapiens] 30 6.8
gi|13375848 SMC6 protein [Homo sapiens] 30 6.8
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 29 8.9
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 29 8.9
>gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens]
Length = 511
Score = 1016 bits (2626), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MATVQEKAAALNLSALHSPAHRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLK 60
MATVQEKAAALNLSALHSPAHRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLK
Sbjct: 1 MATVQEKAAALNLSALHSPAHRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLK 60
Query: 61 RHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDK 120
RHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDK
Sbjct: 61 RHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDK 120
Query: 121 KPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSL 180
KPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSL
Sbjct: 121 KPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSL 180
Query: 181 KPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQS 240
KPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQS
Sbjct: 181 KPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQS 240
Query: 241 TMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKE 300
TMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKE
Sbjct: 241 TMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKE 300
Query: 301 LLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRR 360
LLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRR
Sbjct: 301 LLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRR 360
Query: 361 LLYFMAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVF 420
LLYFMAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVF
Sbjct: 361 LLYFMAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVF 420
Query: 421 KIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLD 480
KIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLD
Sbjct: 421 KIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLD 480
Query: 481 EDSKLSAKEKKKLLGQFYKCHPDIFIEHFGD 511
EDSKLSAKEKKKLLGQFYKCHPDIFIEHFGD
Sbjct: 481 EDSKLSAKEKKKLLGQFYKCHPDIFIEHFGD 511
>gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens]
Length = 502
Score = 969 bits (2505), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 25 GFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKY 84
GFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKY
Sbjct: 16 GFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKY 75
Query: 85 FGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQL 144
FGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQL
Sbjct: 76 FGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQL 135
Query: 145 GKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQ 204
GKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQ
Sbjct: 136 GKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQ 195
Query: 205 EETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDE 264
EETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDE
Sbjct: 196 EETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDE 255
Query: 265 WLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVH 324
WLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVH
Sbjct: 256 WLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVH 315
Query: 325 NGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM 384
NGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM
Sbjct: 316 NGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRM 375
Query: 385 VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPN 444
VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPN
Sbjct: 376 VVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPN 435
Query: 445 RDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDI 504
RDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDI
Sbjct: 436 RDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDI 495
Query: 505 FIEHFGD 511
FIEHFGD
Sbjct: 496 FIEHFGD 502
>gi|22748695 DEP domain containing 4 [Homo sapiens]
Length = 294
Score = 144 bits (364), Expect = 1e-34
Identities = 87/233 (37%), Positives = 133/233 (57%), Gaps = 13/233 (5%)
Query: 32 PFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIP 91
PF AT +W II++LQ QVE+K+RRH L+ + DCF GS+AVDV+ SHL+QN DI
Sbjct: 57 PFQATQLWDGIIHSLQAQVEIKRRRHHLQTYKDCFTGSDAVDVVLSHLMQNTCLSSNDIS 116
Query: 92 RAKVVRVCQALMDYKVFEAV-PTKVFGKDKKPTFEDSSCSLYRFTTIPNQDS------QL 144
K V +CQ LM++KVFE V K+F K+K+ FEDS+ SLYRF + N+ S Q
Sbjct: 117 CLKGVHLCQVLMNHKVFEPVGMKKLFKKEKELEFEDSNISLYRF--LGNKSSYDCCKRQK 174
Query: 145 GKENKLYSPARYADALFK---SSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINE 201
EN+ R + + +I +E+L ++ PA P++ + +
Sbjct: 175 DAENEFNETLRPGYEMISNPLAQEIGEERIEELIHTINGNPALCPNITVQKPFLRLSKED 234
Query: 202 VWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGIL 254
VW+E+T+ LLQL+ LP LD++L+ + Q ++ +V ++ LDR ++
Sbjct: 235 VWKEQTLLCLLQLIHLPFLDNILEPPVKTQNL-QLNKEEDLVITNTCLDRELI 286
>gi|38488716 DEP domain containing 1 isoform b [Homo sapiens]
Length = 527
Score = 129 bits (323), Expect = 8e-30
Identities = 116/516 (22%), Positives = 232/516 (44%), Gaps = 56/516 (10%)
Query: 23 PPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQN 82
PPG P+ AT +W+ + + + + ++K R K++ +CF EAVD ++ L N
Sbjct: 7 PPG------PYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNN 60
Query: 83 KYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRF------TT 136
FG ++ R + +++ + + V E + + +G + D + L+RF T
Sbjct: 61 SNFGP-EVTRQQTIQLLRKFLKNHVIEDIKGR-WGSEN----VDDNNQLFRFPATSPLKT 114
Query: 137 IPNQDSQLGKENKLYSPARYADALFKSSDIRSAS--------LEDLWENLSLKPANSPHV 188
+P + +L ++N + + ++ D++FK ++ + ++ E + + N
Sbjct: 115 LPRRYPEL-RKNNIENFSKDKDSIFKLRNLSRRTPKRHGLHLSQENGEKIKHEIINEDQE 173
Query: 189 NI--SATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSS 246
N + LS + + EVW+ + L ++ +P L+ ++ ++ +P Q M N +
Sbjct: 174 NAIDNRELSQEDVEEVWRYVILIYLQTILGVPSLEEVINPKQVIP-------QYIMYNMA 226
Query: 247 NYLDRGILKAYSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDA 305
N RG++ + S + W+ +A+ CL P + P +++
Sbjct: 227 NTSKRGVVILQNKSDDLPHWVLSAMKCLANWP-------RSNDMNNPTYVGFERDVFRTI 279
Query: 306 IGRYYSSREPLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYF 364
+ EPLL ++ I LL +A++A QL LL NR + + L+
Sbjct: 280 ADYFLDLPEPLLTFEYYELFVNILGLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRM 339
Query: 365 MA-VAANPSEFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVF 420
++ ++ N KL R ++ FS+ ++ + +L + LV FLMDH +++
Sbjct: 340 ISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEIL 399
Query: 421 KIPGTLHKIVSVKLMAIQNGRDPNRDAG-------YIYCQRIDQRDYSNNTEKTTKDELL 473
++P L V L ++ G N G Y YC++I +++ T++ +
Sbjct: 400 QVPSYLQTAVEKHLDYLKKGHIENPGDGLFAPLPTYSYCKQISAQEFDEQKVSTSQAAIA 459
Query: 474 NLLKTLDEDSKLSAKEKKKLLGQFYKCHPDIFIEHF 509
LL+ + ++ L KEK+K L QF K +P I+ + F
Sbjct: 460 ELLENIIKNRSLPLKEKRKKLKQFQKEYPLIYQKRF 495
>gi|223633999 DEP domain containing 1B isoform 1 [Homo sapiens]
Length = 529
Score = 115 bits (288), Expect = 9e-26
Identities = 123/507 (24%), Positives = 228/507 (44%), Gaps = 48/507 (9%)
Query: 28 VAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGD 87
V P+ AT +W+ + + ++ ++K R R K + CF +EAVD + L ++ FG
Sbjct: 6 VGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGP 65
Query: 88 VDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTI---------- 137
++ R + V++ + + V E + GK + FED+ LYRF
Sbjct: 66 -EVTRKQTVQLLKKFLKNHVIEDIK----GKWGEEDFEDNR-HLYRFPPSSPLKPYPKKP 119
Query: 138 PNQDSQLG-KENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSP 196
PNQ + E P + + + ++ + ++++ + + L+
Sbjct: 120 PNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTE 179
Query: 197 QVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA 256
+ E+W+ T+ L +++ L L+ +L + K + N + +G++
Sbjct: 180 ANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKF-------IIHNVYSVSKQGVVIL 232
Query: 257 YSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSS-RE 314
S+E W+ +A+ CL P+ S +QP K++ F I YY +E
Sbjct: 233 DDKSKELPHWVLSAMKCLANWPNC-------SDLKQPMYLGFEKDV-FKTIADYYGHLKE 284
Query: 315 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 372
PLL HL D + LL K ++A+EA Q+ LL +NR + + L+ MA + N
Sbjct: 285 PLLTFHLFDAFVSVLGLLQ--KEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
Query: 373 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 429
L R ++ + FS+ I+ D +L + LV FLMD+ +++ K+P L
Sbjct: 343 MPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTS 402
Query: 430 VSVKLMAIQNG--RDPNRDAGYI-----YCQRIDQRDYSNNTEKTTKDELLNLLKTLDED 482
+ ++ ++ + P D +C++I ++ +++ L LL+ + D
Sbjct: 403 IEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITD 462
Query: 483 SKLSAKEKKKLLGQFYKCHPDIFIEHF 509
+KLS KEKKK L QF K +P+++ E F
Sbjct: 463 AKLSNKEKKKKLKQFQKSYPEVYQERF 489
>gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens]
Length = 467
Score = 84.3 bits (207), Expect = 2e-16
Identities = 100/425 (23%), Positives = 187/425 (44%), Gaps = 41/425 (9%)
Query: 28 VAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGD 87
V P+ AT +W+ + + ++ ++K R R K + CF +EAVD + L ++ FG
Sbjct: 6 VGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGP 65
Query: 88 VDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTI---------- 137
++ R + V++ + + V E + GK + FED+ LYRF
Sbjct: 66 -EVTRKQTVQLLKKFLKNHVIEDIK----GKWGEEDFEDNR-HLYRFPPSSPLKPYPKKP 119
Query: 138 PNQDSQLG-KENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSP 196
PNQ + E P + + + ++ + ++++ + + L+
Sbjct: 120 PNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTE 179
Query: 197 QVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA 256
+ E+W+ T+ L +++ L L+ +L + K + N + +G++
Sbjct: 180 ANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKF-------IIHNVYSVSKQGVVIL 232
Query: 257 YSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSS-RE 314
S+E W+ +A+ CL P+ S +QP K++ F I YY +E
Sbjct: 233 DDKSKELPHWVLSAMKCLANWPNC-------SDLKQPMYLGFEKDV-FKTIADYYGHLKE 284
Query: 315 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 372
PLL HL D + LL K ++A+EA Q+ LL +NR + + L+ MA + N
Sbjct: 285 PLLTFHLFDAFVSVLGLLQ--KEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
Query: 373 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 429
L R ++ + FS+ I+ D +L + LV FLMD+ +++ K+P L
Sbjct: 343 MPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTS 402
Query: 430 VSVKL 434
+ ++
Sbjct: 403 IEERV 407
>gi|166295188 DEP domain containing 1 isoform a [Homo sapiens]
Length = 811
Score = 72.8 bits (177), Expect = 7e-13
Identities = 59/272 (21%), Positives = 127/272 (46%), Gaps = 37/272 (13%)
Query: 23 PPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQN 82
PPG P+ AT +W+ + + + + ++K R K++ +CF EAVD ++ L N
Sbjct: 7 PPG------PYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNN 60
Query: 83 KYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRF------TT 136
FG ++ R + +++ + + V E + + +G + D + L+RF T
Sbjct: 61 SNFGP-EVTRQQTIQLLRKFLKNHVIEDIKGR-WGSEN----VDDNNQLFRFPATSPLKT 114
Query: 137 IPNQDSQLGKENKLYSPARYADALFKSSDIRSAS--------LEDLWENLSLKPANSPHV 188
+P + +L ++N + + ++ D++FK ++ + ++ E + + N
Sbjct: 115 LPRRYPEL-RKNNIENFSKDKDSIFKLRNLSRRTPKRHGLHLSQENGEKIKHEIINEDQE 173
Query: 189 NI--SATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSS 246
N + LS + + EVW+ + L ++ +P L+ ++ ++ +P Q M N +
Sbjct: 174 NAIDNRELSQEDVEEVWRYVILIYLQTILGVPSLEEVINPKQVIP-------QYIMYNMA 226
Query: 247 NYLDRGILKAYSDSQE-DEWLSAAIDCLEYLP 277
N RG++ + S + W+ +A+ CL P
Sbjct: 227 NTSKRGVVILQNKSDDLPHWVLSAMKCLANWP 258
Score = 72.4 bits (176), Expect = 9e-13
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 11/200 (5%)
Query: 321 SDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPSEFKLQKE 379
S + G LL +A++A QL LL NR + + L+ ++ ++ N KL
Sbjct: 580 SSMLTGTQSLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQNVDMPKLHDA 639
Query: 380 SDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMA 436
R ++ FS+ ++ + +L + LV FLMDH +++ ++P L V L
Sbjct: 640 MGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTAVEKHLDY 699
Query: 437 IQNGRDPNRDAG-------YIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKE 489
++ G N G Y YC++I +++ T++ + LL+ + ++ L KE
Sbjct: 700 LKKGHIENPGDGLFAPLPTYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKNRSLPLKE 759
Query: 490 KKKLLGQFYKCHPDIFIEHF 509
K+K L QF K +P I+ + F
Sbjct: 760 KRKKLKQFQKEYPLIYQKRF 779
>gi|70980531 GGA binding partner [Homo sapiens]
Length = 441
Score = 38.5 bits (88), Expect = 0.015
Identities = 74/352 (21%), Positives = 139/352 (39%), Gaps = 56/352 (15%)
Query: 185 SPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVP------KIPQPKR 238
S H ++ +L P + + TI + D S ++ Q+ + K+ + ++
Sbjct: 93 STHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEIKLKVSEEEK 152
Query: 239 Q------STMVNSSNYLDRGILKA-----------YSDSQE------DEWLSAAIDCLEY 275
Q +++ N L++G LK Y + QE ++ A + L
Sbjct: 153 QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 212
Query: 276 LPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLN----HLSDVHNGIAELL 331
+ D+ + S +Q + +++ AI + E LLN L ++ + ELL
Sbjct: 213 IVDEYKALLQSSVKQQ---VEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELL 269
Query: 332 VNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRMVVKRIFS 391
E ++ +Q ++L+ EE +R + AA KL+KE+ V+K +
Sbjct: 270 KEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAA-----KLEKEAVKDAVLKVVEE 324
Query: 392 KAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRD---AG 448
+ KNL K + L+ +H KD K+ + K AIQ R +++ A
Sbjct: 325 ----ERKNLEKAHAEERELWKTEHAKDQEKVSQEIQK-------AIQEQRKISQETVKAA 373
Query: 449 YIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKC 500
I Q+ ++ K T+DEL+ +K ++ + L F C
Sbjct: 374 IIEEQKRSEKAV-EEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSC 424
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 35.8 bits (81), Expect = 0.095
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 172 EDLWENLSLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPL--LDSLLKQQEA 229
E+L +NL+ A +P+ + S+T SP +++ +ETI +++DL L+ L ++++
Sbjct: 501 ENLRKNLTRATARAPYFSGSSTFSPTILSS--DKETI----EIIDLAKKDLEKLKRKEKR 554
Query: 230 VPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFP 289
K K +T + ++G+ + ++ E E D + ++ E
Sbjct: 555 KKKSVAGKEDNTDTDQEKKEEKGVSERENNELEVEESQEVSDHEDEEEEEEEEEDDIDGG 614
Query: 290 EQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKL 349
E D +D S + N+ +D+ N E+ + K LE +Q L+
Sbjct: 615 ESSDESD--------------SESDEKANYQADLANITCEIAIKQKLIDELENSQKRLQT 660
Query: 350 LDFQNREEFRRL 361
L Q E+ L
Sbjct: 661 LKKQYEEKLMML 672
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 35.4 bits (80), Expect = 0.12
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 38 VWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVR 97
+W I + + +E + R+ L+ H +C VG E V + LI+N + RA+ +
Sbjct: 358 LWKKICHH-SSGMEFQDHRYWLRTHPNCIVGKELV----NWLIRNGHIA----TRAQAIA 408
Query: 98 VCQALMDYKVFEAVP--TKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPAR 155
+ QA++D + + V ++F +D+ + + + T P+ DS E P+
Sbjct: 409 IGQAMVDGRWLDCVSHHDQLF-RDEYALYRPLQSTEFSETPSPDSDSVNSVEGH-SEPSW 466
Query: 156 YADALFKSSDIRSASLEDLWENLSLKPANSPHVNISA 192
+ D F SD + E+ +NL+ + S ++S+
Sbjct: 467 FKDIKFDDSDTEQIA-EEGDDNLANSASPSKRTSVSS 502
>gi|22749359 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 3 [Homo sapiens]
Length = 451
Score = 35.4 bits (80), Expect = 0.12
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 38 VWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVR 97
+W I + + +E + R+ L+ H +C VG E V + LI+N + RA+ +
Sbjct: 261 LWKKICHH-SSGMEFQDHRYWLRTHPNCIVGKELV----NWLIRNGHIA----TRAQAIA 311
Query: 98 VCQALMDYKVFEAVP--TKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPAR 155
+ QA++D + + V ++F +D+ + + + T P+ DS E P+
Sbjct: 312 IGQAMVDGRWLDCVSHHDQLF-RDEYALYRPLQSTEFSETPSPDSDSVNSVEGH-SEPSW 369
Query: 156 YADALFKSSDIRSASLEDLWENLSLKPANSPHVNISA 192
+ D F SD + E+ +NL+ + S ++S+
Sbjct: 370 FKDIKFDDSDTEQIA-EEGDDNLANSASPSKRTSVSS 405
>gi|189571664 DEP domain containing 6 [Homo sapiens]
Length = 409
Score = 33.5 bits (75), Expect = 0.47
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 46 LQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDY 105
L + +K RRH LK + +CFV E +D LI++K D R +++ Q L D
Sbjct: 44 LHEEKVIKDRRHHLKTYPNCFVAKELID----WLIEHKEASD----RETAIKLMQKLADR 95
Query: 106 KVFEAV 111
+ V
Sbjct: 96 GIIHHV 101
>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
Length = 815
Score = 33.5 bits (75), Expect = 0.47
Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 44/261 (16%)
Query: 145 GKENKLYSPARYADALFKSSDIRSASLEDLWENL--SLKPANSPHVNISATLSPQVINEV 202
GKE K ++ A + K + + SL EN S +P NS + E
Sbjct: 525 GKEKKEKPKSKTAQQIAKDMERWAKSLNKQKENFKNSFQPVNS-------------LREE 571
Query: 203 WQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQE 262
+ E+ +L ++Q+ +P++ + + N L RG++ AYS +
Sbjct: 572 ERRESAAADAGFALFEKKGALAERQQLIPELVRNG------DEENPLKRGLVAAYSGDSD 625
Query: 263 DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNH--L 320
+E E+ + ++ K++ R + +++ L+ H L
Sbjct: 626 NE-----------------EELVERLESEEEKLADWKKMACLLCRRQFPNKDALVRHQQL 668
Query: 321 SDVHNGIAELLVNGK-TEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKE 379
SD+H ++ + +E LEA +L + + +++R RR Y + P E K +K+
Sbjct: 669 SDLHKQNMDIYRRSRLSEQELEALELREREMKYRDRAAERREKYGI---PEPPEPKRKKQ 725
Query: 380 SDNRMVVKRIFSKAIVDNKNL 400
D V +K +D+ N+
Sbjct: 726 FDAGTVNYEQPTKDGIDHSNI 746
>gi|208609990 nucleoporin 93kDa [Homo sapiens]
Length = 819
Score = 32.7 bits (73), Expect = 0.81
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 415 HQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDEL-L 473
+ KD P T +K+ A++N DP + A Y R D D + T+D L L
Sbjct: 357 NSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWL 416
Query: 474 NLLKTLDEDSKLSAKEKKKLLGQFYK 499
L + +D S+ + + L QF K
Sbjct: 417 KLNQVCFDDDGTSSPQDRLTLSQFQK 442
>gi|223718070 retinoic acid receptor, alpha isoform 4 [Homo sapiens]
Length = 365
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 290 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 320
EQPDR D+++E L +A+ Y R P H+
Sbjct: 246 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 276
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 290 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 320
EQPDR D+++E L +A+ Y R P H+
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 373
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 290 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 320
EQPDR D+++E L +A+ Y R P H+
Sbjct: 338 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 368
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 290 EQPDRTDLVKELLFDAIGRYYSSREPLLNHL 320
EQPDR D+++E L +A+ Y R P H+
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHM 373
>gi|115583670 T-cell lymphoma invasion and metastasis 1 [Homo sapiens]
Length = 1591
Score = 30.8 bits (68), Expect = 3.1
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 290 EQPDRTDLVKELLFDAIGR--YYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLL 347
E+ ++ D K++LF G YY+ R L + H + ++LV KT+ A +A
Sbjct: 1113 EKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKA----- 1167
Query: 348 KLLDFQNREE 357
LD QN ++
Sbjct: 1168 -FLDAQNPKQ 1176
>gi|126116589 fibrocystin L [Homo sapiens]
Length = 4243
Score = 30.8 bits (68), Expect = 3.1
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 118 KDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWEN 177
K P E +SCSLY++ I N E ++ PA ++ + +S +L DLW
Sbjct: 531 KVTSPCVEANSCSLYQYRLIYNM------EKTVFLPADASEFILQS------ALNDLW-- 576
Query: 178 LSLKPANSPHVNISATLSPQ 197
S+KP V + T +PQ
Sbjct: 577 -SIKPDT---VQVIRTQNPQ 592
>gi|108773787 retinoblastoma 1 [Homo sapiens]
Length = 928
Score = 30.4 bits (67), Expect = 4.0
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 299 KELLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEF 358
K L D+I + + R P ++L + N I + + Q L+ +L+ + +
Sbjct: 341 KTLQTDSIDSFETQRTPRKSNLDEEVNVIPP---HTPVRTVMNTIQQLMMILNSASDQPS 397
Query: 359 RRLL-YFMAVAANPSEFKLQKESDNRMVVKRIFSKAI 394
L+ YF NP E L++ D + K F+KA+
Sbjct: 398 ENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAV 434
>gi|164519076 transmembrane 9 superfamily protein member 4 [Homo
sapiens]
Length = 642
Score = 30.0 bits (66), Expect = 5.2
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 108 FEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIR 167
FE +P + +D K E SSC+L T Q+ KEN+LY ++ SDI+
Sbjct: 207 FEVIPQSIRLEDLKAD-EKSSCTLPEGTNSSPQEIDPTKENQLYFT---YSVHWEESDIK 262
Query: 168 SASLEDLWENLS 179
AS D + +S
Sbjct: 263 WASRWDTYLTMS 274
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 179 SLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKR 238
+L P ++P + A ++P V ++ Q++ +G+ PLL LLK+ +P P+
Sbjct: 94 TLPPGSAP---LEAPMTP-VTDDSPQKKMLGQKATPPPSPLLSELLKKGSLLPTSPRLVN 149
Query: 239 QSTMVNSSNYLD 250
+S M +S +L+
Sbjct: 150 ESEMAVASGHLN 161
>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
Length = 951
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 179 SLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKR 238
+L P ++P + A ++P V ++ Q++ +G+ PLL LLK+ +P P+
Sbjct: 234 TLPPGSAP---LEAPMTP-VTDDSPQKKMLGQKATPPPSPLLSELLKKGSLLPTSPRLVN 289
Query: 239 QSTMVNSSNYLD 250
+S M +S +L+
Sbjct: 290 ESEMAVASGHLN 301
>gi|214010216 SMC6 protein [Homo sapiens]
Length = 1091
Score = 29.6 bits (65), Expect = 6.8
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 19/213 (8%)
Query: 307 GRYYSSREPLLNHLS-DVHNGIAELL--VNGKTEIALEATQLLLKL-LDFQNREEF--RR 360
GRYYSS LS DV + I++L V KT L Q L L D ++ EE R
Sbjct: 647 GRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNEELLKRC 706
Query: 361 LLYF----MAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFL---- 412
L++ M + N SE + E +N + + + D +K K ++ +
Sbjct: 707 QLHYKELKMKIRKNISEIR---ELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQK 763
Query: 413 --MDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKD 470
M+H K + + + K+ + DP +D + +D + + +
Sbjct: 764 ENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQK 823
Query: 471 ELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPD 503
E L+ L + + KE ++ + Q + P+
Sbjct: 824 EHLDTLNKKKRELDMKEKELEEKMSQARQICPE 856
>gi|13375848 SMC6 protein [Homo sapiens]
Length = 1091
Score = 29.6 bits (65), Expect = 6.8
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 19/213 (8%)
Query: 307 GRYYSSREPLLNHLS-DVHNGIAELL--VNGKTEIALEATQLLLKL-LDFQNREEF--RR 360
GRYYSS LS DV + I++L V KT L Q L L D ++ EE R
Sbjct: 647 GRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNEELLKRC 706
Query: 361 LLYF----MAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFL---- 412
L++ M + N SE + E +N + + + D +K K ++ +
Sbjct: 707 QLHYKELKMKIRKNISEIR---ELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQK 763
Query: 413 --MDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKD 470
M+H K + + + K+ + DP +D + +D + + +
Sbjct: 764 ENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQK 823
Query: 471 ELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPD 503
E L+ L + + KE ++ + Q + P+
Sbjct: 824 EHLDTLNKKKRELDMKEKELEEKMSQARQICPE 856
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 29.3 bits (64), Expect = 8.9
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 43/177 (24%)
Query: 269 AIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLL-NHLSDVHNGI 327
AIDC+ Y D D++K+ D EPL+ N LS+ I
Sbjct: 1132 AIDCVNYEGQSAY-----------DVADMLKQYFRDL-------PEPLMTNKLSETFLQI 1173
Query: 328 AELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYF-----------------MAVAAN 370
+ + + L+A + + LL +NRE + LLYF +AV
Sbjct: 1174 YQYVPKDQR---LQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 1230
Query: 371 PSEF---KLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVL-FLMDHQKDVFKIP 423
PS F L++E+ + V++R S D K+L++ L ++ K +F++P
Sbjct: 1231 PSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKLFQVP 1287
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 29.3 bits (64), Expect = 8.9
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 43/177 (24%)
Query: 269 AIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLL-NHLSDVHNGI 327
AIDC+ Y D D++K+ D EPL+ N LS+ I
Sbjct: 695 AIDCVNYEGQSAY-----------DVADMLKQYFRDL-------PEPLMTNKLSETFLQI 736
Query: 328 AELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYF-----------------MAVAAN 370
+ + + L+A + + LL +NRE + LLYF +AV
Sbjct: 737 YQYVPKDQR---LQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 793
Query: 371 PSEF---KLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVL-FLMDHQKDVFKIP 423
PS F L++E+ + V++R S D K+L++ L ++ K +F++P
Sbjct: 794 PSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKLFQVP 850
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,604,791
Number of Sequences: 37866
Number of extensions: 795591
Number of successful extensions: 2228
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2202
Number of HSP's gapped (non-prelim): 34
length of query: 511
length of database: 18,247,518
effective HSP length: 107
effective length of query: 404
effective length of database: 14,195,856
effective search space: 5735125824
effective search space used: 5735125824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.