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Search of human proteins with 239741729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1 ... 531 e-151
gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo ... 394 e-110
gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1 ... 353 1e-97
gi|133922562 phosphoglucomutase 5 [Homo sapiens] 219 2e-57
gi|21361621 phosphoglucomutase 1 [Homo sapiens] 147 9e-36
gi|32698752 hypothetical protein LOC63939 [Homo sapiens] 34 0.15
gi|222418604 hypothetical protein LOC257407 [Homo sapiens] 33 0.32
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 31 1.2
gi|50363230 RAB11 family interacting protein 1 isoform 2 [Homo s... 31 1.2
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 30 1.6
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 30 1.6
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens] 30 1.6
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens] 30 1.6
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 30 2.1
gi|239754359 PREDICTED: similar to heat shock 70kD protein bindi... 30 2.7
gi|239748906 PREDICTED: hypothetical protein XP_002346852 [Homo ... 30 2.7
gi|239742930 PREDICTED: hypothetical protein XP_002342689 [Homo ... 30 2.7
gi|108773804 Fraser syndrome 1 [Homo sapiens] 30 2.7
gi|157388906 Lck interacting transmembrane adaptor 1 [Homo sapiens] 29 4.7
gi|31377548 phosphoglucomutase 2-like 1 [Homo sapiens] 29 4.7
gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens] 29 4.7
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13... 28 6.1
gi|169214011 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 28 6.1
gi|29825823 hypothetical protein LOC283987 [Homo sapiens] 28 6.1
>gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 259
Score = 531 bits (1368), Expect = e-151
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MLKTSQIGCGLLTAASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEV 60
MLKTSQIGCGLLTAASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEV
Sbjct: 1 MLKTSQIGCGLLTAASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEV 60
Query: 61 DNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQG 120
DNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQG
Sbjct: 61 DNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQG 120
Query: 121 QRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANGIGRLIIGQN 180
QRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANGIGRLIIGQN
Sbjct: 121 QRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANGIGRLIIGQN 180
Query: 181 GILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGVLNGNISKTPVHSKG 240
GILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGVLNGNISKTPVHSKG
Sbjct: 181 GILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGVLNGNISKTPVHSKG 240
Query: 241 FCLGPPDTQRATMRSTPEE 259
FCLGPPDTQRATMRSTPEE
Sbjct: 241 FCLGPPDTQRATMRSTPEE 259
>gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo
sapiens]
Length = 386
Score = 394 bits (1011), Expect = e-110
Identities = 198/228 (86%), Positives = 204/228 (89%), Gaps = 9/228 (3%)
Query: 15 ASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEVDNIWGRRSSRIFQD 74
+SKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKP ASQPYSQEVDNIWGRRSSRIFQD
Sbjct: 121 SSKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPAASQPYSQEVDNIWGRRSSRIFQD 180
Query: 75 SSLDSLRPR---------EPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQGQRSYP 125
SSL RP EPQQDRPGGAAEGS IPVRTVPTAP E RRPTGLFQGQRSYP
Sbjct: 181 SSLGWRRPPAGCGFPPAPEPQQDRPGGAAEGSPIPVRTVPTAPREHRRPTGLFQGQRSYP 240
Query: 126 PNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANGIGRLIIGQNGILST 185
PNFIRSALSSV LRDRQGRTTG GSDGR+FGRTAVEV GPMAAANGIGRLIIGQNG+LST
Sbjct: 241 PNFIRSALSSVGLRDRQGRTTGAGSDGRFFGRTAVEVVGPMAAANGIGRLIIGQNGVLST 300
Query: 186 PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGVLNGNISK 233
PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANG + ++ K
Sbjct: 301 PAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANGEIFLHVMK 348
>gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 237
Score = 353 bits (905), Expect = 1e-97
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MLKTSQIGCGLLTAASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEV 60
MLKTSQIGCGLLTAASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEV
Sbjct: 1 MLKTSQIGCGLLTAASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTLYKPVASQPYSQEV 60
Query: 61 DNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQG 120
DNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQG
Sbjct: 61 DNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRPTGLFQG 120
Query: 121 QRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANG 171
QRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANG
Sbjct: 121 QRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANG 171
>gi|133922562 phosphoglucomutase 5 [Homo sapiens]
Length = 567
Score = 219 bits (557), Expect = 2e-57
Identities = 113/140 (80%), Positives = 119/140 (85%), Gaps = 9/140 (6%)
Query: 95 EGSRIPVRTVPTAPCED---------RRPTGLFQGQRSYPPNFIRSALSSVDLRDRQGRT 145
EGS IPV TVPTAP ED RRPTGLF+GQR+Y PNFI+S LSS+DLRDRQG T
Sbjct: 2 EGSPIPVLTVPTAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCT 61
Query: 146 TGVGSDGRYFGRTAVEVGGPMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTA 205
VGSDGRYF RTA+E+ MAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTA
Sbjct: 62 MVVGSDGRYFSRTAIEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTA 121
Query: 206 SHCPGGPGGEFGVKFNVANG 225
SHCPGGPGGEFGVKFNVANG
Sbjct: 122 SHCPGGPGGEFGVKFNVANG 141
>gi|21361621 phosphoglucomutase 1 [Homo sapiens]
Length = 562
Score = 147 bits (371), Expect = 9e-36
Identities = 76/135 (56%), Positives = 99/135 (73%), Gaps = 8/135 (5%)
Query: 99 IPVRTVPTAPCEDRRP--TGL------FQGQRSYPPNFIRSALSSVDLRDRQGRTTGVGS 150
+ + TV T +D++P +GL FQ +Y NFI+S +S+V+ RQ T VG
Sbjct: 2 VKIVTVKTQAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVGG 61
Query: 151 DGRYFGRTAVEVGGPMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPG 210
DGR++ + A+++ +AAANGIGRL+IGQNGILSTPAVSCIIRKIKA GGIILTASH PG
Sbjct: 62 DGRFYMKEAIQLIARIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPG 121
Query: 211 GPGGEFGVKFNVANG 225
GP G+FG+KFN++NG
Sbjct: 122 GPNGDFGIKFNISNG 136
>gi|32698752 hypothetical protein LOC63939 [Homo sapiens]
Length = 383
Score = 33.9 bits (76), Expect = 0.15
Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 42/206 (20%)
Query: 65 GRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAP------CEDRRPT--G 116
G +++F D + +D ++ RIP+ P P E+ P
Sbjct: 69 GASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFD 128
Query: 117 LFQGQ-----RSYPPNFIRSALSSVDLRD------RQGRTTGVGSDGRYFGRTAVEVGGP 165
L GQ Y PNF+ S SS DLRD + +T V G G+
Sbjct: 129 LHPGQGHTKPEYYYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGKY------- 181
Query: 166 MAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANG 225
I RLI Q L V C KA GG + P PG +K +
Sbjct: 182 ------IDRLI--QLEWLQVQTVQC----EKAKGG----KARPPTAPGTSGALKSPGRSK 225
Query: 226 VLNGNISKTPVHSKGFCLGPPDTQRA 251
++ +SK H +G P ++A
Sbjct: 226 LIASALSKPLPHQEGASKSGPSRKKA 251
>gi|222418604 hypothetical protein LOC257407 [Homo sapiens]
Length = 295
Score = 32.7 bits (73), Expect = 0.32
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 13/167 (7%)
Query: 60 VDNIWGRRSSRIFQDSSLDSLRPREPQQDRPGGAA-----EGSRIPVRTVPTAPCEDRRP 114
V +W R SR ++ P EP +PGGAA G+ + A
Sbjct: 36 VGELWEREQSRALLRDFARAVFPPEPGAAKPGGAAAEGAGPGAARGAQRAARAAGAAGAA 95
Query: 115 TGLFQGQRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGRYFGRTAVEVGGPMAAANGIGR 174
+ RS P F+ SS+ R+ + R + D R R + G + A G
Sbjct: 96 AAAARAIRS-PLVFVLCRASSLAAREPRRRLREMLRDVRGRRRAGAALVGVLVAEAGPED 154
Query: 175 LIIGQNGILSTPAVSCIIRKI--KAAGGIILTASHCPGGPGGEFGVK 219
+ +L ++R + + AGG + A++CPG P V+
Sbjct: 155 AVAPGLRLL-----EALLRAVFGRQAGGPVQAAAYCPGLPASCLAVQ 196
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 30.8 bits (68), Expect = 1.2
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 43 CDQTLYKPVASQPYSQEVDNIWGRRSSRIFQDSSLDSLRPREP--QQDRPGGAAEGSRIP 100
CD L P AS E +G + + SSLD P ++++P G S P
Sbjct: 1028 CDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGSPSPPP 1087
Query: 101 VRTVPTAPCEDRRPTGLFQGQRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGR 153
++ P P+ +F S+P + S + Q + T GS GR
Sbjct: 1088 GTSLDN-PVPSPSPSEIFPVTHSFPSS-AHSDTHHTSTAESQKKATAEGSAGR 1138
>gi|50363230 RAB11 family interacting protein 1 isoform 2 [Homo
sapiens]
Length = 612
Score = 30.8 bits (68), Expect = 1.2
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 43 CDQTLYKPVASQPYSQEVDNIWGRRSSRIFQDSSLDSLRPREP--QQDRPGGAAEGSRIP 100
CD L P AS E +G + + SSLD P ++++P G S P
Sbjct: 357 CDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGSPSPPP 416
Query: 101 VRTVPTAPCEDRRPTGLFQGQRSYPPNFIRSALSSVDLRDRQGRTTGVGSDGR 153
++ P P+ +F S+P + S + Q + T GS GR
Sbjct: 417 GTSLDN-PVPSPSPSEIFPVTHSFPSS-AHSDTHHTSTAESQKKATAEGSAGR 467
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 50 PVASQPYSQEVDNIWGRRSSRIFQ-----DSSLDSLRPREPQQDRPGGAAEGSRIPVRT 103
P A +P S+E WG R + I + D+ D L P PQQ R P RT
Sbjct: 13 PKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEADPLEPPPPQQQLGLSLRRSGRQPKRT 71
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 50 PVASQPYSQEVDNIWGRRSSRIFQ-----DSSLDSLRPREPQQDRPGGAAEGSRIPVRT 103
P A +P S+E WG R + I + D+ D L P PQQ R P RT
Sbjct: 13 PKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEADPLEPPPPQQQLGLSLRRSGRQPKRT 71
>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 50 PVASQPYSQEVDNIWGRRSSRIFQ-----DSSLDSLRPREPQQDRPGGAAEGSRIPVRT 103
P A +P S+E WG R + I + D+ D L P PQQ R P RT
Sbjct: 13 PKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEADPLEPPPPQQQLGLSLRRSGRQPKRT 71
>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 50 PVASQPYSQEVDNIWGRRSSRIFQ-----DSSLDSLRPREPQQDRPGGAAEGSRIPVRT 103
P A +P S+E WG R + I + D+ D L P PQQ R P RT
Sbjct: 13 PKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEADPLEPPPPQQQLGLSLRRSGRQPKRT 71
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 30.0 bits (66), Expect = 2.1
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 39 QLSYCDQTLYKPVASQPYSQEVDNIWGRRSSRIFQDSSLDSLRPREPQQ---DRPGGAAE 95
Q S TL P A QE+ + G S S L P EP++ RP G AE
Sbjct: 2766 QSSQQQPTLPTPPALGEVPQELQSPAGEGGS------STQLLMPVEPEELGPTRPSGEAE 2819
Query: 96 GSRIPVRTVPTAP------CEDRRPTGLFQGQRSYPPNFIRSALSSVDLRDRQGRTTGVG 149
+++ + PT ED Q P S+L+S L + G T+ G
Sbjct: 2820 TTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSP-MDTSSLASCTLEEAVGDTSAAG 2878
Query: 150 SDGRYFGRTAVEVGGPMAAANGIGR 174
S + ++ P A A GR
Sbjct: 2879 SSEQPRAGSSTPGDAPPAVAEVQGR 2903
>gi|239754359 PREDICTED: similar to heat shock 70kD protein binding
protein [Homo sapiens]
Length = 204
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 74 DSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRP---------TGLFQGQRS 123
D +D EP D P +G + P TV TAP R TG+F G+RS
Sbjct: 80 DLEIDKEGVIEPDTDAPQEMGDGRKAPDSTVQTAPRSLPRSAQQPRFSQNTGIFSGRRS 138
>gi|239748906 PREDICTED: hypothetical protein XP_002346852 [Homo
sapiens]
Length = 204
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 74 DSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRP---------TGLFQGQRS 123
D +D EP D P +G + P TV TAP R TG+F G+RS
Sbjct: 80 DLEIDKEGVIEPDTDAPQEMGDGRKAPDSTVQTAPRSLPRSAQQPRFSQNTGIFSGRRS 138
>gi|239742930 PREDICTED: hypothetical protein XP_002342689 [Homo
sapiens]
Length = 204
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 74 DSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAPCEDRRP---------TGLFQGQRS 123
D +D EP D P +G + P TV TAP R TG+F G+RS
Sbjct: 80 DLEIDKEGVIEPDTDAPQEMGDGRKAPDSTVQTAPRSLPRSAQQPRFSQNTGIFSGRRS 138
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 29.6 bits (65), Expect = 2.7
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 171 GIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTA----SHCPGGPGGEFGVKFNVANGV 226
G GRL + ++G L ++ IR A I SH G PGG F KF+V +G
Sbjct: 2122 GAGRLQMMKHGNLEQISIKGPIRSFTQAD--ISQGQPEYSHGTGEPGGSFAFKFDVVDGE 2179
Query: 227 LNGNISKT 234
N I K+
Sbjct: 2180 GNRLIDKS 2187
>gi|157388906 Lck interacting transmembrane adaptor 1 [Homo sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 4.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 65 GRRSSRIFQDSSLDSLRPR--EPQQDRPGGAAEGSRIPVRTVPTA 107
G RSSR + +S+D LRP E +D G A S P + +P A
Sbjct: 84 GPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAFPHQELPRA 128
>gi|31377548 phosphoglucomutase 2-like 1 [Homo sapiens]
Length = 622
Score = 28.9 bits (63), Expect = 4.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 185 TPAVSCIIRKIKAAGGIILTASH 207
TP V ++K+KA G+++TASH
Sbjct: 154 TPFVPYAVQKLKAVAGVMITASH 176
>gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]
Length = 1090
Score = 28.9 bits (63), Expect = 4.7
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 15 ASKGKTDAKPFINCKTVYNVCYYSQLSYCDQTL----YKPVASQPYSQEVDNIWGRR--- 67
A KG P +TV + YS Y Q Y+P A ++ V ++G+
Sbjct: 558 ADKGSRPQSPRKGPQTVNSSSIYSM--YLQQATPPKNYQPAAHSALNKSVKAVYGKPVLP 615
Query: 68 ------SSRIFQDSSLDSLRP----------REPQQDRPGGAAEGSRIPVRTVPTAP 108
S F SL + P +EP+QD P A+GS + P +P
Sbjct: 616 SGSTSPSPLPFLHGSLSTGTPQPQPPSESTEKEPEQDGPAAPADGSTVESLPRPLSP 672
>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
[Homo sapiens]
Length = 5058
Score = 28.5 bits (62), Expect = 6.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 202 ILTASHCPGGPGGEFGVKFNVANGVLNGNISKTPVHSK 239
+L S P G FG+K G NGNISK P +K
Sbjct: 4357 LLAPSEKPRLGGWSFGLKIPSEAGGANGNISKPPTLAK 4394
>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.5 bits (62), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 81 RPREPQQDRPGGAAEGSRIPVRTVPTAP 108
R +P++ R GG G R P T+P+ P
Sbjct: 128 RAEQPERGRAGGPGAGPRTPPMTLPSPP 155
>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.5 bits (62), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 81 RPREPQQDRPGGAAEGSRIPVRTVPTAP 108
R +P++ R GG G R P T+P+ P
Sbjct: 128 RAEQPERGRAGGPGAGPRTPPMTLPSPP 155
>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.5 bits (62), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 81 RPREPQQDRPGGAAEGSRIPVRTVPTAP 108
R +P++ R GG G R P T+P+ P
Sbjct: 128 RAEQPERGRAGGPGAGPRTPPMTLPSPP 155
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 28.5 bits (62), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 231 ISKTPVHSKGFCLGPPDTQRATMR 254
++K PV SK C GPP+ Q A R
Sbjct: 392 LAKRPVASKALCEGPPEPQAAGCR 415
>gi|29825823 hypothetical protein LOC283987 [Homo sapiens]
Length = 788
Score = 28.5 bits (62), Expect = 6.1
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 69 SRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPT-APCEDRRP-TGLFQGQRSYPP 126
S++ +D +L SL P EPQQ G+ P + P+ A E RRP T GQ S P
Sbjct: 630 SQVSEDGTLRSLEP-EPQQSLEDGS------PAKGEPSQAWREQRRPSTSSASGQWSPTP 682
Query: 127 NFIRSALSSVDLR 139
++ S S + L+
Sbjct: 683 EWVLSWKSKLPLQ 695
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,304,185
Number of Sequences: 37866
Number of extensions: 562879
Number of successful extensions: 1380
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 29
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.