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Search of human proteins with 239741351
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 630 0.0
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 630 0.0
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 630 0.0
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 46 4e-05
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 41 0.002
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 40 0.003
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 40 0.003
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 40 0.003
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 39 0.004
gi|239756611 PREDICTED: hypothetical protein [Homo sapiens] 39 0.008
gi|239753619 PREDICTED: hypothetical protein [Homo sapiens] 39 0.008
gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo ... 39 0.008
gi|239748204 PREDICTED: hypothetical protein XP_002346595 [Homo ... 39 0.008
gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo ... 39 0.008
gi|239742102 PREDICTED: hypothetical protein XP_002342436 [Homo ... 39 0.008
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 39 0.008
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 39 0.008
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 38 0.010
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 38 0.010
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 38 0.010
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 38 0.010
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 38 0.010
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 38 0.010
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 38 0.013
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 37 0.017
gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo sap... 37 0.022
gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo sap... 37 0.022
gi|169214343 PREDICTED: hypothetical protein [Homo sapiens] 37 0.022
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 630 bits (1624), Expect = 0.0
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP 60
MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP
Sbjct: 1 MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP 60
Query: 61 LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA 120
LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA
Sbjct: 61 LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA 120
Query: 121 SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG 180
SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG
Sbjct: 121 SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG 180
Query: 181 STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR 240
STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR
Sbjct: 181 STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR 240
Query: 241 QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR
Sbjct: 241 QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
Query: 301 VSCWATAAWE 310
VSCWATAAWE
Sbjct: 301 VSCWATAAWE 310
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 630 bits (1624), Expect = 0.0
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP 60
MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP
Sbjct: 1 MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP 60
Query: 61 LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA 120
LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA
Sbjct: 61 LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA 120
Query: 121 SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG 180
SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG
Sbjct: 121 SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG 180
Query: 181 STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR 240
STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR
Sbjct: 181 STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR 240
Query: 241 QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR
Sbjct: 241 QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
Query: 301 VSCWATAAWE 310
VSCWATAAWE
Sbjct: 301 VSCWATAAWE 310
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 630 bits (1624), Expect = 0.0
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP 60
MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP
Sbjct: 1 MNHWHLWCSFRMSQGVLWPNSPSFLNGPRYPRIPRAGKDNLQFFQMFPHHWQIGVPKVSP 60
Query: 61 LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA 120
LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA
Sbjct: 61 LSNVLQWGTGQGGGAPLALGGYSLPVAALRLLRDVLHSGKGLTSWTVGRRQTAATFLLAA 120
Query: 121 SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG 180
SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG
Sbjct: 121 SVRVTAVLQPLFGAPQFLPLSVLKVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRG 180
Query: 181 STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR 240
STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR
Sbjct: 181 STGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRR 240
Query: 241 QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR
Sbjct: 241 QRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
Query: 301 VSCWATAAWE 310
VSCWATAAWE
Sbjct: 301 VSCWATAAWE 310
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 46.2 bits (108), Expect = 4e-05
Identities = 35/103 (33%), Positives = 50/103 (48%)
Query: 180 GSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSR 239
G+ G AS+ + S ++S +SS+S SSS+ + S S S +S +S + SS S
Sbjct: 2596 GTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2655
Query: 240 RQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELA 282
SSS SS+ S + S AAPA A PS + A
Sbjct: 2656 SSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAA 2698
Score = 35.4 bits (80), Expect = 0.065
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 186 AQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSS 245
+ +S+ SGS + + R CS + SRA+ PAS + SS S SS
Sbjct: 2570 SSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAAS-PASSSSSSSSSSSSSSS 2628
Query: 246 SCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFS 287
S SS+ S++SS + S ++ ++ + +S S + S S
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Score = 29.6 bits (65), Expect = 3.6
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 206 ASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSG 265
A + SSS+ + S S S +S S + C + CS ASS A
Sbjct: 2554 AEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPA 2613
Query: 266 ATGAAPALPASPSRELARHSFSRRSGPSGNRAS 298
++ ++ + +S S + S S S S + +S
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 144 KVSMDRASPFTTAGHLTCGGLKLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAAS- 202
+ S +ASP + T G +ASPAG R S G RA A A P AS
Sbjct: 33 RASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPG-RASPAQASPAQASPARASP 91
Query: 203 ---CLRASSASRSSSARACSLSRS-------RASRLPA-----SVARSSPSRRQRRSSSC 247
L SS+ RSSSAR+ S++ S RA+ + A S ARS+P+ R R S
Sbjct: 92 ALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRSSPARSAPATRATRESPG 151
Query: 248 SS 249
+S
Sbjct: 152 TS 153
Score = 33.9 bits (76), Expect = 0.19
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 169 RASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRL 228
+ASPAG R S +A A A P AS +AS A + RA S RAS
Sbjct: 23 QASPAGTPPGRASPA-QASPAQASPAGTPPGRASPAQASPAG-TPPGRA---SPGRASPA 77
Query: 229 PASVARSSPSRRQRRSSSCS-SACCRCSNASSVACFSGAT----------GAAPALPASP 277
AS A++SP+R +S S S+ R S+A S + + T GA P + +SP
Sbjct: 78 QASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVP-IRSSP 136
Query: 278 SRELARHSFSRRS 290
+R +R S
Sbjct: 137 ARSAPATRATRES 149
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 40.4 bits (93), Expect = 0.002
Identities = 51/152 (33%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 163 GLKLKYRA-SPAGR--LRRRGSTGLRAQGAS----AGSGSVWPRAASCLRASSA----SR 211
GL L+ R+ SPAG+ LR G+R +G S W A + R +A R
Sbjct: 375 GLGLRSRSESPAGQCVLRASQQRGVRLEGGGRQQLVPSQVAWRAARAPGRHQAAVLRRRR 434
Query: 212 SSSARACSLSRSRASR-------LPASVARSSPSRRQRRSSSCSSACCRCSN--ASSVAC 262
+ ARA L+R R L A + PSRR R S+ SA RC S VA
Sbjct: 435 ARVARAQQLARLRVGHAVQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAA 494
Query: 263 FSGA--TGAAPALPASPSRELARHSFSRRSGP 292
A GA P AS + + + S RR GP
Sbjct: 495 REAARLRGARPGPAASAATRMWQGSGRRRPGP 526
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 40.4 bits (93), Expect = 0.002
Identities = 51/152 (33%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 163 GLKLKYRA-SPAGR--LRRRGSTGLRAQGAS----AGSGSVWPRAASCLRASSA----SR 211
GL L+ R+ SPAG+ LR G+R +G S W A + R +A R
Sbjct: 375 GLGLRSRSESPAGQCVLRASQQRGVRLEGGGRQQLVPSQVAWRAARAPGRHQAAVLRRRR 434
Query: 212 SSSARACSLSRSRASR-------LPASVARSSPSRRQRRSSSCSSACCRCSN--ASSVAC 262
+ ARA L+R R L A + PSRR R S+ SA RC S VA
Sbjct: 435 ARVARAQQLARLRVGHAVQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPARSPVAA 494
Query: 263 FSGA--TGAAPALPASPSRELARHSFSRRSGP 292
A GA P AS + + + S RR GP
Sbjct: 495 REAARLRGARPGPAASAATRMWQGSGRRRPGP 526
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 40.0 bits (92), Expect = 0.003
Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 167 KYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRAS 226
+Y P RRG R G G S PR R+ S SRS S SRS++
Sbjct: 91 RYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR 150
Query: 227 RLPASVARS-SPSRRQRRSSSCSSACCRCSNAS 258
S +RS S SR RRS S SS+ R + S
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRS 183
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 210 SRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGA 269
SRS R S SRSR+ S +R S S+ + R+ S S + + +A S +
Sbjct: 119 SRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSR 178
Query: 270 APALPASPSRELARHSFSRRSGPSGNRA 297
+ + S SR + S+R S +R+
Sbjct: 179 SRSRSRSRSRSRSPPPVSKRESKSRSRS 206
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 179 RGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPS 238
+G G ++ S+GS R S AS SSS+ + S SRSR+ L S P
Sbjct: 1420 QGRRGRNSRSVSSGSN----------RTSEASSSSSSSS-SSSRSRSRSL------SPPH 1462
Query: 239 RRQRRSS-SCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRA 297
+R RRSS S S RCS++SS S ++ ++ + +S SR +R RR R
Sbjct: 1463 KRWRRSSCSSSGRSRRCSSSSS----SSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRY 1518
Query: 298 S 298
S
Sbjct: 1519 S 1519
Score = 30.0 bits (66), Expect = 2.7
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 199 RAASCLRASSASRSSSARACSLSRSRA-SRLPASVARSSPSRRQRRSS 245
R+ C +SS+S SSS+ + S S SR+ SR P+ RS RR+R SS
Sbjct: 1475 RSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRS--DRRRRYSS 1520
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 39.7 bits (91), Expect = 0.003
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 169 RASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSR--SRAS 226
RASP G R TG ++ + GS S A+ S+AS + S SL+R SRAS
Sbjct: 445 RASPTGTPSRASPTGTQSTASPTGSPST---ASPTGSPSTASPTGSPSRASLTRTPSRAS 501
Query: 227 RLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSF 286
S R S + + + + + S A G+ A AL +PSR +
Sbjct: 502 LTKMESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRA-ALTRTPSRASLTRTP 560
Query: 287 SRRSGPSGNRASI 299
SR S + +RAS+
Sbjct: 561 SRASLTTPSRASL 573
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 39.3 bits (90), Expect = 0.004
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 197 WPRA------ASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSS--SCS 248
WPRA A + S A + SAR L R S + AR++P+ +S + +
Sbjct: 151 WPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCASPSAAA 210
Query: 249 SACCR----CSN---ASSVACFSGATGAAPALPASP 277
S+CCR CS+ A S AC +G T A A P P
Sbjct: 211 SSCCRRRRACSSPTTAWSGACGAGPTAATAAQPGKP 246
>gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225
+ P+G++ RR S+ R G GS+W A SAS SSSA C
Sbjct: 42 SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
Query: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285
R S P++R+RR + S RCS+ +C A P SP+ +
Sbjct: 95 -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
Query: 286 FSRRSGPSGNR 296
S GPS R
Sbjct: 153 GS--GGPSTRR 161
>gi|239753619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 180 GSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSR 239
G + AS+ +G V A + S+ SS A A S + A VA S +
Sbjct: 14 GGWAVALAAASSAAGVVAAAAVTAAGTSACLGSSLAGASSALEDGELSVEALVALSVSAE 73
Query: 240 RQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSR-------RSGP 292
S + CS A+S + F + G +PALP S E + S S P
Sbjct: 74 PAFSSEDAGAWGAACSVAASPSPFFSSEGVSPALPGSSGLEPVAGAASAVVVPSPFFSTP 133
Query: 293 SGNRASIRVSCWATAAW 309
S AS + A+AAW
Sbjct: 134 SATGASSFLLASASAAW 150
>gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo
sapiens]
Length = 166
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225
+ P+G++ RR S+ R G GS+W A SAS SSSA C
Sbjct: 42 SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
Query: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285
R S P++R+RR + S RCS+ +C A P SP+ +
Sbjct: 95 -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
Query: 286 FSRRSGPSGNR 296
S GPS R
Sbjct: 153 GS--GGPSTRR 161
>gi|239748204 PREDICTED: hypothetical protein XP_002346595 [Homo
sapiens]
Length = 170
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 180 GSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSR 239
G + AS+ +G V A + S+ SS A A S + A VA S +
Sbjct: 14 GGWAVALAAASSAAGVVAAAAVTAAGTSACLGSSLAGASSALEDGELSVEALVALSVSAE 73
Query: 240 RQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSR-------RSGP 292
S + CS A+S + F + G +PALP S E + S S P
Sbjct: 74 PAFSSEDAGAWGAACSVAASPSPFFSSEGVSPALPGSSGLEPVAGAASAVVVPSPFFSTP 133
Query: 293 SGNRASIRVSCWATAAW 309
S AS + A+AAW
Sbjct: 134 SATGASSFLLASASAAW 150
>gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo
sapiens]
Length = 166
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 170 ASPAGRLRRRGSTGLRA--QGASAGSGSVWPRAA--SCLRASSASRSSSARACSLSRSRA 225
+ P+G++ RR S+ R G GS+W A SAS SSSA C
Sbjct: 42 SQPSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTC------- 94
Query: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHS 285
R S P++R+RR + S RCS+ +C A P SP+ +
Sbjct: 95 -RGTPSCGALRPTQRRRRITWTSRCVSRCSSGPP-SCARSTGAATPRSTGSPTWHTCENG 152
Query: 286 FSRRSGPSGNR 296
S GPS R
Sbjct: 153 GS--GGPSTRR 161
>gi|239742102 PREDICTED: hypothetical protein XP_002342436 [Homo
sapiens]
Length = 170
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 180 GSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSR 239
G + AS+ +G V A + S+ SS A A S + A VA S +
Sbjct: 14 GGWAVALAAASSAAGVVAAAAVTAAGTSACLGSSLAGASSALEDGELSVEALVALSVSAE 73
Query: 240 RQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSR-------RSGP 292
S + CS A+S + F + G +PALP S E + S S P
Sbjct: 74 PAFSSEDAGAWGAACSVAASPSPFFSSEGVSPALPGSSGLEPVAGAASAVVVPSPFFSTP 133
Query: 293 SGNRASIRVSCWATAAW 309
S AS + A+AAW
Sbjct: 134 SATGASSFLLASASAAW 150
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 169 RASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRL 228
R+S R R RGS + + GS S PR S +SS+ + R+ S S S R
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSS--PRKRSYSSSSSSPERNRKRSRSRSSSSGDRK 299
Query: 229 PASVARSSPSRRQRRSSSCSSACCRCSN 256
SP RR R SS S + R S+
Sbjct: 300 KRRTRSRSPERRHRSSSGSSHSGSRSSS 327
Score = 38.1 bits (87), Expect = 0.010
Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 167 KYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRS---SSARACSLSRS 223
K +++ R + R S R+ S+ S R+ S R+SS+S+S SS+R S SR
Sbjct: 195 KKKSNRRSRSKSRSSHS-RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG 253
Query: 224 RASRLPASVAR--SSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSREL 281
SR + R SSP +R SSS S R + S + SG SP R
Sbjct: 254 SKSRSSSRSHRGSSSPRKRSYSSSSSSPERNR-KRSRSRSSSSGDRKKRRTRSRSPER-- 310
Query: 282 ARHSFSRRSGPSGNRAS 298
RH S S SG+R+S
Sbjct: 311 -RHRSSSGSSHSGSRSS 326
Score = 36.6 bits (83), Expect = 0.029
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 199 RAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNAS 258
R++ +S +S SS+R+ S SRSR+S S +RSS R R S S + R S
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266
Query: 259 SVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIR 300
S S + + +SP R R RS SG+R R
Sbjct: 267 S----SPRKRSYSSSSSSPERN--RKRSRSRSSSSGDRKKRR 302
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 221 SRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRE 280
++ +++R S +RSS SR RSSS SS+ R + S S ++ + + +S R
Sbjct: 194 NKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSR----SSSSSQSRSRSSSRERS 249
Query: 281 LARHSFSRRSGPSGNRAS 298
+R S SR S S +S
Sbjct: 250 RSRGSKSRSSSRSHRGSS 267
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 38.5 bits (88), Expect = 0.008
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 165 KLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSR 224
K++ R R G + R++ S G S + S + S SRS S R+CS S SR
Sbjct: 720 KMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRS-RSCSRSYSR 778
Query: 225 ASRLPASVARSSPSRRQRRSSSCSSACC-----RCSNASSVACFSGATGAAPALPASPSR 279
+ S +RSS SR + +S S S + R + S S G+ A P SR
Sbjct: 779 SRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSR 838
Query: 280 ---ELARHSFSRRSGPSGN 295
E H + G SG+
Sbjct: 839 LGEENKGHQMLVKMGWSGS 857
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.010
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 183 GLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLS---RSRASRLPASVARSS--- 236
G R + +AG+GS A LR S + +++AR LS RSR +S+AR
Sbjct: 214 GTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRF 273
Query: 237 PSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSG 291
P R S S C N SS A AA +P+ P R +RR G
Sbjct: 274 PPARPALSPSARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPG 328
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.010
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 183 GLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLS---RSRASRLPASVARSS--- 236
G R + +AG+GS A LR S + +++AR LS RSR +S+AR
Sbjct: 214 GTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRF 273
Query: 237 PSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSG 291
P R S S C N SS A AA +P+ P R +RR G
Sbjct: 274 PPARPALSPSARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPG 328
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.010
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 183 GLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLS---RSRASRLPASVARSS--- 236
G R + +AG+GS A LR S + +++AR LS RSR +S+AR
Sbjct: 214 GTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRF 273
Query: 237 PSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARHSFSRRSG 291
P R S S C N SS A AA +P+ P R +RR G
Sbjct: 274 PPARPALSPSARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPG 328
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 38.1 bits (87), Expect = 0.010
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 195 SVWPRAASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRC 254
+V P + S + S SR + S SRSR+S + SS S SSS SS+
Sbjct: 547 TVHPESKSKTKTRSRSRGRARNKTSKSRSRSS------SSSSSSSSSTSSSSGSSSSSGS 600
Query: 255 SNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNR 296
S++ S + S +T + + +S S + S SR G NR
Sbjct: 601 SSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNR 642
Score = 32.3 bits (72), Expect = 0.55
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 165 KLKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSR 224
K K R+ GR R + S +S+ S S SS+S SSS+ S SRS
Sbjct: 555 KTKTRSRSRGRARNKTSKSRSRSSSSSSSSSS--------STSSSSGSSSSSGSSSSRSS 606
Query: 225 ASRLPASVARSSPSRRQRRSSSCSSA 250
+S +S + S S R SS+ SS+
Sbjct: 607 SS---SSSSTSGSSSRDSSSSTSSSS 629
Score = 31.6 bits (70), Expect = 0.94
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 206 ASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSG 265
+ S SRSSS+ + S S + +S +S + SS SR SSS +S ++SS + S
Sbjct: 571 SKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSE 630
Query: 266 ATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVS 302
+ + + R+ R +R SG S + S
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSS 667
Score = 30.0 bits (66), Expect = 2.7
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 167 KYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRAS 226
K R+ + S+ + G+S+ SGS R++S +S++ SS + S S S S
Sbjct: 572 KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSES 631
Query: 227 RLPASVARSSPSRRQRRS 244
R + + R+ RRS
Sbjct: 632 RSRSRGRGHNRDRKHRRS 649
Score = 28.5 bits (62), Expect = 7.9
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 213 SSARACSLSRSRASRLPASVARSSPSR-RQRRSSSCSSACCRCSNASSVACFSGATG--A 269
S ++ + SRSR AR+ S+ R R SSS SS+ S++S + SG++ +
Sbjct: 552 SKSKTKTRSRSRGR------ARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRS 605
Query: 270 APALPASPSRELARHSFSRRSGPSGNRASIR 300
+ + +S S +R S S S S +R+ R
Sbjct: 606 SSSSSSSTSGSSSRDSSSSTSSSSESRSRSR 636
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 38.1 bits (87), Expect = 0.010
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 166 LKYRASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRA 225
++Y+ + +G GS G G S G G+ P S S SS A S SRSR
Sbjct: 2284 IEYQRNHSGGGGGGGSGGSGGGGGSGGGGA--PSGGS---GHSGGPSSCGGAPSTSRSRP 2338
Query: 226 SRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAP-ALPASPSR 279
SR+P V P +SS + A + S S+ GAAP A P++PSR
Sbjct: 2339 SRIPQPVRHHPPVLVSSAASSQAEA-DKMSGTSTPGPSLPPPGAAPEAGPSAPSR 2392
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 180 GSTGLRAQGASAGSGS-------VWPRAASCLRASSASRSSSARACSLSRS---RASRLP 229
G G RA+GA A GS R + SR ++R CS S S +AS P
Sbjct: 114 GPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAP 173
Query: 230 ASVARSSP-SRRQRRSSSCSSACCRCSNASSVACFSGAT 267
+ RS +RR+ RSSS SS+ S++SS + S ++
Sbjct: 174 GAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSS 212
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 37.7 bits (86), Expect = 0.013
Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 169 RASPAGRLRRRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSSSARACSLSRSRASRL 228
R+ R RG R++ S G S R+AS R+ S S S R+ SL RSR+ +
Sbjct: 129 RSRSRSHSRSRGRRYSRSRSRSRGRRS---RSASPRRSRSISLRRS-RSASLRRSRSGSI 184
Query: 229 PASVARSSPSRRQRRSSSCS-SACCRCSNASSVACFSGATGAAPALPASPSR 279
S SPSR + RS S S R + S S + +P ASP R
Sbjct: 185 KGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
Score = 28.9 bits (63), Expect = 6.1
Identities = 39/105 (37%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 200 AASCLRASSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCS-----SACCRC 254
A C R S RS S R+ S SRSR R S +RS R RRS S S S R
Sbjct: 116 AYDCHRYSRRRRSRS-RSRSHSRSRGRRYSRSRSRS----RGRRSRSASPRRSRSISLRR 170
Query: 255 SNASSVACFSGATGAAPALPASPSRELAR-HSFSR-RSGPSGNRA 297
S ++S+ + SPSR +R S SR RS S +R+
Sbjct: 171 SRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRS 215
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 167 KYRASPAGRLRRRGSTGLRAQGASAG-SGSVWPRAASCLRASSASRSSSARACSLSRSRA 225
+Y SPA RRG G R + S SG + R LR S+SRS S+ + S SRSR+
Sbjct: 452 RYSRSPA----RRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRS 507
Query: 226 ---SRLPASVARSSPSRRQRRSSSCSSACCR 253
SR + S SR + RS S S + R
Sbjct: 508 LTRSRSHSPSPSQSRSRSRSRSQSPSPSPAR 538
Score = 32.3 bits (72), Expect = 0.55
Identities = 45/136 (33%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 169 RASPAGRLRRRGSTGLRAQGASAGSGS-VWPRAASCLRASSASRSSSAR---ACSLSRSR 224
R+S R R G G A S S W R+ S R S SRS R S R
Sbjct: 393 RSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHR 452
Query: 225 ASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGATGAAPALPASPSRELARH 284
SR PA P RR+ RS S S R S + ++ +L S SR L R
Sbjct: 453 YSRSPARRGGYGP-RRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTR- 510
Query: 285 SFSRRSGPSGNRASIR 300
S S PS +R+ R
Sbjct: 511 SRSHSPSPSQSRSRSR 526
>gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 198
Score = 37.0 bits (84), Expect = 0.022
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 178 RRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSS--SARACSLSRSRASR-LPASVAR 234
RR LR + A + + + W A R+S++ RS S R R+R+S L S+A
Sbjct: 92 RRSRMALRPRSAPSRAPA-WYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
Query: 235 SSP---SRRQRRSSSC--SSACCRCSNASSVACFSGATGAA 270
+SP +RR R SS S AC CS+ S A S ATG +
Sbjct: 151 TSPRYCTRRPRTSSMSAPSRACAACSSLDSRARVSSATGVS 191
Score = 30.8 bits (68), Expect = 1.6
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 199 RAASCLRASSASRSSSARA---CSLSRSRAS--RLPASVARSSPSRRQRRSSSCSSACCR 253
+A++C R A SS AR CS + SR S RLP S R+ Q + SCS R
Sbjct: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
Query: 254 CSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVSCWATA 307
A P P R +R + RS PS R W TA
Sbjct: 76 EPTV--------AARTRPCSTRGPRR--SRMALRPRSAPS------RAPAWYTA 113
>gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 198
Score = 37.0 bits (84), Expect = 0.022
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 178 RRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSS--SARACSLSRSRASR-LPASVAR 234
RR LR + A + + + W A R+S++ RS S R R+R+S L S+A
Sbjct: 92 RRSRMALRPRSAPSRAPA-WYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
Query: 235 SSP---SRRQRRSSSC--SSACCRCSNASSVACFSGATGAA 270
+SP +RR R SS S AC CS+ S A S ATG +
Sbjct: 151 TSPRYCTRRPRTSSMSAPSRACAACSSLDSRARVSSATGVS 191
Score = 30.8 bits (68), Expect = 1.6
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 199 RAASCLRASSASRSSSARA---CSLSRSRAS--RLPASVARSSPSRRQRRSSSCSSACCR 253
+A++C R A SS AR CS + SR S RLP S R+ Q + SCS R
Sbjct: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
Query: 254 CSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVSCWATA 307
A P P R +R + RS PS R W TA
Sbjct: 76 EPTV--------AARTRPCSTRGPRR--SRMALRPRSAPS------RAPAWYTA 113
>gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 37.0 bits (84), Expect = 0.022
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 178 RRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSS--SARACSLSRSRASR-LPASVAR 234
RR LR + A + + + W A R+S++ RS S R R+R+S L S+A
Sbjct: 92 RRSRMALRPRSAPSRAPA-WYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
Query: 235 SSP---SRRQRRSSSC--SSACCRCSNASSVACFSGATGAA 270
+SP +RR R SS S AC CS+ S A S ATG +
Sbjct: 151 TSPRYCTRRPRTSSMSAPSRACAACSSLDSRARVSSATGVS 191
Score = 30.8 bits (68), Expect = 1.6
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 199 RAASCLRASSASRSSSARA---CSLSRSRAS--RLPASVARSSPSRRQRRSSSCSSACCR 253
+A++C R A SS AR CS + SR S RLP S R+ Q + SCS R
Sbjct: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
Query: 254 CSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVSCWATA 307
A P P R +R + RS PS R W TA
Sbjct: 76 EPTV--------AARTRPCSTRGPRR--SRMALRPRSAPS------RAPAWYTA 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.129 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,853,907
Number of Sequences: 37866
Number of extensions: 626475
Number of successful extensions: 4320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 3481
Number of HSP's gapped (non-prelim): 735
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.