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Search of human proteins with 239741302
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741302 PREDICTED: hypothetical protein XP_002342157 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741302 PREDICTED: hypothetical protein XP_002342157 [Homo ... 388 e-108
gi|239741291 PREDICTED: hypothetical protein XP_002342159 [Homo ... 233 7e-62
gi|239758077 PREDICTED: hypothetical protein [Homo sapiens] 231 3e-61
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 42 4e-04
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 37 0.009
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 36 0.020
gi|112421108 capicua homolog [Homo sapiens] 35 0.026
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 35 0.044
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 34 0.058
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 34 0.058
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 34 0.058
gi|55741655 anoctamin 8 [Homo sapiens] 34 0.076
gi|118402590 myosin XV [Homo sapiens] 34 0.076
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 34 0.076
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 34 0.076
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 34 0.076
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 34 0.076
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 34 0.076
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 33 0.099
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.099
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 33 0.099
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 33 0.099
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 33 0.099
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 33 0.099
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 33 0.099
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 33 0.099
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 33 0.099
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 33 0.099
gi|7706501 WW domain binding protein 11 [Homo sapiens] 33 0.099
>gi|239741302 PREDICTED: hypothetical protein XP_002342157 [Homo
sapiens]
Length = 177
Score = 388 bits (997), Expect = e-108
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAPSCRSTFLECCLWDNRNALTWLSGNYCYLLGIQTLPANLHDEVPWCNETLRCGPPCPF 60
MAPSCRSTFLECCLWDNRNALTWLSGNYCYLLGIQTLPANLHDEVPWCNETLRCGPPCPF
Sbjct: 1 MAPSCRSTFLECCLWDNRNALTWLSGNYCYLLGIQTLPANLHDEVPWCNETLRCGPPCPF 60
Query: 61 CSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRAS 120
CSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRAS
Sbjct: 61 CSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRAS 120
Query: 121 WHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 177
WHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS
Sbjct: 121 WHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 177
>gi|239741291 PREDICTED: hypothetical protein XP_002342159 [Homo
sapiens]
Length = 109
Score = 233 bits (594), Expect = 7e-62
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 69 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 128
MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP
Sbjct: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
Query: 129 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 177
DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS
Sbjct: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 109
>gi|239758077 PREDICTED: hypothetical protein [Homo sapiens]
Length = 109
Score = 231 bits (588), Expect = 3e-61
Identities = 108/109 (99%), Positives = 108/109 (99%)
Query: 69 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 128
MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP
Sbjct: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
Query: 129 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 177
DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP PRDSFHSGIS
Sbjct: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPTPRDSFHSGIS 109
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 31/146 (21%)
Query: 55 GPPCPFCSRCLSL----AMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSAS 110
GPP PF S YPA VP P+ + P F + P P G +A
Sbjct: 83 GPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYG--APTDPAAAG 140
Query: 111 LQGPLPGRAS--WHPAIGG----PDTPARDPATQEVPTPSQSDPG----------PRADR 154
GP +S W P +GG P+ P P P P Q+ PG P
Sbjct: 141 PLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQA-PGAAPPVPWGTVPPGAW 199
Query: 155 SPPLKRLLP--------LYPRPRDSF 172
PP P LYP P + F
Sbjct: 200 GPPAPYPAPTGSYPTPGLYPTPSNPF 225
Score = 31.6 bits (70), Expect = 0.38
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 71 PALLVPSSSPSSV-FGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPD 129
P+ L PS++PS+V FG TG +P S GP PG PA P
Sbjct: 50 PSGLPPSATPSTVPFGPAPTGM--YP------------SVPPTGPPPGP----PAPFPPS 91
Query: 130 TPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRP 168
P+ P P P+ PGP P P PRP
Sbjct: 92 GPSCPPPGGPYPAPTVPGPGPTGPYPTP-NMPFPELPRP 129
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 38.9 bits (89), Expect = 0.002
Identities = 38/107 (35%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 71 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPA--IGGP 128
P L PSSS SS + S G G+ GS G RAS GG
Sbjct: 43 PPPLAPSSSSSS-----GSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGT 97
Query: 129 DTPARDPATQEVPTPSQSDPGPRADRSP-PLKRLLPLY---PRPRDS 171
AR+P +P PS PGP+ SP PL LPL P P D+
Sbjct: 98 ALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDT 144
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 37.0 bits (84), Expect = 0.009
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 77 SSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPA 136
S++P S P T S P QG I G AS G P A GP P + P
Sbjct: 775 SAAPGSPVPAPPTKASALPVEQGPAEPIPPGVAS-GGLRPDALGPTTAHHGPRHPPKPPR 833
Query: 137 TQEVPTPSQSDPGP-------RADRSPPLKRLLPLYPRPRD 170
++ P Q GP R D+SP +P PRP D
Sbjct: 834 SKATERPGQEPEGPGATPAGERDDQSPD---SVPERPRPAD 871
Score = 28.9 bits (63), Expect = 2.4
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 106 SGSASLQGPLPGRASWHPAIGGPDTPARDPAT--QEVPTP----SQSDPGPRADRSPPLK 159
S S+ + P PG A GP P DP+T + +PTP S++ GPRA P K
Sbjct: 211 SESSWRERPAPGNA-------GPRRPPGDPSTDPEVLPTPEGPESETSRGPRAS---PTK 260
Query: 160 RLL 162
LL
Sbjct: 261 ALL 263
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 35.8 bits (81), Expect = 0.020
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 109 ASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPP 157
A +GP P WH A+ P +PA PATQE P P+ S PR P
Sbjct: 43 AERRGPQP----WHAAL--PSSPAPAPATQEAPRPASSLRPPRCGVPDP 85
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 35.4 bits (80), Expect = 0.026
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 76 PSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPAR-- 133
PSSS SS + + + G + +SG S GPL P GGP TP++
Sbjct: 532 PSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPP---PGAGGPATPSKAT 588
Query: 134 -----DPATQEVPTPSQ----SDPGPRADRSPP 157
DPAT P PGP +PP
Sbjct: 589 RFLPMDPATFRRKRPESVGGLEPPGPSVIAAPP 621
Score = 28.9 bits (63), Expect = 2.4
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P P+ P S GP SG+A PLP P GP P +
Sbjct: 1535 LPVPPPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPP-----PPESGPGQPGWE 1589
Query: 135 PATQEVPTPSQSDPGP 150
A P PS PGP
Sbjct: 1590 GA----PQPSPPPPGP 1601
Score = 26.9 bits (58), Expect = 9.3
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 20/127 (15%)
Query: 55 GPPCPFCSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRV----------- 103
GPP P + + +P+ S + S V P+ +Q P P+ +V
Sbjct: 1137 GPPAPATATPAPTSPFPSATAGSMTYSLV--APK---AQRPSPKAPQKVKAAIASIPVGS 1191
Query: 104 IQSGSASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLP 163
++G++ GP P + P GP P ++ P+ P P + P R P
Sbjct: 1192 FEAGASGRPGPAPRQ----PLEPGPVREPTAPESELEGQPTPPAPPPLPETWTPTARSSP 1247
Query: 164 LYPRPRD 170
P P +
Sbjct: 1248 PLPPPAE 1254
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 34.7 bits (78), Expect = 0.044
Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query: 53 RCGP-PCPFCSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASL 111
R GP PCP CSR + + P L + + G P G P + R + A L
Sbjct: 692 RRGPLPCPLCSREGACSCLP--LERGDAVAGWGGHPALGCPHPPEDDSSLRAERGSLADL 749
Query: 112 Q------------GPLPGRAS-WHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPPL 158
PL G A+ +P G P P P P + P P + + P
Sbjct: 750 PMAPPASAPPEFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPG 809
Query: 159 KRLLPLYPRPRDS 171
L P+P DS
Sbjct: 810 SGLSSPGPKPGDS 822
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 34.3 bits (77), Expect = 0.058
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 87 PETGFSQWPGPQGNCRVIQSGSASLQGPLP--------GRASWHPAIGGPDTPARDPATQ 138
P S+WPGPQ + +A L P P AS P GG ARDP
Sbjct: 321 PTAPSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKRPRPGGVSPEARDPPKG 380
Query: 139 EVP---TPSQSDPGPRADRSP 156
E P + + + GP R P
Sbjct: 381 ENPLCSSEAAGETGPTQVRGP 401
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 34.3 bits (77), Expect = 0.058
Identities = 34/119 (28%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 42 HDEVPWC---NETLRCGPPCPFCSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQ 98
H P C + R PPCP C + P PS P + P PQ
Sbjct: 341 HSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRS---PASPSCPSPVPQ 397
Query: 99 GNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPP 157
V S Q P P R S P P PA P P P + RA PP
Sbjct: 398 RRSPV----PPSCQSPSPQRRSPVP----PSCPAPQPRPPPPPPPGERTLAERAYAKPP 448
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 112 QGPLPGRASWHPAIGGPDTPARDPATQEVPTP--SQSDPGPRADRSPPLKRLLPLYP 166
Q P+P R S P P R PA+ P+P + P P + +SP +R P+ P
Sbjct: 364 QSPVPQRRSPVPPCPSPQQ-RRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPP 419
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 34.3 bits (77), Expect = 0.058
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 31/116 (26%)
Query: 38 PANLHDEVPWCNETLRCGPPCPFCSRCLSLAMYPALLVPSSSPSSVFGVPETGFSQWPGP 97
P L +E+PW + +L ++CL LA ALL S F +
Sbjct: 110 PPALSEELPWGDLSL---------NKCLVLASLVALL------GSAFQL----------- 143
Query: 98 QGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRAD 153
CR G A+LQ +P W P P P+ E P + P PRA+
Sbjct: 144 ---CRDAVPGEAALQARVP--EPWVPPSSAPREPSSPLPKFEAQAPPSAPPAPRAE 194
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 33.9 bits (76), Expect = 0.076
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 87 PETGFSQWPGPQG---------------NCR-VIQSGSASLQGPLPGRASWHPAIGGPDT 130
P G QW GP G C +G PLPG AS++ P
Sbjct: 1144 PPAGCWQWDGPWGCGGEGAAPRQALAAAECPPCAMAGPPPAPQPLPGDASFYSLPPPPLP 1203
Query: 131 PARDPATQEVPTPSQSDPGPRA 152
P DP P+PS S P P+A
Sbjct: 1204 PTSDPLETPAPSPSPS-PSPQA 1224
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 33.9 bits (76), Expect = 0.076
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 95 PGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRADR 154
P PQ R + SA L P+P R P+ G P P PA +P P+ S G
Sbjct: 645 PAPQPAPRTLSHWSALLSPPVPPRP---PSSGPPPAPPLSPALSGLPRPA-SPYGSLRRH 700
Query: 155 SPPLKRLLPLYPRPRDSF 172
PP + P P+ S+
Sbjct: 701 PPPWAAPAHVPPAPQASW 718
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.076
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 102 RVIQSGSASLQGPL-PGRASWHPAIGGPDTP-ARDPATQEVPTPSQSDPGPRADRSPPLK 159
RV Q GPL G +W P G + P A+DP + P PR DR PP
Sbjct: 624 RVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPR------APRVDRKPPEH 677
Query: 160 R 160
R
Sbjct: 678 R 678
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.076
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 102 RVIQSGSASLQGPL-PGRASWHPAIGGPDTP-ARDPATQEVPTPSQSDPGPRADRSPPLK 159
RV Q GPL G +W P G + P A+DP + P PR DR PP
Sbjct: 624 RVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPR------APRVDRKPPEH 677
Query: 160 R 160
R
Sbjct: 678 R 678
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.076
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 102 RVIQSGSASLQGPL-PGRASWHPAIGGPDTP-ARDPATQEVPTPSQSDPGPRADRSPPLK 159
RV Q GPL G +W P G + P A+DP + P PR DR PP
Sbjct: 624 RVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPR------APRVDRKPPEH 677
Query: 160 R 160
R
Sbjct: 678 R 678
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 33.9 bits (76), Expect = 0.076
Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 54 CGPPCPFCSRCLSLAMYPALLVPSSSPSSVF----------GV-PETGFS---QWPGPQG 99
CG P P S + A +V S P+S GV PE+ S +P P
Sbjct: 132 CGQPSPHGSHSHAQPPQQAPIVESGQPASTLSSGYTYPTATGVQPESSASIVTSYPPPSY 191
Query: 100 N--CRVIQSGS-ASLQGPLPGRAS-WHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRS 155
N C + S + + AS ++P P P P P+ S PRAD
Sbjct: 192 NPTCTAYTAPSYPNYDASVYSAASPFYPPAQPPPPPGPPQQLPPPPAPAGSGSSPRADSK 251
Query: 156 PPLKRLLP 163
PPL LP
Sbjct: 252 PPLPSKLP 259
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 33.9 bits (76), Expect = 0.076
Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 98 QGNCRVIQSGS----ASLQGPLPGRASWHPAIGGPDTPARDPATQEVP--TPSQSDPGPR 151
+G+ Q GS AS P R+ HP++ TP R P Q P SQ PGP+
Sbjct: 961 EGHSPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQQPPPPVATSQHHPGPQ 1020
Query: 152 ---ADRSPPLKRL-LPLYPRPR 169
A RSP RL L RPR
Sbjct: 1021 SRDAGRSPSQPRLSLTQAGRPR 1042
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 76 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 132
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 133 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 167
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 3.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 134
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 135 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 171
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.099
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSG------SASLQGPLPGRASWHPAIGGP 128
V S +P P T + P P + ++ SA+ Q P A P
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP 216
Query: 129 DTPARDPA----------TQEVPTPSQSDPGPRADRSPPLKRLLPLYP 166
PA PA T PTPS + P P + +PP +P P
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 66 SLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAI 125
S + P L+ + PS F T + P N + + ++ S A
Sbjct: 98 SSVVNPTLVATTQIPSVTFPSASTKITTLP----NVTFLPQNATTISSRENVNTSSSVAT 153
Query: 126 GGP-DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP 166
P ++PA T PTPS + P P + +PP P P
Sbjct: 154 LAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTP 195
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.099
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSG------SASLQGPLPGRASWHPAIGGP 128
V S +P P T + P P + ++ SA+ Q P A P
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP 216
Query: 129 DTPARDPA----------TQEVPTPSQSDPGPRADRSPPLKRLLPLYP 166
PA PA T PTPS + P P + +PP +P P
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 66 SLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAI 125
S + P L+ + PS F T + P N + + ++ S A
Sbjct: 98 SSVVNPTLVATTQIPSVTFPSASTKITTLP----NVTFLPQNATTISSRENVNTSSSVAT 153
Query: 126 GGP-DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP 166
P ++PA T PTPS + P P + +PP P P
Sbjct: 154 LAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTP 195
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.099
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 75 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSG------SASLQGPLPGRASWHPAIGGP 128
V S +P P T + P P + ++ SA+ Q P A P
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP 216
Query: 129 DTPARDPA----------TQEVPTPSQSDPGPRADRSPPLKRLLPLYP 166
PA PA T PTPS + P P + +PP +P P
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 66 SLAMYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAI 125
S + P L+ + PS F T + P N + + ++ S A
Sbjct: 98 SSVVNPTLVATTQIPSVTFPSASTKITTLP----NVTFLPQNATTISSRENVNTSSSVAT 153
Query: 126 GGP-DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP 166
P ++PA T PTPS + P P + +PP P P
Sbjct: 154 LAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTP 195
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 33.5 bits (75), Expect = 0.099
Identities = 32/98 (32%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 71 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDT 130
P L P + P G P TG P P + G L+GPLP P G P
Sbjct: 411 PPLGPPPAPPLRPPG-PPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPG 469
Query: 131 PARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRP 168
P P P P P PR PP +P PRP
Sbjct: 470 PPPGPPPGLPPGPPPRGPPPRL--PPPAPPGIP-PPRP 504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,273,422
Number of Sequences: 37866
Number of extensions: 668657
Number of successful extensions: 3990
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 3570
Number of HSP's gapped (non-prelim): 754
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.