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Search of human proteins with 239741291
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741291 PREDICTED: hypothetical protein XP_002342159 [Homo
sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741302 PREDICTED: hypothetical protein XP_002342157 [Homo ... 233 2e-62
gi|239741291 PREDICTED: hypothetical protein XP_002342159 [Homo ... 233 2e-62
gi|239758077 PREDICTED: hypothetical protein [Homo sapiens] 231 1e-61
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 39 9e-04
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 39 0.001
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 37 0.003
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 36 0.008
gi|112421108 capicua homolog [Homo sapiens] 35 0.010
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 34 0.022
gi|55741655 anoctamin 8 [Homo sapiens] 34 0.029
gi|118402590 myosin XV [Homo sapiens] 34 0.029
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 34 0.029
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 34 0.029
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 34 0.029
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 34 0.029
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 33 0.038
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.038
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 33 0.038
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 33 0.038
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 33 0.038
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 33 0.038
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 33 0.038
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 33 0.038
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 33 0.038
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 33 0.038
gi|7706501 WW domain binding protein 11 [Homo sapiens] 33 0.038
gi|12669911 E2F transcription factor 1 [Homo sapiens] 33 0.049
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 33 0.049
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 33 0.049
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 33 0.049
>gi|239741302 PREDICTED: hypothetical protein XP_002342157 [Homo
sapiens]
Length = 177
Score = 233 bits (594), Expect = 2e-62
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP
Sbjct: 69 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 128
Query: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 109
DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS
Sbjct: 129 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 177
>gi|239741291 PREDICTED: hypothetical protein XP_002342159 [Homo
sapiens]
Length = 109
Score = 233 bits (594), Expect = 2e-62
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP
Sbjct: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
Query: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 109
DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS
Sbjct: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 109
>gi|239758077 PREDICTED: hypothetical protein [Homo sapiens]
Length = 109
Score = 231 bits (588), Expect = 1e-61
Identities = 108/109 (99%), Positives = 108/109 (99%)
Query: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP
Sbjct: 1 MYPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP 60
Query: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPRDSFHSGIS 109
DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP PRDSFHSGIS
Sbjct: 61 DTPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPTPRDSFHSGIS 109
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 38.9 bits (89), Expect = 9e-04
Identities = 38/107 (35%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 3 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPA--IGGP 60
P L PSSS SS + S G G+ GS G RAS GG
Sbjct: 43 PPPLAPSSSSSS-----GSSGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGT 97
Query: 61 DTPARDPATQEVPTPSQSDPGPRADRSP-PLKRLLPLY---PRPRDS 103
AR+P +P PS PGP+ SP PL LPL P P D+
Sbjct: 98 ALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDT 144
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 38.5 bits (88), Expect = 0.001
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 27/127 (21%)
Query: 2 YPALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRAS--WHPAIGG 59
YPA VP P+ + P F + P P G +A GP +S W P +GG
Sbjct: 102 YPAPTVPGPGPTGPYPTPNMPFPELPRPYG--APTDPAAAGPLGPWGSMSSGPWAPGMGG 159
Query: 60 ----PDTPARDPATQEVPTPSQSDPG----------PRADRSPPLKRLLP--------LY 97
P+ P P P P Q+ PG P PP P LY
Sbjct: 160 QYPTPNMPYPSPGPYPAPPPPQA-PGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTPGLY 218
Query: 98 PRPRDSF 104
P P + F
Sbjct: 219 PTPSNPF 225
Score = 31.6 bits (70), Expect = 0.14
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 3 PALLVPSSSPSSV-FGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPD 61
P+ L PS++PS+V FG TG +P S GP PG PA P
Sbjct: 50 PSGLPPSATPSTVPFGPAPTGM--YP------------SVPPTGPPPGP----PAPFPPS 91
Query: 62 TPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRP 100
P+ P P P+ PGP P P PRP
Sbjct: 92 GPSCPPPGGPYPAPTVPGPGPTGPYPTP-NMPFPELPRP 129
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 9 SSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPA 68
S++P S P T S P QG I G AS G P A GP P + P
Sbjct: 775 SAAPGSPVPAPPTKASALPVEQGPAEPIPPGVAS-GGLRPDALGPTTAHHGPRHPPKPPR 833
Query: 69 TQEVPTPSQSDPGP-------RADRSPPLKRLLPLYPRPRD 102
++ P Q GP R D+SP +P PRP D
Sbjct: 834 SKATERPGQEPEGPGATPAGERDDQSPD---SVPERPRPAD 871
Score = 28.9 bits (63), Expect = 0.93
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 38 SGSASLQGPLPGRASWHPAIGGPDTPARDPAT--QEVPTP----SQSDPGPRADRSPPLK 91
S S+ + P PG A GP P DP+T + +PTP S++ GPRA P K
Sbjct: 211 SESSWRERPAPGNA-------GPRRPPGDPSTDPEVLPTPEGPESETSRGPRAS---PTK 260
Query: 92 RLL 94
LL
Sbjct: 261 ALL 263
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 35.8 bits (81), Expect = 0.008
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 41 ASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRADRSPP 89
A +GP P WH A+ P +PA PATQE P P+ S PR P
Sbjct: 43 AERRGPQP----WHAAL--PSSPAPAPATQEAPRPASSLRPPRCGVPDP 85
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 8 PSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPAR-- 65
PSSS SS + + + G + +SG S GPL P GGP TP++
Sbjct: 532 PSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPP---PGAGGPATPSKAT 588
Query: 66 -----DPATQEVPTPSQ----SDPGPRADRSPP 89
DPAT P PGP +PP
Sbjct: 589 RFLPMDPATFRRKRPESVGGLEPPGPSVIAAPP 621
Score = 28.9 bits (63), Expect = 0.93
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P P+ P S GP SG+A PLP P GP P +
Sbjct: 1535 LPVPPPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPP-----PPESGPGQPGWE 1589
Query: 67 PATQEVPTPSQSDPGP 82
A P PS PGP
Sbjct: 1590 GA----PQPSPPPPGP 1601
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 19 PETGFSQWPGPQGNCRVIQSGSASLQGPLP--------GRASWHPAIGGPDTPARDPATQ 70
P S+WPGPQ + +A L P P AS P GG ARDP
Sbjct: 321 PTAPSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKRPRPGGVSPEARDPPKG 380
Query: 71 EVP---TPSQSDPGPRADRSP 88
E P + + + GP R P
Sbjct: 381 ENPLCSSEAAGETGPTQVRGP 401
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 19 PETGFSQWPGPQG---------------NCR-VIQSGSASLQGPLPGRASWHPAIGGPDT 62
P G QW GP G C +G PLPG AS++ P
Sbjct: 1144 PPAGCWQWDGPWGCGGEGAAPRQALAAAECPPCAMAGPPPAPQPLPGDASFYSLPPPPLP 1203
Query: 63 PARDPATQEVPTPSQSDPGPRA 84
P DP P+PS S P P+A
Sbjct: 1204 PTSDPLETPAPSPSPS-PSPQA 1224
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 33.9 bits (76), Expect = 0.029
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 27 PGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPGPRADR 86
P PQ R + SA L P+P R P+ G P P PA +P P+ S G
Sbjct: 645 PAPQPAPRTLSHWSALLSPPVPPRP---PSSGPPPAPPLSPALSGLPRPA-SPYGSLRRH 700
Query: 87 SPPLKRLLPLYPRPRDSF 104
PP + P P+ S+
Sbjct: 701 PPPWAAPAHVPPAPQASW 718
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 45 GPLPGRASWHPAIGGPDTPARDPATQEVPTPS-QSDPGPRADRSPPLKRLLP 95
GP P + +G P PA + PTP+ D P D +PP K +LP
Sbjct: 1006 GPTPEKPEEEATLGDPQLPAE----TKPPTPAPPKDVTPPKDITPP-KDVLP 1052
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 34 RVIQSGSASLQGPL-PGRASWHPAIGGPDTP-ARDPATQEVPTPSQSDPGPRADRSPPLK 91
RV Q GPL G +W P G + P A+DP + P PR DR PP
Sbjct: 624 RVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPR------APRVDRKPPEH 677
Query: 92 R 92
R
Sbjct: 678 R 678
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 34 RVIQSGSASLQGPL-PGRASWHPAIGGPDTP-ARDPATQEVPTPSQSDPGPRADRSPPLK 91
RV Q GPL G +W P G + P A+DP + P PR DR PP
Sbjct: 624 RVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPR------APRVDRKPPEH 677
Query: 92 R 92
R
Sbjct: 678 R 678
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 34 RVIQSGSASLQGPL-PGRASWHPAIGGPDTP-ARDPATQEVPTPSQSDPGPRADRSPPLK 91
RV Q GPL G +W P G + P A+DP + P PR DR PP
Sbjct: 624 RVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPR------APRVDRKPPEH 677
Query: 92 R 92
R
Sbjct: 678 R 678
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 33.9 bits (76), Expect = 0.029
Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 30 QGNCRVIQSGS----ASLQGPLPGRASWHPAIGGPDTPARDPATQEVP--TPSQSDPGPR 83
+G+ Q GS AS P R+ HP++ TP R P Q P SQ PGP+
Sbjct: 961 EGHSPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQQPPPPVATSQHHPGPQ 1020
Query: 84 ---ADRSPPLKRL-LPLYPRPR 101
A RSP RL L RPR
Sbjct: 1021 SRDAGRSPSQPRLSLTQAGRPR 1042
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 8 PSSSPSSVFGVPETGFSQ-WP-GPQGNCRVIQSGSASLQGPLP-GRASWHPAIGGPDTPA 64
PS P + G P G + WP GP N S L P P GR S P PA
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS-------PAPPA 317
Query: 65 RDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPR 99
PA V P PG A +P ++PL+ +
Sbjct: 318 VPPAASPVMPPQTQSPGQPAQPAP----MVPLHQK 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARD 66
+P+ P SV TG PGP G GP P S +GGP+ P
Sbjct: 217 MPTLPPPSVSA---TGPGPGPGP---------GPGPGPGPAPPNYSRPHGMGGPNMPPPG 264
Query: 67 PATQEVPTPSQS--------DPGPRADRSPPL---KRLLPLYPRPRDS 103
P+ P Q GP A+ + P ++L+P P R S
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSG------SASLQGPLPGRASWHPAIGGP 60
V S +P P T + P P + ++ SA+ Q P A P
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP 216
Query: 61 DTPARDPA----------TQEVPTPSQSDPGPRADRSPPLKRLLPLYP 98
PA PA T PTPS + P P + +PP +P P
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 3 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP-D 61
P L+ + PS F T + P N + + ++ S A P +
Sbjct: 103 PTLVATTQIPSVTFPSASTKITTLP----NVTFLPQNATTISSRENVNTSSSVATLAPVN 158
Query: 62 TPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP 98
+PA T PTPS + P P + +PP P P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTP 195
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 9 SSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPA 68
SS+P P T + P P + ++ + P P + P+ A
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP---PTPSATTLDPS----SASAPPET 280
Query: 69 TQEVPTPSQSDPGPRADRSPPLKRLLPL 96
T PTPS + P P + +P P+
Sbjct: 281 TAAPPTPSATTPAPPSSPAPQETTAAPI 308
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSG------SASLQGPLPGRASWHPAIGGP 60
V S +P P T + P P + ++ SA+ Q P A P
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP 216
Query: 61 DTPARDPA----------TQEVPTPSQSDPGPRADRSPPLKRLLPLYP 98
PA PA T PTPS + P P + +PP +P P
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 3 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP-D 61
P L+ + PS F T + P N + + ++ S A P +
Sbjct: 103 PTLVATTQIPSVTFPSASTKITTLP----NVTFLPQNATTISSRENVNTSSSVATLAPVN 158
Query: 62 TPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP 98
+PA T PTPS + P P + +PP P P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTP 195
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 9 SSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPA 68
SS+P P T + P P + ++ + P P + P+ A
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP---PTPSATTLDPS----SASAPPET 280
Query: 69 TQEVPTPSQSDPGPRADRSPPLKRLLPL 96
T PTPS + P P + +P P+
Sbjct: 281 TAAPPTPSATTPAPPSSPAPQETTAAPI 308
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 7 VPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSG------SASLQGPLPGRASWHPAIGGP 60
V S +P P T + P P + ++ SA+ Q P A P
Sbjct: 157 VNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP 216
Query: 61 DTPARDPA----------TQEVPTPSQSDPGPRADRSPPLKRLLPLYP 98
PA PA T PTPS + P P + +PP +P P
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 3 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGP-D 61
P L+ + PS F T + P N + + ++ S A P +
Sbjct: 103 PTLVATTQIPSVTFPSASTKITTLP----NVTFLPQNATTISSRENVNTSSSVATLAPVN 158
Query: 62 TPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYP 98
+PA T PTPS + P P + +PP P P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTP 195
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 9 SSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPA 68
SS+P P T + P P + ++ + P P + P+ A
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP---PTPSATTLDPS----SASAPPET 280
Query: 69 TQEVPTPSQSDPGPRADRSPPLKRLLPL 96
T PTPS + P P + +P P+
Sbjct: 281 TAAPPTPSATTPAPPSSPAPQETTAAPI 308
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 33.5 bits (75), Expect = 0.038
Identities = 32/98 (32%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 3 PALLVPSSSPSSVFGVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDT 62
P L P + P G P TG P P + G L+GPLP P G P
Sbjct: 411 PPLGPPPAPPLRPPG-PPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPG 469
Query: 63 PARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRP 100
P P P P P PR PP +P PRP
Sbjct: 470 PPPGPPPGLPPGPPPRGPPPRL--PPPAPPGIP-PPRP 504
Score = 25.8 bits (55), Expect = 7.9
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 46 PLPGRASWHPAIGGPDTPARDPATQEVPTPSQSDPG-PRADRSP-------PLKRLLPLY 97
P+PG P +G P P P P PG P R P PL RLLP
Sbjct: 406 PMPGP----PPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPG 461
Query: 98 PRP 100
P P
Sbjct: 462 PPP 464
>gi|12669911 E2F transcription factor 1 [Homo sapiens]
Length = 437
Score = 33.1 bits (74), Expect = 0.049
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 51 ASWHPAIGGPDTPARDP--------ATQEVPTPSQSDPGPRADRSPPLKRLLPL 96
AS PA GP PA P AT + P P+ S P P R PP+KR L L
Sbjct: 42 ASAPPAPTGPAAPAAGPCDPDLLLFATPQAPRPTPSAPRPALGR-PPVKRRLDL 94
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 25 QWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPA------RDPATQEVPTPSQS 78
Q PGP G Q GSA+ + +P R + P G P P + P +P P Q
Sbjct: 533 QPPGPVGILHFSQPGSATTRPFIPPRQPFLPGPGQPFLPTHTQPNLQGPLHPPLPPPHQP 592
Query: 79 DPGPRADRSPP 89
P + PP
Sbjct: 593 QPQQPQQQPPP 603
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 55 PAIGGPDTPARDPATQE--VPTPSQSDPGPRADRSP 88
P +GGP P PAT E P P + DPGP +P
Sbjct: 367 PVLGGPPGPGDLPATPEPPYPIPEEGDPGPPGLSTP 402
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 33.1 bits (74), Expect = 0.049
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 17 GVPETGFSQWPGPQGN-CRVIQSGSASLQGPLP-------------GRASWHPAIGGPDT 62
G P G Q P PQG+ R +S QGP P G+ P GG
Sbjct: 91 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 63 PARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPR 101
P + P Q D R+ RSPP K P P P+
Sbjct: 151 QGPPPPGKPQGPPPQGDNKSRSSRSPPGK---PQGPPPQ 186
Score = 30.8 bits (68), Expect = 0.24
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 17 GVPETGFSQWPGPQGNCRVIQS-------------GSASLQGPLP--GRASWHPAIGGPD 61
G P G Q P PQG+ + S G QGP P G+ P GG
Sbjct: 152 GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 211
Query: 62 TPARDPATQEVPTPSQSDPGPRADRSPPLKRLLPLYPRPR 101
P + P Q D ++ RSPP K P P P+
Sbjct: 212 PQGPPPPGKPQGPPPQGDNKSQSARSPPGK---PQGPPPQ 248
Score = 30.0 bits (66), Expect = 0.42
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 30/106 (28%)
Query: 17 GVPETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGG--PDTPARDPATQEVPT 74
G P G Q P PQG+ + S S + P PG+ P GG P P P + P
Sbjct: 214 GPPPPGKPQGPPPQGDNK-----SQSARSP-PGKPQGPPPQGGNQPQGPPPPPGKPQGPP 267
Query: 75 PS-----QSDPGP--------------RADRSPPLKRLLPLYPRPR 101
P Q P P R+ RSPP K P P P+
Sbjct: 268 PQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGK---PQGPPPQ 310
Score = 30.0 bits (66), Expect = 0.42
Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 17 GVPETGFSQWPGPQGNCRVIQS-------------GSASLQGPLP--GRASWHPAIGGPD 61
G P G Q P PQG + S G QGP P G+ P GG
Sbjct: 276 GPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 335
Query: 62 TPARDPATQEVPTPSQSDPGPRADRSPPLK 91
P + P Q R+ RSPP K
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSARSPPGK 365
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 19 PETGFSQWPGPQGNCRVIQSGSASLQGPLPGRASWHPAIGGPDTPARDPATQEVPTPSQS 78
P G Q P PQG G+ P PG+ P G R P + P Q
Sbjct: 73 PPPGKPQGPPPQG-------GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 125
Query: 79 DPGPRADRSPPLKRLLPLYPRPR 101
P+ PP K P P P+
Sbjct: 126 GNQPQGPPPPPGK---PQGPPPQ 145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,679,336
Number of Sequences: 37866
Number of extensions: 450329
Number of successful extensions: 2652
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 2240
Number of HSP's gapped (non-prelim): 787
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.