Guide to the Human Genome
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Search of human proteins with 239741208

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741208 PREDICTED: hypothetical protein [Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747383 PREDICTED: hypothetical protein [Homo sapiens]           595   e-170
gi|239741208 PREDICTED: hypothetical protein [Homo sapiens]           595   e-170
gi|169160855 PREDICTED: hypothetical protein [Homo sapiens]           546   e-156
gi|239753196 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  
gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo ...    31   1.1  
gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo ...    31   1.1  
gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]            30   2.5  
gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo ...    30   2.5  
gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo ...    30   2.5  
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]            30   3.3  
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ...    29   5.6  
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ...    29   5.6  
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ...    29   5.6  
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ...    29   5.6  
gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]             29   5.6  
gi|223634006 hypothetical protein LOC441869 [Homo sapiens]             28   7.3  
gi|224549033 zinc finger protein 529 isoform b [Homo sapiens]          28   7.3  
gi|224549030 zinc finger protein 529 isoform a [Homo sapiens]          28   7.3  
gi|224549028 zinc finger protein 529 isoform a [Homo sapiens]          28   7.3  
gi|4758378 vascular endothelial growth factor D preproprotein [H...    28   7.3  
gi|117190519 sialidase 3 [Homo sapiens]                                28   7.3  
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]                28   9.5  
gi|187960100 ubiquitin protein ligase E3C [Homo sapiens]               28   9.5  
gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]            28   9.5  
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        28   9.5  

>gi|239747383 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 291

 Score =  595 bits (1535), Expect = e-170
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
           MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ
Sbjct: 1   MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60

Query: 61  NCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAV 120
           NCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAV
Sbjct: 61  NCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAV 120

Query: 121 PSLPEHVDVCFGFLTSALPKVFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHC 180
           PSLPEHVDVCFGFLTSALPKVFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHC
Sbjct: 121 PSLPEHVDVCFGFLTSALPKVFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHC 180

Query: 181 LRAAVYALEGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCN 240
           LRAAVYALEGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCN
Sbjct: 181 LRAAVYALEGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCN 240

Query: 241 TESTMSSPCPGHTRPCQLEVTACFTNPTSYATACIQGDVATGLSSDQGAEM 291
           TESTMSSPCPGHTRPCQLEVTACFTNPTSYATACIQGDVATGLSSDQGAEM
Sbjct: 241 TESTMSSPCPGHTRPCQLEVTACFTNPTSYATACIQGDVATGLSSDQGAEM 291


>gi|239741208 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 291

 Score =  595 bits (1535), Expect = e-170
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
           MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ
Sbjct: 1   MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60

Query: 61  NCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAV 120
           NCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAV
Sbjct: 61  NCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAV 120

Query: 121 PSLPEHVDVCFGFLTSALPKVFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHC 180
           PSLPEHVDVCFGFLTSALPKVFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHC
Sbjct: 121 PSLPEHVDVCFGFLTSALPKVFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHC 180

Query: 181 LRAAVYALEGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCN 240
           LRAAVYALEGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCN
Sbjct: 181 LRAAVYALEGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCN 240

Query: 241 TESTMSSPCPGHTRPCQLEVTACFTNPTSYATACIQGDVATGLSSDQGAEM 291
           TESTMSSPCPGHTRPCQLEVTACFTNPTSYATACIQGDVATGLSSDQGAEM
Sbjct: 241 TESTMSSPCPGHTRPCQLEVTACFTNPTSYATACIQGDVATGLSSDQGAEM 291


>gi|169160855 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 321

 Score =  546 bits (1408), Expect = e-156
 Identities = 281/331 (84%), Positives = 281/331 (84%), Gaps = 50/331 (15%)

Query: 1   MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
           MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ
Sbjct: 1   MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60

Query: 61  NCPVDFEVLSEVLPLT----------------------------------------GSSR 80
           NCPVDFEVLSEVLPLT                                        GSSR
Sbjct: 61  NCPVDFEVLSEVLPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSR 120

Query: 81  EVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK 140
           EVMES          FFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK
Sbjct: 121 EVMES----------FFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK 170

Query: 141 VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR 200
           VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR
Sbjct: 171 VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR 230

Query: 201 PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV 260
           PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV
Sbjct: 231 PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV 290

Query: 261 TACFTNPTSYATACIQGDVATGLSSDQGAEM 291
           TACFTNPTSYATACIQGDVATGLSSDQGAEM
Sbjct: 291 TACFTNPTSYATACIQGDVATGLSSDQGAEM 321


>gi|239753196 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 406

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)

Query: 200 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 259
           RP     L+ SS   ++SS S  FS SG +S    +  +C+T +T       H +     
Sbjct: 11  RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56

Query: 260 VTACFTNPTSYATACIQGDVATGL 283
              CF    S +  C+ G +  GL
Sbjct: 57  ---CFLQSRSVSDTCVPGQILDGL 77


>gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo
           sapiens]
          Length = 406

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)

Query: 200 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 259
           RP     L+ SS   ++SS S  FS SG +S    +  +C+T +T       H +     
Sbjct: 11  RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56

Query: 260 VTACFTNPTSYATACIQGDVATGL 283
              CF    S +  C+ G +  GL
Sbjct: 57  ---CFLQSRSVSDTCVPGQILDGL 77


>gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo
           sapiens]
          Length = 406

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)

Query: 200 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 259
           RP     L+ SS   ++SS S  FS SG +S    +  +C+T +T       H +     
Sbjct: 11  RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56

Query: 260 VTACFTNPTSYATACIQGDVATGL 283
              CF    S +  C+ G +  GL
Sbjct: 57  ---CFLQSRSVSDTCVPGQILDGL 77


>gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 583

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 196 CRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSG 227
           CR  RP  +AW  R   L SSS SS   SF G
Sbjct: 94  CRSSRPSARAWASRRRTLISSSCSSPTTSFRG 125


>gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo
           sapiens]
          Length = 241

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 196 CRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSG 227
           CR  RP  +AW  R   L SSS SS   SF G
Sbjct: 94  CRSSRPSARAWASRRRTLISSSCSSPTTSFRG 125


>gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo
           sapiens]
          Length = 241

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 196 CRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSG 227
           CR  RP  +AW  R   L SSS SS   SF G
Sbjct: 94  CRSSRPSARAWASRRRTLISSSCSSPTTSFRG 125


>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
          Length = 255

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 174 GHQSVHCLRAAVYAL-EGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMM 232
           GH S+HCL +A ++  +G         RP    ++   S   SS   SS  S+ G  S+ 
Sbjct: 38  GHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLA 97

Query: 233 CLSLENCNTESTMSSPCPG 251
              LE+   +S  S+   G
Sbjct: 98  QSRLEDPGADSEKSTVVEG 116


>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
           sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 162 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 207
           ++AH+ S W P+   +V    A+ ++    RP  CR  R W   +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299


>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
           sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 162 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 207
           ++AH+ S W P+   +V    A+ ++    RP  CR  R W   +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299


>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
           sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 162 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 207
           ++AH+ S W P+   +V    A+ ++    RP  CR  R W   +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299


>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
           sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 162 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 207
           ++AH+ S W P+   +V    A+ ++    RP  CR  R W   +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299


>gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]
          Length = 4557

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 233  CLSLENCNTESTMSSPCPGHTRPCQLEVTACFTNPTSYATAC 274
            C  L +   + T  S   G  R C+ E+TACF NP     +C
Sbjct: 4036 CTGLPSGGYQCTCLSQFTG--RNCESEITACFPNPCRNGGSC 4075


>gi|223634006 hypothetical protein LOC441869 [Homo sapiens]
          Length = 399

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 12  VDGLEDDGATLLGDGPAVAH------VAAHQAGDGVEALHLELVLHAA--------VGLA 57
           VD  +  GAT LG   A+        +  H A  G+   H    LH A        V L 
Sbjct: 229 VDARDGAGATALGLAAALGRSQDIEVLLGHGADPGIRDRHGRSALHRAAARGHLLAVQLL 288

Query: 58  ESQNCPVDFEVLSEVLPLTGSSREVMESVNNCQLN 92
            +Q   VD      + PL  +SRE    V  C L+
Sbjct: 289 VTQGAEVDARDTLGLTPLHHASREGHVEVAGCLLD 323


>gi|224549033 zinc finger protein 529 isoform b [Homo sapiens]
          Length = 545

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 58  ESQNCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEF 96
           ES+N      V  +++  TGS  EVMES   C L G+ F
Sbjct: 63  ESRNETKHLSVGKDIIQNTGSQWEVMESSKLCGLEGSIF 101


>gi|224549030 zinc finger protein 529 isoform a [Homo sapiens]
          Length = 563

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 58  ESQNCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEF 96
           ES+N      V  +++  TGS  EVMES   C L G+ F
Sbjct: 81  ESRNETKHLSVGKDIIQNTGSQWEVMESSKLCGLEGSIF 119


>gi|224549028 zinc finger protein 529 isoform a [Homo sapiens]
          Length = 563

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 58  ESQNCPVDFEVLSEVLPLTGSSREVMESVNNCQLNGAEF 96
           ES+N      V  +++  TGS  EVMES   C L G+ F
Sbjct: 81  ESRNETKHLSVGKDIIQNTGSQWEVMESSKLCGLEGSIF 119


>gi|4758378 vascular endothelial growth factor D preproprotein [Homo
           sapiens]
          Length = 354

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 8/37 (21%)

Query: 235 SLENCNTESTMSSP--------CPGHTRPCQLEVTAC 263
           SLE C  +  +  P        CP HTRPC    TAC
Sbjct: 296 SLETCCQKHKLFHPDTCSCEDRCPFHTRPCASGKTAC 332


>gi|117190519 sialidase 3 [Homo sapiens]
          Length = 461

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 9/41 (21%)

Query: 77  GSSREVMESVNNCQLNGAEF---------FRLLTLWLLPPT 108
           GSS EVME V  C  N   F         +R+  L  +PPT
Sbjct: 28  GSSAEVMEEVTTCSFNSPLFRQEDDRGITYRIPALLYIPPT 68


>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
          Length = 3144

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 233  CLSLENC--NTESTMSSPCPGHTR-PCQLEVTACFTNPTSYATACIQG 277
            CL  ENC   T+       PG+T   C++ +  C + P  +   CI G
Sbjct: 975  CLDEENCVYRTDGYNCLCAPGYTGINCEINLDECLSEPCLHDGVCIDG 1022


>gi|187960100 ubiquitin protein ligase E3C [Homo sapiens]
          Length = 1083

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 203 YQAWLRRSSL----LRSSSSSSSFFSFSGVLSMMCLSLENCNTES 243
           YQ  ++ SSL    L  S   +  F    ++S+ C  L+NCN +S
Sbjct: 118 YQNLIKHSSLFVKQLDGSERLTCLFQIKRLMSLCCRLLQNCNDDS 162


>gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]
          Length = 4349

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 193  PGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGH 252
            P  CRG+RP     L    LL SSS+ S    F G L  + ++      E  +    PG 
Sbjct: 3879 PENCRGLRPERHLLLGGLILLHSSSNVSQ--GFEGCLDAVVVN------EEALDLLAPGK 3930

Query: 253  TRPCQLEVTA----CFTNPTSYATACIQG 277
            T    LE  A    C  +       C+ G
Sbjct: 3931 TVAGLLETQALTQCCLHSDYCSQNTCLNG 3959


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 22/58 (37%), Positives = 26/58 (44%)

Query: 210  SSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEVTACFTNP 267
            SS   SSSSSSS  S S   S    S  + ++ S+ SSP P    P  L   A    P
Sbjct: 2611 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP 2668


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,109,340
Number of Sequences: 37866
Number of extensions: 541024
Number of successful extensions: 1416
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 41
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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