Guide to the Human Genome
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Name: LOC100292795 Sequence: fasta or formatted (406aa) NCBI GI: 239753196
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         33           5
 C cysteine            4.2         17           1
 D aspartate           3.2         13           1
 E glutamate           3.2         13           2
 F phenylalanine       3.4         14           1
 G glycine             7.4         30           1
 H histidine           4.9         20           2
 I isoleucine          4.7         19           2
 K lysine              4.4         18           2
 L leucine            13.1         53           3
 M methionine          2.0          8           1
 N asparagine          1.5          6           1
 P proline             6.7         27           4
 Q glutamine           4.7         19           2
 R arginine            6.4         26           2
 S serine              9.6         39           3
 T threonine           5.4         22           2
 V valine              3.7         15           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291434          1.000   PREDICTED: hypothetical protein XP_002348262 
LOC100287788          1.000   PREDICTED: hypothetical protein XP_002342253 
AHDC1                 0.015   AT hook, DNA binding motif, containing 1 
LOC100129046          0.007   PREDICTED: hypothetical protein 
LOC100129046          0.007   PREDICTED: hypothetical protein 
LOC100129046          0.007   PREDICTED: hypothetical protein 
LOC729815             0.007   PREDICTED: hypothetical protein 
ZMIZ1                 0.007   retinoic acid induced 17 
LOC388559             0.006   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.006   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.006   PREDICTED: hypothetical protein LOC388559 
LOC729815             0.006   PREDICTED: hypothetical protein 
ZNF761                0.006   zinc finger protein 761 
HIVEP3                0.006   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.006   human immunodeficiency virus type I enhancer bindin...
OR52L1                0.006   olfactory receptor, family 52, subfamily L, member ...
ZNF71                 0.006   zinc finger protein 71 
JMJD1C                0.006   jumonji domain containing 1C isoform a 
JMJD1C                0.006   jumonji domain containing 1C isoform b 
LOC338758             0.006   PREDICTED: hypothetical protein 
LOC338758             0.006   PREDICTED: hypothetical protein 
LOC338758             0.006   PREDICTED: hypothetical protein 
TSHZ1                 0.006   teashirt family zinc finger 1 
GPR135                0.006   G protein-coupled receptor 135 
ZFP36L2               0.006   zinc finger protein 36, C3H type-like 2 
ZNF517                0.006   zinc finger protein 517 
LOC100134240          0.005   PREDICTED: hypothetical protein 
NKX6-1                0.005   NK6 transcription factor related, locus 1 
LRBA                  0.005   LPS-responsive vesicle trafficking, beach and ancho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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