Guide to the Human Genome
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Name: LOC100129046 Sequence: fasta or formatted (321aa) NCBI GI: 169160855
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {291aa} PREDICTED: hypothetical protein
alt prot {291aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         28           2
 C cysteine            3.4         11           1
 D aspartate           3.1         10           2
 E glutamate           5.9         19           1
 F phenylalanine       4.7         15           2
 G glycine             7.5         24           1
 H histidine           3.7         12           1
 I isoleucine          1.9          6           1
 K lysine              1.2          4           1
 L leucine            13.1         42           2
 M methionine          3.1         10           2
 N asparagine          1.9          6           1
 P proline             5.9         19           2
 Q glutamine           3.4         11           1
 R arginine            4.0         13           2
 S serine              9.7         31           7
 T threonine           7.2         23           2
 V valine              8.4         27           2
 W tryptophan          1.6          5           1
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129046          0.830   PREDICTED: hypothetical protein 
LOC100129046          0.830   PREDICTED: hypothetical protein 
LOC100292795          0.010   PREDICTED: hypothetical protein 
LOC100291434          0.010   PREDICTED: hypothetical protein XP_002348262 
LOC100287788          0.010   PREDICTED: hypothetical protein XP_002342253 
CPEB3                 0.008   cytoplasmic polyadenylation element binding protein ...
ATXN1                 0.008   ataxin 1 
ATXN1                 0.008   ataxin 1 
LOC100293070          0.008   PREDICTED: hypothetical protein 
LOC100291077          0.008   PREDICTED: hypothetical protein XP_002347941 
LOC100288221          0.008   PREDICTED: hypothetical protein XP_002344287 
DLX1                  0.008   distal-less homeobox 1 isoform 1 
LOC100293166          0.006   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.006   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.006   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.006   PREDICTED: similar to ribosomal protein L36a 
FAT3                  0.006   FAT tumor suppressor homolog 3 
SLC6A3                0.005   solute carrier family 6 (neurotransmitter transporter...
FIGF                  0.005   vascular endothelial growth factor D preproprotein [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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