Guide to the Human Genome
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Search of human proteins with 239509001

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]
         (241 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754702 PREDICTED: hypothetical protein [Homo sapiens]           487   e-138
gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo ...   487   e-138
gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo ...   487   e-138
gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]           487   e-138
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]            33   0.29 
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s...    33   0.29 
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]              33   0.29 
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]            32   0.38 
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]            32   0.38 
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]            32   0.38 
gi|13376339 plasticity-related protein 2 [Homo sapiens]                32   0.49 
gi|13027594 zinc finger protein 747 [Homo sapiens]                     32   0.49 
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]            32   0.64 
gi|203098098 shroom family member 3 protein [Homo sapiens]             32   0.64 
gi|225690497 tight junction associated protein 1 isoform b [Homo...    32   0.64 
gi|225690495 tight junction associated protein 1 isoform b [Homo...    32   0.64 
gi|225690493 tight junction associated protein 1 isoform b [Homo...    32   0.64 
gi|225690491 tight junction associated protein 1 isoform b [Homo...    32   0.64 
gi|225690489 tight junction associated protein 1 isoform a [Homo...    32   0.64 
gi|225690487 tight junction associated protein 1 isoform a [Homo...    32   0.64 
gi|20070384 phosphoglycerate mutase family member 5 [Homo sapiens]     32   0.64 
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ...    31   0.84 
gi|24308541 HtrA serine peptidase 4 precursor [Homo sapiens]           31   0.84 
gi|19718780 semaphorin 6B precursor [Homo sapiens]                     31   0.84 
gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo ...    31   1.1  
gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo ...    31   1.1  
gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo ...    31   1.1  
gi|171543850 RUN domain containing 1 [Homo sapiens]                    31   1.1  
gi|4757950 cell division cycle 25B isoform 2 [Homo sapiens]            30   1.4  
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo...    30   1.9  

>gi|239754702 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 241

 Score =  487 bits (1253), Expect = e-138
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
           MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60

Query: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
           IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120

Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
           LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180

Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
           VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240

Query: 241 R 241
           R
Sbjct: 241 R 241


>gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo
           sapiens]
          Length = 241

 Score =  487 bits (1253), Expect = e-138
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
           MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60

Query: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
           IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120

Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
           LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180

Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
           VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240

Query: 241 R 241
           R
Sbjct: 241 R 241


>gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo
           sapiens]
          Length = 241

 Score =  487 bits (1253), Expect = e-138
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
           MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60

Query: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
           IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120

Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
           LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180

Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
           VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240

Query: 241 R 241
           R
Sbjct: 241 R 241


>gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 241

 Score =  487 bits (1253), Expect = e-138
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
           MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60

Query: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
           IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120

Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
           LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180

Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
           VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240

Query: 241 R 241
           R
Sbjct: 241 R 241


>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 378

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
           + CQ L A  QR     A R    P     SP  P     A  A P     GPG G R  
Sbjct: 230 LSCQ-LHAARQRLQAAAAQRPQPAPAA---SPGAPGPSRPAARAQPAQRARGPGVGARLA 285

Query: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPA 103
                 +   A+   + P    GSEG R   P   +R   APA
Sbjct: 286 GVTRDGRGGPARDAARSPQAGPGSEGSR---PSSRKRGEAAPA 325


>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
           sapiens]
          Length = 378

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 1   MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
           + CQ L A  QR     A R    P     SP  P     A  A P     GPG G R  
Sbjct: 230 LSCQ-LHAARQRLQAAAAQRPQPAPAA---SPGAPGPSRPAARAQPAQRARGPGVGARLA 285

Query: 61  IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPA 103
                 +   A+   + P    GSEG R   P   +R   APA
Sbjct: 286 GVTRDGRGGPARDAARSPQAGPGSEGSR---PSSRKRGEAAPA 325


>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
          Length = 1729

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 22  SHRPGRFNLSPACPQSPATAPNAPPGT-HLGGPGAGQRSEIQVLGVKKQNAQVQFKVPAV 80
           S  P   N  PA P  PA A  + PG+ HL  P        Q+L  +   A      PAV
Sbjct: 275 SPAPSSENGGPASPGLPAEASGSGPGSPHLHPPDKSSPCHSQLLEAQTPEASQASPCPAV 334

Query: 81  STGS-------EGERHRP 91
           +  +       EG RH P
Sbjct: 335 TPSAPSAALPDEGSRHTP 352


>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 8   AGEQRELCGRAARGS----HRPGRFNLSPACPQSPATAPNAP-----PGTHLGGPGAGQR 58
           A  Q  LCGRA  G      RPG+    P   +    AP A      P TH  GP  G R
Sbjct: 100 AASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTH--GPAGGTR 157

Query: 59  SEIQVLGVKKQNAQVQFKVPAVSTGSEG 86
                   +K++       PA +  S+G
Sbjct: 158 GGNLDTDTQKEHCVTTETDPAYADSSQG 185


>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 8   AGEQRELCGRAARGS----HRPGRFNLSPACPQSPATAPNAP-----PGTHLGGPGAGQR 58
           A  Q  LCGRA  G      RPG+    P   +    AP A      P TH  GP  G R
Sbjct: 100 AASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTH--GPAGGTR 157

Query: 59  SEIQVLGVKKQNAQVQFKVPAVSTGSEG 86
                   +K++       PA +  S+G
Sbjct: 158 GGNLDTDTQKEHCVTTETDPAYADSSQG 185


>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 8   AGEQRELCGRAARGS----HRPGRFNLSPACPQSPATAPNAP-----PGTHLGGPGAGQR 58
           A  Q  LCGRA  G      RPG+    P   +    AP A      P TH  GP  G R
Sbjct: 100 AASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTH--GPAGGTR 157

Query: 59  SEIQVLGVKKQNAQVQFKVPAVSTGSEG 86
                   +K++       PA +  S+G
Sbjct: 158 GGNLDTDTQKEHCVTTETDPAYADSSQG 185


>gi|13376339 plasticity-related protein 2 [Homo sapiens]
          Length = 746

 Score = 32.0 bits (71), Expect = 0.49
 Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 24/170 (14%)

Query: 24  RPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVPAVSTG 83
           RPG   L P     P   P  PP  H+   GA   + +      K  A V+ K   ++  
Sbjct: 503 RPG---LGPRVILPPRAGP--PPLVHIPEEGAQTGAGLS----PKSGAGVRAKWLMMAEK 553

Query: 84  SEGERHRPPRILRRLAQAPA------HYQEMRSGSGDMENESQLVTPFSTNFI-LAPWTK 136
           S      PPR+L+ +A + A         E  S S    + SQ  +P   +   +     
Sbjct: 554 SGAAVANPPRLLQVIAMSKAPGAPGPKAAETASSSSASSDSSQYRSPSDRDSASIVTIDA 613

Query: 137 RIAGARVVMVLVSKAPWKKERDEKGALAGAPGG--------GERGGAAVP 178
                 VV +    APW+ +    GA A A GG        G RGGA  P
Sbjct: 614 HAPHHPVVHLSAGGAPWEWKAAGGGAKAEADGGYELGDLARGFRGGAKPP 663


>gi|13027594 zinc finger protein 747 [Homo sapiens]
          Length = 191

 Score = 32.0 bits (71), Expect = 0.49
 Identities = 41/129 (31%), Positives = 50/129 (38%), Gaps = 25/129 (19%)

Query: 5   GLLAGEQRELCGRAARGSH-RPGRFNLSPACPQSP--ATAPNAPPGTH--LGGPGAGQRS 59
           G L   QR L     R ++   G    SP C   P  +T P AP G    +GGPGAGQ +
Sbjct: 52  GCLRPAQRALYRDVMRETYGHLGALGESPTCLPGPCASTGPAAPLGAACGVGGPGAGQAA 111

Query: 60  EIQ--VLGVKKQNAQVQFKVPAVSTGSEGERHRP------PRILR-------RLAQAPAH 104
             Q  V  +  Q ++      A    S G R RP      PRI R       R  Q P  
Sbjct: 112 SSQRGVCVLLPQESEA-----ASRRSSPGWRRRPNCGIRLPRIRRWRSVRQKRTQQIPET 166

Query: 105 YQEMRSGSG 113
            +    G G
Sbjct: 167 RKRKDKGKG 175


>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 4   QGLLAGEQRELCGRAARGSHRPGR------FNLSPACPQSPATAPNAPPG-THLGGPG-A 55
           Q L AG     CGRAARG   PGR      +      PQSP   P AP     L GPG A
Sbjct: 74  QELRAGSS---CGRAARGFPEPGRGGKTQKWGGGTGTPQSP--GPCAPQALASLLGPGKA 128

Query: 56  GQRSEIQ 62
           G R+ +Q
Sbjct: 129 GCRTRLQ 135


>gi|203098098 shroom family member 3 protein [Homo sapiens]
          Length = 1996

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 28  FNLSPACPQSPATAPNAPPGTHLG--GPGAGQRSEIQVLGVKKQNAQVQFKV-------- 77
           FN +   P+ P  AP+ P  + LG  GPG G  S +Q     K +  V  KV        
Sbjct: 735 FNSTDPSPEEPP-APSHPHTSSLGRRGPGPGSASALQGFQYGKPHCSVLEKVSKFEQREQ 793

Query: 78  ----PAVSTGSEGERHRPPRILRRLAQAPAHYQEMRS 110
               P+V     G  +RP R +   + +   ++E ++
Sbjct: 794 GSQRPSVGGSGFGHNYRPHRTVSTSSTSGNDFEETKA 830


>gi|225690497 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 24  RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
           RP     +PA  Q SP   P+  P T L  P +   SE  +L V  Q A V    P  AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418

Query: 81  STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
           +  +   R   P + R  A +PA   E+         ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462


>gi|225690495 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 24  RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
           RP     +PA  Q SP   P+  P T L  P +   SE  +L V  Q A V    P  AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418

Query: 81  STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
           +  +   R   P + R  A +PA   E+         ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462


>gi|225690493 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 24  RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
           RP     +PA  Q SP   P+  P T L  P +   SE  +L V  Q A V    P  AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418

Query: 81  STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
           +  +   R   P + R  A +PA   E+         ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462


>gi|225690491 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 24  RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
           RP     +PA  Q SP   P+  P T L  P +   SE  +L V  Q A V    P  AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418

Query: 81  STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
           +  +   R   P + R  A +PA   E+         ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462


>gi|225690489 tight junction associated protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 24  RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
           RP     +PA  Q SP   P+  P T L  P +   SE  +L V  Q A V    P  AV
Sbjct: 371 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 428

Query: 81  STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
           +  +   R   P + R  A +PA   E+         ES+L+ P
Sbjct: 429 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 472


>gi|225690487 tight junction associated protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 24  RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
           RP     +PA  Q SP   P+  P T L  P +   SE  +L V  Q A V    P  AV
Sbjct: 371 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 428

Query: 81  STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
           +  +   R   P + R  A +PA   E+         ES+L+ P
Sbjct: 429 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 472


>gi|20070384 phosphoglycerate mutase family member 5 [Homo
          sapiens]
          Length = 255

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 5  GLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVL 64
          GL  G    L    A G  R G  +  P   + PA A  A PG  +  P   +R  + ++
Sbjct: 13 GLAGGSAAVLFSAVAVGKPRAGG-DAEPRPAEPPAWAGGARPGPGVWDPNWDRREPLSLI 71

Query: 65 GVKKQNAQ 72
           V+K+N +
Sbjct: 72 NVRKRNVE 79


>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
           sapiens]
          Length = 316

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 15  CGRAARGSHRPGR------FNLSPACPQSPATAPNAPPG-THLGGPG-AGQRSEIQ 62
           CGRAARG   PGR      +      PQSP   P AP     L GPG AG R+ +Q
Sbjct: 82  CGRAARGFPEPGRGGKTQEWGGGTGTPQSP--GPCAPQALASLLGPGKAGCRARLQ 135


>gi|24308541 HtrA serine peptidase 4 precursor [Homo sapiens]
          Length = 476

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 45/255 (17%)

Query: 2   KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEI 61
           +C  +    +RE+CG A      PG   L P  P  P+T      G  + G        +
Sbjct: 67  RCCRVCPAAEREVCGGAQGQPCAPGLQCLQPLRPGFPSTCGCPTLGGAVCGSDRRTYPSM 126

Query: 62  QVLGVKKQNAQVQFKVPAV-----STGSEGERHRPP---------RILRRLAQAPAHYQE 107
             L  + + A+   KVPAV     + G  G R   P          ++ ++A +  H Q 
Sbjct: 127 CALRAENRAARRLGKVPAVPVQWGNCGDTGTRSAGPLRRNYNFIAAVVEKVAPSVVHVQL 186

Query: 108 MRSGSGDMENESQLVTPFS-TNFILAPWTKRIAGARVV-------MVLVSKAPWK---KE 156
                G + + S+LV  +S + FI++     I  A VV       +VL + A ++   K+
Sbjct: 187 W----GRLLHGSRLVPVYSGSGFIVSEDGLIITNAHVVRNQQWIEVVLQNGARYEAVVKD 242

Query: 157 RDEKGALAGAPGGGERGGAAVPTMVFLSRNVVGGVARNMQGNEHLALLPIPFQLP----- 211
            D K  LA          A +P ++        G + +++  E +  L  PF L      
Sbjct: 243 IDLKLDLAVIK---IESNAELPVLML-------GRSSDLRAGEFVVALGSPFSLQNTATA 292

Query: 212 -VVGAQEKEGRKAGV 225
            +V  +++ G++ G+
Sbjct: 293 GIVSTKQRGGKELGM 307


>gi|19718780 semaphorin 6B precursor [Homo sapiens]
          Length = 888

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 165 GAPGGGERGGAAVPTMVFLSRNVVGGVARN--MQGNEH---LALLPIPFQLPV 212
           G  GGG  GGA VP    L+  +  G A+   +QG  H     LLP P Q P+
Sbjct: 663 GGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLLPTPEQTPL 715


>gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo
           sapiens]
          Length = 145

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 9   GEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK 68
           GE R    R A     P   + +   P  PA  P APPG    GPGA +RS    + ++ 
Sbjct: 29  GEVRRAVARLAA---LPSAHHTALHLPPVPAAPPTAPPGFQ-RGPGARKRSAPSAMLLEP 84

Query: 69  QN-----AQVQFKVPAVSTGSEGERHR-PPRI 94
            +     A +Q +      G+ G + R PPR+
Sbjct: 85  PHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRL 116


>gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo
           sapiens]
          Length = 145

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 9   GEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK 68
           GE R    R A     P   + +   P  PA  P APPG    GPGA +RS    + ++ 
Sbjct: 29  GEVRRAVARLAA---LPSAHHTALHLPPVPAAPPTAPPGFQ-RGPGARKRSAPSAMLLEP 84

Query: 69  QN-----AQVQFKVPAVSTGSEGERHR-PPRI 94
            +     A +Q +      G+ G + R PPR+
Sbjct: 85  PHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRL 116


>gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo
           sapiens]
          Length = 145

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 9   GEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK 68
           GE R    R A     P   + +   P  PA  P APPG    GPGA +RS    + ++ 
Sbjct: 29  GEVRRAVARLAA---LPSAHHTALHLPPVPAAPPTAPPGFQ-RGPGARKRSAPSAMLLEP 84

Query: 69  QN-----AQVQFKVPAVSTGSEGERHR-PPRI 94
            +     A +Q +      G+ G + R PPR+
Sbjct: 85  PHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRL 116


>gi|171543850 RUN domain containing 1 [Homo sapiens]
          Length = 613

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 24  RPGRFN-LSPACPQSPATAPNAPPGTHLGGPGAG--------QRSEIQVLGVKKQNAQVQ 74
           RPG    L  A  + P  AP +PP +    PG          +R +  +L +    AQVQ
Sbjct: 50  RPGATAFLEEATAEEPGAAPGSPPDS----PGRTLRRLRAERRRLDSALLALSSHFAQVQ 105

Query: 75  FKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGD 114
           F++  V  G+  E+ R  R L   A     +     G GD
Sbjct: 106 FRLRQVVRGAPAEQQRLLRELEDFAFRGCPHVLGYEGPGD 145


>gi|4757950 cell division cycle 25B isoform 2 [Homo sapiens]
          Length = 566

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 14  LCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGG-----PGAGQRSEIQVLGVKK 68
           +CG A R  H PG    S     SP  A  + P T L        G G RS +  L + +
Sbjct: 19  VCGGAQRPGHLPGLLLGSHGLLGSPVRAAASSPVTTLTQTMHDLAGLGSRSRLTHLSLSR 78

Query: 69  QNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTPFSTN 128
           + ++      +  +   G     P  +          Q +++ S  + NE   +  F + 
Sbjct: 79  RASESSLSSESSESSDAGLCMDSPSPMDPHMAEQTFEQAIQAASRIIRNEQFAIRRFQSM 138

Query: 129 FILAPWTKRIAGARVVM--VLVSKAPWKKERDEKGALAGAPGGGER 172
            +      R+ G   V+  +  S+AP  + + E G+ A +  G ++
Sbjct: 139 PV------RLLGHSPVLRNITNSQAPDGRRKSEAGSGAASSSGEDK 178


>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
            sapiens]
          Length = 1242

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 34   CPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK----------QNAQVQFKVPAVSTG 83
            C   PA  P  PP +H     A   + +   G+++          QN   +  +   +T 
Sbjct: 957  CSSEPAEPPGTPPASHSHLDAAPLPTVVYSKGLQRGSPAGAWDSDQNGNSKRALGDPATP 1016

Query: 84   SEGERHRPPRILRRLAQAPAH 104
            +EG R  PPR   RL+    H
Sbjct: 1017 TEGPRRPPPRPPCRLSMGRRH 1037


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,122,403
Number of Sequences: 37866
Number of extensions: 590333
Number of successful extensions: 3050
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2984
Number of HSP's gapped (non-prelim): 150
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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