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Search of human proteins with 239509001
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754702 PREDICTED: hypothetical protein [Homo sapiens] 487 e-138
gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo ... 487 e-138
gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo ... 487 e-138
gi|239509001 PREDICTED: hypothetical protein [Homo sapiens] 487 e-138
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 33 0.29
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 33 0.29
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|13376339 plasticity-related protein 2 [Homo sapiens] 32 0.49
gi|13027594 zinc finger protein 747 [Homo sapiens] 32 0.49
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 32 0.64
gi|203098098 shroom family member 3 protein [Homo sapiens] 32 0.64
gi|225690497 tight junction associated protein 1 isoform b [Homo... 32 0.64
gi|225690495 tight junction associated protein 1 isoform b [Homo... 32 0.64
gi|225690493 tight junction associated protein 1 isoform b [Homo... 32 0.64
gi|225690491 tight junction associated protein 1 isoform b [Homo... 32 0.64
gi|225690489 tight junction associated protein 1 isoform a [Homo... 32 0.64
gi|225690487 tight junction associated protein 1 isoform a [Homo... 32 0.64
gi|20070384 phosphoglycerate mutase family member 5 [Homo sapiens] 32 0.64
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 31 0.84
gi|24308541 HtrA serine peptidase 4 precursor [Homo sapiens] 31 0.84
gi|19718780 semaphorin 6B precursor [Homo sapiens] 31 0.84
gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo ... 31 1.1
gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo ... 31 1.1
gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo ... 31 1.1
gi|171543850 RUN domain containing 1 [Homo sapiens] 31 1.1
gi|4757950 cell division cycle 25B isoform 2 [Homo sapiens] 30 1.4
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 30 1.9
>gi|239754702 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 487 bits (1253), Expect = e-138
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
Query: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
Query: 241 R 241
R
Sbjct: 241 R 241
>gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo
sapiens]
Length = 241
Score = 487 bits (1253), Expect = e-138
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
Query: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
Query: 241 R 241
R
Sbjct: 241 R 241
>gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo
sapiens]
Length = 241
Score = 487 bits (1253), Expect = e-138
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
Query: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
Query: 241 R 241
R
Sbjct: 241 R 241
>gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 487 bits (1253), Expect = e-138
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE
Sbjct: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
Query: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ
Sbjct: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQ 120
Query: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM
Sbjct: 121 LVTPFSTNFILAPWTKRIAGARVVMVLVSKAPWKKERDEKGALAGAPGGGERGGAAVPTM 180
Query: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ
Sbjct: 181 VFLSRNVVGGVARNMQGNEHLALLPIPFQLPVVGAQEKEGRKAGVIASRRARPQRRPQQQ 240
Query: 241 R 241
R
Sbjct: 241 R 241
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 32.7 bits (73), Expect = 0.29
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
+ CQ L A QR A R P SP P A A P GPG G R
Sbjct: 230 LSCQ-LHAARQRLQAAAAQRPQPAPAA---SPGAPGPSRPAARAQPAQRARGPGVGARLA 285
Query: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPA 103
+ A+ + P GSEG R P +R APA
Sbjct: 286 GVTRDGRGGPARDAARSPQAGPGSEGSR---PSSRKRGEAAPA 325
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 32.7 bits (73), Expect = 0.29
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 1 MKCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSE 60
+ CQ L A QR A R P SP P A A P GPG G R
Sbjct: 230 LSCQ-LHAARQRLQAAAAQRPQPAPAA---SPGAPGPSRPAARAQPAQRARGPGVGARLA 285
Query: 61 IQVLGVKKQNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPA 103
+ A+ + P GSEG R P +R APA
Sbjct: 286 GVTRDGRGGPARDAARSPQAGPGSEGSR---PSSRKRGEAAPA 325
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 32.7 bits (73), Expect = 0.29
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 22 SHRPGRFNLSPACPQSPATAPNAPPGT-HLGGPGAGQRSEIQVLGVKKQNAQVQFKVPAV 80
S P N PA P PA A + PG+ HL P Q+L + A PAV
Sbjct: 275 SPAPSSENGGPASPGLPAEASGSGPGSPHLHPPDKSSPCHSQLLEAQTPEASQASPCPAV 334
Query: 81 STGS-------EGERHRP 91
+ + EG RH P
Sbjct: 335 TPSAPSAALPDEGSRHTP 352
>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.38
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 8 AGEQRELCGRAARGS----HRPGRFNLSPACPQSPATAPNAP-----PGTHLGGPGAGQR 58
A Q LCGRA G RPG+ P + AP A P TH GP G R
Sbjct: 100 AASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTH--GPAGGTR 157
Query: 59 SEIQVLGVKKQNAQVQFKVPAVSTGSEG 86
+K++ PA + S+G
Sbjct: 158 GGNLDTDTQKEHCVTTETDPAYADSSQG 185
>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.38
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 8 AGEQRELCGRAARGS----HRPGRFNLSPACPQSPATAPNAP-----PGTHLGGPGAGQR 58
A Q LCGRA G RPG+ P + AP A P TH GP G R
Sbjct: 100 AASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTH--GPAGGTR 157
Query: 59 SEIQVLGVKKQNAQVQFKVPAVSTGSEG 86
+K++ PA + S+G
Sbjct: 158 GGNLDTDTQKEHCVTTETDPAYADSSQG 185
>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.38
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 8 AGEQRELCGRAARGS----HRPGRFNLSPACPQSPATAPNAP-----PGTHLGGPGAGQR 58
A Q LCGRA G RPG+ P + AP A P TH GP G R
Sbjct: 100 AASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRAALLLPRPRTH--GPAGGTR 157
Query: 59 SEIQVLGVKKQNAQVQFKVPAVSTGSEG 86
+K++ PA + S+G
Sbjct: 158 GGNLDTDTQKEHCVTTETDPAYADSSQG 185
>gi|13376339 plasticity-related protein 2 [Homo sapiens]
Length = 746
Score = 32.0 bits (71), Expect = 0.49
Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 24 RPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVPAVSTG 83
RPG L P P P PP H+ GA + + K A V+ K ++
Sbjct: 503 RPG---LGPRVILPPRAGP--PPLVHIPEEGAQTGAGLS----PKSGAGVRAKWLMMAEK 553
Query: 84 SEGERHRPPRILRRLAQAPA------HYQEMRSGSGDMENESQLVTPFSTNFI-LAPWTK 136
S PPR+L+ +A + A E S S + SQ +P + +
Sbjct: 554 SGAAVANPPRLLQVIAMSKAPGAPGPKAAETASSSSASSDSSQYRSPSDRDSASIVTIDA 613
Query: 137 RIAGARVVMVLVSKAPWKKERDEKGALAGAPGG--------GERGGAAVP 178
VV + APW+ + GA A A GG G RGGA P
Sbjct: 614 HAPHHPVVHLSAGGAPWEWKAAGGGAKAEADGGYELGDLARGFRGGAKPP 663
>gi|13027594 zinc finger protein 747 [Homo sapiens]
Length = 191
Score = 32.0 bits (71), Expect = 0.49
Identities = 41/129 (31%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 5 GLLAGEQRELCGRAARGSH-RPGRFNLSPACPQSP--ATAPNAPPGTH--LGGPGAGQRS 59
G L QR L R ++ G SP C P +T P AP G +GGPGAGQ +
Sbjct: 52 GCLRPAQRALYRDVMRETYGHLGALGESPTCLPGPCASTGPAAPLGAACGVGGPGAGQAA 111
Query: 60 EIQ--VLGVKKQNAQVQFKVPAVSTGSEGERHRP------PRILR-------RLAQAPAH 104
Q V + Q ++ A S G R RP PRI R R Q P
Sbjct: 112 SSQRGVCVLLPQESEA-----ASRRSSPGWRRRPNCGIRLPRIRRWRSVRQKRTQQIPET 166
Query: 105 YQEMRSGSG 113
+ G G
Sbjct: 167 RKRKDKGKG 175
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 31.6 bits (70), Expect = 0.64
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 4 QGLLAGEQRELCGRAARGSHRPGR------FNLSPACPQSPATAPNAPPG-THLGGPG-A 55
Q L AG CGRAARG PGR + PQSP P AP L GPG A
Sbjct: 74 QELRAGSS---CGRAARGFPEPGRGGKTQKWGGGTGTPQSP--GPCAPQALASLLGPGKA 128
Query: 56 GQRSEIQ 62
G R+ +Q
Sbjct: 129 GCRTRLQ 135
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 31.6 bits (70), Expect = 0.64
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 28 FNLSPACPQSPATAPNAPPGTHLG--GPGAGQRSEIQVLGVKKQNAQVQFKV-------- 77
FN + P+ P AP+ P + LG GPG G S +Q K + V KV
Sbjct: 735 FNSTDPSPEEPP-APSHPHTSSLGRRGPGPGSASALQGFQYGKPHCSVLEKVSKFEQREQ 793
Query: 78 ----PAVSTGSEGERHRPPRILRRLAQAPAHYQEMRS 110
P+V G +RP R + + + ++E ++
Sbjct: 794 GSQRPSVGGSGFGHNYRPHRTVSTSSTSGNDFEETKA 830
>gi|225690497 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.64
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 24 RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
RP +PA Q SP P+ P T L P + SE +L V Q A V P AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418
Query: 81 STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
+ + R P + R A +PA E+ ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462
>gi|225690495 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.64
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 24 RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
RP +PA Q SP P+ P T L P + SE +L V Q A V P AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418
Query: 81 STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
+ + R P + R A +PA E+ ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462
>gi|225690493 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.64
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 24 RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
RP +PA Q SP P+ P T L P + SE +L V Q A V P AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418
Query: 81 STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
+ + R P + R A +PA E+ ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462
>gi|225690491 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.64
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 24 RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
RP +PA Q SP P+ P T L P + SE +L V Q A V P AV
Sbjct: 361 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 418
Query: 81 STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
+ + R P + R A +PA E+ ES+L+ P
Sbjct: 419 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 462
>gi|225690489 tight junction associated protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 31.6 bits (70), Expect = 0.64
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 24 RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
RP +PA Q SP P+ P T L P + SE +L V Q A V P AV
Sbjct: 371 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 428
Query: 81 STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
+ + R P + R A +PA E+ ES+L+ P
Sbjct: 429 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 472
>gi|225690487 tight junction associated protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 31.6 bits (70), Expect = 0.64
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 24 RPGRFNLSPACPQ-SPATAPNAPPGTHLGGPGAGQRSEIQVLGVKKQNAQVQFKVP--AV 80
RP +PA Q SP P+ P T L P + SE +L V Q A V P AV
Sbjct: 371 RPSPVPSTPASAQASPHHQPSPAPLT-LSAPASSASSEEDLL-VSWQRAFVDRTPPPAAV 428
Query: 81 STGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTP 124
+ + R P + R A +PA E+ ES+L+ P
Sbjct: 429 AQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLP 472
>gi|20070384 phosphoglycerate mutase family member 5 [Homo
sapiens]
Length = 255
Score = 31.6 bits (70), Expect = 0.64
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 5 GLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVL 64
GL G L A G R G + P + PA A A PG + P +R + ++
Sbjct: 13 GLAGGSAAVLFSAVAVGKPRAGG-DAEPRPAEPPAWAGGARPGPGVWDPNWDRREPLSLI 71
Query: 65 GVKKQNAQ 72
V+K+N +
Sbjct: 72 NVRKRNVE 79
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 31.2 bits (69), Expect = 0.84
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 15 CGRAARGSHRPGR------FNLSPACPQSPATAPNAPPG-THLGGPG-AGQRSEIQ 62
CGRAARG PGR + PQSP P AP L GPG AG R+ +Q
Sbjct: 82 CGRAARGFPEPGRGGKTQEWGGGTGTPQSP--GPCAPQALASLLGPGKAGCRARLQ 135
>gi|24308541 HtrA serine peptidase 4 precursor [Homo sapiens]
Length = 476
Score = 31.2 bits (69), Expect = 0.84
Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 45/255 (17%)
Query: 2 KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEI 61
+C + +RE+CG A PG L P P P+T G + G +
Sbjct: 67 RCCRVCPAAEREVCGGAQGQPCAPGLQCLQPLRPGFPSTCGCPTLGGAVCGSDRRTYPSM 126
Query: 62 QVLGVKKQNAQVQFKVPAV-----STGSEGERHRPP---------RILRRLAQAPAHYQE 107
L + + A+ KVPAV + G G R P ++ ++A + H Q
Sbjct: 127 CALRAENRAARRLGKVPAVPVQWGNCGDTGTRSAGPLRRNYNFIAAVVEKVAPSVVHVQL 186
Query: 108 MRSGSGDMENESQLVTPFS-TNFILAPWTKRIAGARVV-------MVLVSKAPWK---KE 156
G + + S+LV +S + FI++ I A VV +VL + A ++ K+
Sbjct: 187 W----GRLLHGSRLVPVYSGSGFIVSEDGLIITNAHVVRNQQWIEVVLQNGARYEAVVKD 242
Query: 157 RDEKGALAGAPGGGERGGAAVPTMVFLSRNVVGGVARNMQGNEHLALLPIPFQLP----- 211
D K LA A +P ++ G + +++ E + L PF L
Sbjct: 243 IDLKLDLAVIK---IESNAELPVLML-------GRSSDLRAGEFVVALGSPFSLQNTATA 292
Query: 212 -VVGAQEKEGRKAGV 225
+V +++ G++ G+
Sbjct: 293 GIVSTKQRGGKELGM 307
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 31.2 bits (69), Expect = 0.84
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 165 GAPGGGERGGAAVPTMVFLSRNVVGGVARN--MQGNEH---LALLPIPFQLPV 212
G GGG GGA VP L+ + G A+ +QG H LLP P Q P+
Sbjct: 663 GGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLLPTPEQTPL 715
>gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo
sapiens]
Length = 145
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 9 GEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK 68
GE R R A P + + P PA P APPG GPGA +RS + ++
Sbjct: 29 GEVRRAVARLAA---LPSAHHTALHLPPVPAAPPTAPPGFQ-RGPGARKRSAPSAMLLEP 84
Query: 69 QN-----AQVQFKVPAVSTGSEGERHR-PPRI 94
+ A +Q + G+ G + R PPR+
Sbjct: 85 PHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRL 116
>gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo
sapiens]
Length = 145
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 9 GEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK 68
GE R R A P + + P PA P APPG GPGA +RS + ++
Sbjct: 29 GEVRRAVARLAA---LPSAHHTALHLPPVPAAPPTAPPGFQ-RGPGARKRSAPSAMLLEP 84
Query: 69 QN-----AQVQFKVPAVSTGSEGERHR-PPRI 94
+ A +Q + G+ G + R PPR+
Sbjct: 85 PHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRL 116
>gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo
sapiens]
Length = 145
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 9 GEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK 68
GE R R A P + + P PA P APPG GPGA +RS + ++
Sbjct: 29 GEVRRAVARLAA---LPSAHHTALHLPPVPAAPPTAPPGFQ-RGPGARKRSAPSAMLLEP 84
Query: 69 QN-----AQVQFKVPAVSTGSEGERHR-PPRI 94
+ A +Q + G+ G + R PPR+
Sbjct: 85 PHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRL 116
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 24 RPGRFN-LSPACPQSPATAPNAPPGTHLGGPGAG--------QRSEIQVLGVKKQNAQVQ 74
RPG L A + P AP +PP + PG +R + +L + AQVQ
Sbjct: 50 RPGATAFLEEATAEEPGAAPGSPPDS----PGRTLRRLRAERRRLDSALLALSSHFAQVQ 105
Query: 75 FKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGD 114
F++ V G+ E+ R R L A + G GD
Sbjct: 106 FRLRQVVRGAPAEQQRLLRELEDFAFRGCPHVLGYEGPGD 145
>gi|4757950 cell division cycle 25B isoform 2 [Homo sapiens]
Length = 566
Score = 30.4 bits (67), Expect = 1.4
Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 13/166 (7%)
Query: 14 LCGRAARGSHRPGRFNLSPACPQSPATAPNAPPGTHLGG-----PGAGQRSEIQVLGVKK 68
+CG A R H PG S SP A + P T L G G RS + L + +
Sbjct: 19 VCGGAQRPGHLPGLLLGSHGLLGSPVRAAASSPVTTLTQTMHDLAGLGSRSRLTHLSLSR 78
Query: 69 QNAQVQFKVPAVSTGSEGERHRPPRILRRLAQAPAHYQEMRSGSGDMENESQLVTPFSTN 128
+ ++ + + G P + Q +++ S + NE + F +
Sbjct: 79 RASESSLSSESSESSDAGLCMDSPSPMDPHMAEQTFEQAIQAASRIIRNEQFAIRRFQSM 138
Query: 129 FILAPWTKRIAGARVVM--VLVSKAPWKKERDEKGALAGAPGGGER 172
+ R+ G V+ + S+AP + + E G+ A + G ++
Sbjct: 139 PV------RLLGHSPVLRNITNSQAPDGRRKSEAGSGAASSSGEDK 178
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 30.0 bits (66), Expect = 1.9
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 34 CPQSPATAPNAPPGTHLGGPGAGQRSEIQVLGVKK----------QNAQVQFKVPAVSTG 83
C PA P PP +H A + + G+++ QN + + +T
Sbjct: 957 CSSEPAEPPGTPPASHSHLDAAPLPTVVYSKGLQRGSPAGAWDSDQNGNSKRALGDPATP 1016
Query: 84 SEGERHRPPRILRRLAQAPAH 104
+EG R PPR RL+ H
Sbjct: 1017 TEGPRRPPPRPPCRLSMGRRH 1037
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,122,403
Number of Sequences: 37866
Number of extensions: 590333
Number of successful extensions: 3050
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2984
Number of HSP's gapped (non-prelim): 150
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.