Guide to the Human Genome
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Name: PGAM5 Sequence: fasta or formatted (255aa) NCBI GI: 20070384
Description:

phosphoglycerate mutase family member 5

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         30           2
 C cysteine            1.6          4           1
 D aspartate           5.1         13           1
 E glutamate           7.5         19           3
 F phenylalanine       2.7          7           1
 G glycine             7.8         20           2
 H histidine           3.5          9           1
 I isoleucine          5.9         15           2
 K lysine              3.9         10           1
 L leucine             9.0         23           2
 M methionine          0.8          2           1
 N asparagine          2.4          6           1
 P proline             7.1         18           2
 Q glutamine           2.4          6           1
 R arginine            8.2         21           2
 S serine              6.7         17           2
 T threonine           3.1          8           2
 V valine              6.3         16           2
 W tryptophan          1.6          4           1
 Y tyrosine            2.7          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphoglycerate mutase family member 5 
PFKFB4                0.022   6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4...
LOC100292172          0.014   PREDICTED: hypothetical protein 
LOC100289763          0.014   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.014   PREDICTED: hypothetical protein XP_002343623 
CHGB                  0.014   chromogranin B precursor 
LOC100292426          0.014   PREDICTED: hypothetical protein 
LOC100290287          0.014   PREDICTED: hypothetical protein XP_002346972 
LOC100287468          0.014   PREDICTED: hypothetical protein XP_002342822 
LOC100287468          0.014   PREDICTED: hypothetical protein 
C1orf229              0.014   hypothetical protein LOC388759 
TNRC18                0.014   trinucleotide repeat containing 18 
RPH3A                 0.014   rabphilin 3A homolog isoform 1 
RPH3A                 0.014   rabphilin 3A homolog isoform 2 
MBD3L3                0.012   PREDICTED: methyl-CpG-binding domain protein 3-like ...
MBD3L4                0.012   PREDICTED: methyl-CpG-binding domain protein 3-like ...
LOC729458             0.012   PREDICTED: similar to methyl-CpG binding domain pro...
FKBP8                 0.012   FK506-binding protein 8 
MYST1                 0.012   MYST histone acetyltransferase 1 isoform 2 
MYST1                 0.012   MYST histone acetyltransferase 1 isoform 1 
MBD3L5                0.012   hypothetical protein LOC284428 
MBD3L2                0.012   methyl-CpG binding domain protein 3-like 2 
LAT                   0.012   linker for activation of T cells isoform a 
LOC100134199          0.012   PREDICTED: similar to methyl-CpG binding domain pro...
TMCC2                 0.012   transmembrane and coiled-coil domain family 2 
TTC18                 0.010   tetratricopeptide repeat domain 18 
TAF4                  0.010   TBP-associated factor 4 
MLL2                  0.010   myeloid/lymphoid or mixed-lineage leukemia 2 
ARX                   0.010   aristaless related homeobox 
PDCD7                 0.010   programmed cell death 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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