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Search of human proteins with 237820711
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1
[Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Ho... 348 9e-97
gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3 [Ho... 159 1e-39
gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2 [Ho... 158 2e-39
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 55 3e-08
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 33 0.086
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 33 0.086
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 33 0.086
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 32 0.33
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 32 0.33
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 32 0.33
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 31 0.56
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 31 0.56
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 31 0.56
gi|6912274 brain-specific membrane-anchored protein precursor [H... 30 0.73
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 30 1.2
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 28 2.8
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 28 2.8
gi|9910544 CDC42 small effector 1 [Homo sapiens] 28 4.7
gi|84798620 CDC42 small effector 1 [Homo sapiens] 28 4.7
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 27 8.0
>gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Homo
sapiens]
Length = 165
Score = 348 bits (894), Expect = 9e-97
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVKIFPRFFMVAKQCSAGCAAMERPKPEEKRFLLEEPMPFFYLKCCKIRY 120
KWTEPYCVIAAVKIFPRFFMVAKQCSAGCAAMERPKPEEKRFLLEEPMPFFYLKCCKIRY
Sbjct: 61 KWTEPYCVIAAVKIFPRFFMVAKQCSAGCAAMERPKPEEKRFLLEEPMPFFYLKCCKIRY 120
Query: 121 CNLEGPPINSSVFKEYAGSMGESCGGLWLAILLLLASIAAGLSLS 165
CNLEGPPINSSVFKEYAGSMGESCGGLWLAILLLLASIAAGLSLS
Sbjct: 121 CNLEGPPINSSVFKEYAGSMGESCGGLWLAILLLLASIAAGLSLS 165
>gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3
[Homo sapiens]
Length = 105
Score = 159 bits (401), Expect = 1e-39
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVKI 74
KWTEPYCVIAAV +
Sbjct: 61 KWTEPYCVIAAVTV 74
>gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2
[Homo sapiens]
Length = 120
Score = 158 bits (399), Expect = 2e-39
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAV 72
KWTEPYCVIAAV
Sbjct: 61 KWTEPYCVIAAV 72
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 55.1 bits (131), Expect = 3e-08
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
M L ALLL + LP V A + A + + CH C N F C N R C
Sbjct: 1 MLLFALLLAMELPLVAASATMRA------------QWTYSLRCHDCAVINDFNCPNIRVC 48
Query: 61 KWTEPYCVIAAVKIFPRFFMVAKQCSAGC----AAMERPKPEEKRFLLEEPMPFFYLKCC 116
+ C+ +++I R +V K C+ C AA + P+ K F + F+++ CC
Sbjct: 49 PYHIRRCMTISIRINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIF---KTNSFYWVCCC 105
Query: 117 KIRYCNLEGP 126
CN GP
Sbjct: 106 NSMVCNAGGP 115
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 33.5 bits (75), Expect = 0.086
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVKIFPRFFMVAKQCSAGC 89
CHVC N C NP RC YC+ P V+K C C
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKSCVPRC 68
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 33.5 bits (75), Expect = 0.086
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVKIFPRFFMVAKQCSAGC 89
CHVC N C NP RC YC+ P V+K C C
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKSCVPRC 68
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 33.5 bits (75), Expect = 0.086
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVKIFPRFFMVAKQCSAGC 89
CHVC N C NP RC YC+ P V+K C C
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKSCVPRC 68
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 31.6 bits (70), Expect = 0.33
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 29/125 (23%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVKIFPRFFMVAKQCSAGCAAMERPKPEEKRF 102
CHVC C++ C T+ YCVI P +V K CS C + R
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRA-TSPGGILVMKSCSPTCP--NSTVSSDSRA 77
Query: 103 LLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGSMGESCGGLWLAIL-----LLLAS 157
L + CC+ CN + A + S G LW +I LL
Sbjct: 78 L--------SVSCCQGSQCN-----------RSAAAGLVGSPGTLWASIAASQLWALLQG 118
Query: 158 IAAGL 162
IA G+
Sbjct: 119 IADGM 123
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 31.6 bits (70), Expect = 0.33
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 29/125 (23%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVKIFPRFFMVAKQCSAGCAAMERPKPEEKRF 102
CHVC C++ C T+ YCVI P +V K CS C + R
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRA-TSPGGILVMKSCSPTCP--NSTVSSDSRA 77
Query: 103 LLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGSMGESCGGLWLAIL-----LLLAS 157
L + CC+ CN + A + S G LW +I LL
Sbjct: 78 L--------SVSCCQGSQCN-----------RSAAAGLVGSPGTLWASIAASQLWALLQG 118
Query: 158 IAAGL 162
IA G+
Sbjct: 119 IADGM 123
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 31.6 bits (70), Expect = 0.33
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 29/125 (23%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVKIFPRFFMVAKQCSAGCAAMERPKPEEKRF 102
CHVC C++ C T+ YCVI P +V K CS C + R
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRA-TSPGGILVMKSCSPTCP--NSTVSSDSRA 77
Query: 103 LLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGSMGESCGGLWLAIL-----LLLAS 157
L + CC+ CN + A + S G LW +I LL
Sbjct: 78 L--------SVSCCQGSQCN-----------RSAAAGLVGSPGTLWASIAASQLWALLQG 118
Query: 158 IAAGL 162
IA G+
Sbjct: 119 IADGM 123
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 958 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 995
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 983 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 1020
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 983 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 1020
>gi|6912274 brain-specific membrane-anchored protein precursor [Homo
sapiens]
Length = 342
Score = 30.4 bits (67), Expect = 0.73
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 18 DANLTARQRD--PEDSQRTDEG------DNRVWCHVCERENTFECQNPRRCKW------- 62
+ L R RD P+ SQ EG D V CER C+ C++
Sbjct: 41 NCQLRCRDRDLGPQPSQAGLEGASESPYDRAVLISACERG----CRLFSICRFVARSSKP 96
Query: 63 --TEPYCVIAAVKIFPRFFMVAKQCSAGCAAME-RPKPEEKRFLLEEP 107
T+ C A V+ + + + CS GC + P+PE+KR +LE P
Sbjct: 97 NATQTECEAACVEAYVKE-AEQQACSHGCWSQPAEPEPEQKRKVLEAP 143
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 43 CHVC-ERENTFECQNPRRCKWTEPYCVIAAVK---IFPRFFMVAKQCSAGCAAMERPKPE 98
C+VC E +C C E C ++P F + CA+ +P
Sbjct: 25 CYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYP--FQGDSTVTKSCASKCKPSDV 82
Query: 99 EKRFLLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGSMGESCGGLWLAILLLL 155
+ + + +P + CC CN++G P +S+ CG L L LL L
Sbjct: 83 DG---IGQTLP---VSCCNTELCNVDGAPALNSL----------HCGALTLLPLLSL 123
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 80 MVAKQCSAGCAAMERPKPEEKRFLLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGS 139
M A+ C C K EKR L + L+ ++C+LE + ++Y G+
Sbjct: 55 MAAEHCQVTCKCN---KKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGA 111
Query: 140 MGESCGGLWLAILL 153
E CG +L+
Sbjct: 112 RTELCGNCGRNVLV 125
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 80 MVAKQCSAGCAAMERPKPEEKRFLLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGS 139
M A+ C C K EKR L + L+ ++C+LE + ++Y G+
Sbjct: 55 MAAEHCQVTCKCN---KKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGA 111
Query: 140 MGESCGGLWLAILL 153
E CG +L+
Sbjct: 112 RTELCGNCGRNVLV 125
>gi|9910544 CDC42 small effector 1 [Homo sapiens]
Length = 79
Score = 27.7 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 88 GCAAMERPKPEEK-----RFLLEEPMPFFYL 113
GC +E+P+P++K R ++ EPM F +L
Sbjct: 9 GCCVVEKPQPKKKRRRIDRTMIGEPMNFVHL 39
>gi|84798620 CDC42 small effector 1 [Homo sapiens]
Length = 79
Score = 27.7 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 88 GCAAMERPKPEEK-----RFLLEEPMPFFYL 113
GC +E+P+P++K R ++ EPM F +L
Sbjct: 9 GCCVVEKPQPKKKRRRIDRTMIGEPMNFVHL 39
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 27 DPEDSQRTDEGDNRVWC--HVCERENTFECQNPRRCKWTEPYC 67
D ED + +N C VC F C+N R C W C
Sbjct: 3674 DGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQC 3716
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,225,703
Number of Sequences: 37866
Number of extensions: 355295
Number of successful extensions: 877
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 24
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.