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Search of human proteins with 23238219
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo
sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 670 0.0
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 335 5e-92
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 184 1e-46
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 97 2e-20
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 97 2e-20
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 97 2e-20
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 94 1e-19
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 79 8e-15
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 79 8e-15
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 79 8e-15
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 53 3e-07
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 48 1e-05
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 47 2e-05
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 34 0.21
gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Hom... 33 0.28
gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Hom... 33 0.28
gi|83716024 kinesin family member 21B [Homo sapiens] 32 0.82
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 30 2.4
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 30 2.4
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 30 2.4
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 30 2.4
gi|38569484 kinesin family member 21A [Homo sapiens] 30 3.1
gi|7662022 lipin 2 [Homo sapiens] 30 4.0
gi|223972685 IQ motif and ubiquitin domain containing [Homo sapi... 29 5.3
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 670 bits (1728), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC 60
MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
Sbjct: 1 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC 60
Query: 61 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA 120
NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA
Sbjct: 61 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMA 120
Query: 121 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD 180
ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD
Sbjct: 121 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD 180
Query: 181 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA 240
HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA
Sbjct: 181 HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELA 240
Query: 241 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR 300
ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR
Sbjct: 241 ERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTR 300
Query: 301 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE 340
ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
Sbjct: 301 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE 340
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 335 bits (858), Expect = 5e-92
Identities = 176/326 (53%), Positives = 227/326 (69%), Gaps = 3/326 (0%)
Query: 16 EEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 74
EEES Q I L++ GIN D+KKL+ G T++ + ++ L N+KG+SEAK DKI
Sbjct: 16 EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75
Query: 75 EAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 134
A KL+ GF TA E+ ++R + ITTGS+E DKLL GGIE+ +ITE FGEFRTGKTQ
Sbjct: 76 AEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 135
Query: 135 LSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 194
+ HTL VT QLP G GK ++IDTE TFRP+RL +A+R+ + VLDNV YARA+
Sbjct: 136 ICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 195
Query: 195 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ 254
++HQ +LL +A E + LLI+DS AL+R D+SGRGEL+ RQ LA+ L L
Sbjct: 196 NTDHQTQLLYQASAMMVESR--YALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 253
Query: 255 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAK 314
++++E+ VAV +TNQ+ A F ADPKKPIGG+I+AHASTTR+ LRKGRGE RI K
Sbjct: 254 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICK 313
Query: 315 IYDSPEMPENEATFAITAGGIGDAKE 340
IYDSP +PE EA FAI A G+GDAK+
Sbjct: 314 IYDSPCLPEAEAMFAINADGVGDAKD 339
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 184 bits (466), Expect = 1e-46
Identities = 96/189 (50%), Positives = 130/189 (68%), Gaps = 2/189 (1%)
Query: 152 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFH 211
P ++I I + + D++ +A+R+ + VLDNV YARA+ ++HQ +LL +A
Sbjct: 56 PKKELINIKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMV 115
Query: 212 EEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 271
E + LLI+DS AL+R D+SGRGEL+ RQ LA+ L L ++++E+ VAV +TNQ+
Sbjct: 116 ESR--YALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 173
Query: 272 ADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAIT 331
A F ADPKKPIGG+I+AHASTTR+ LRKGRGE RI KIYDSP +PE EA FAI
Sbjct: 174 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 233
Query: 332 AGGIGDAKE 340
A G+GDAK+
Sbjct: 234 ADGVGDAKD 242
Score = 53.1 bits (126), Expect = 3e-07
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 16 EEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 74
EEES Q I L++ GIN D+KKL+ G T++ + ++ L N+KG+SEAK DKI
Sbjct: 16 EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75
Query: 75 EAANK 79
A +
Sbjct: 76 VMAER 80
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 97.4 bits (241), Expect = 2e-20
Identities = 90/341 (26%), Positives = 148/341 (43%), Gaps = 45/341 (13%)
Query: 38 KKLKSVG-------------ICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPG 84
KKLK VG I T + + L V GLS V ++ ++ P
Sbjct: 4 KKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPK 63
Query: 85 FLTAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 141
TA+ +R F ++T D+ L GG+ ++TE G GKTQ + +
Sbjct: 64 MQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
Query: 142 TAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR-----FNVDHDAVL--DNVLYARAY 194
A LP G G +++IDTE+ F +RL +IA+ FN + +L V R
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYREL 183
Query: 195 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSR 252
T + ++ ++ + + + KL+I+DS+ ++ R +F +G L ER + LA+ S
Sbjct: 184 TCDEVLQRIESLEEEIISKG--IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
Query: 253 LQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIG------------------GHILA 294
L+ ++EE+++ V +TNQ+T + QAD P G+ +
Sbjct: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
Query: 295 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335
H+ TR+ L+ E R I SP P + I G+
Sbjct: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 97.4 bits (241), Expect = 2e-20
Identities = 90/341 (26%), Positives = 148/341 (43%), Gaps = 45/341 (13%)
Query: 38 KKLKSVG-------------ICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPG 84
KKLK VG I T + + L V GLS V ++ ++ P
Sbjct: 4 KKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPK 63
Query: 85 FLTAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 141
TA+ +R F ++T D+ L GG+ ++TE G GKTQ + +
Sbjct: 64 MQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
Query: 142 TAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR-----FNVDHDAVL--DNVLYARAY 194
A LP G G +++IDTE+ F +RL +IA+ FN + +L V R
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYREL 183
Query: 195 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSR 252
T + ++ ++ + + + KL+I+DS+ ++ R +F +G L ER + LA+ S
Sbjct: 184 TCDEVLQRIESLEEEIISKG--IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
Query: 253 LQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIG------------------GHILA 294
L+ ++EE+++ V +TNQ+T + QAD P G+ +
Sbjct: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
Query: 295 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335
H+ TR+ L+ E R I SP P + I G+
Sbjct: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 97.4 bits (241), Expect = 2e-20
Identities = 90/341 (26%), Positives = 148/341 (43%), Gaps = 45/341 (13%)
Query: 38 KKLKSVG-------------ICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPG 84
KKLK VG I T + + L V GLS V ++ ++ P
Sbjct: 4 KKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPK 63
Query: 85 FLTAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 141
TA+ +R F ++T D+ L GG+ ++TE G GKTQ + +
Sbjct: 64 MQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
Query: 142 TAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR-----FNVDHDAVL--DNVLYARAY 194
A LP G G +++IDTE+ F +RL +IA+ FN + +L V R
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYREL 183
Query: 195 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSR 252
T + ++ ++ + + + KL+I+DS+ ++ R +F +G L ER + LA+ S
Sbjct: 184 TCDEVLQRIESLEEEIISKG--IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
Query: 253 LQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIG------------------GHILA 294
L+ ++EE+++ V +TNQ+T + QAD P G+ +
Sbjct: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
Query: 295 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335
H+ TR+ L+ E R I SP P + I G+
Sbjct: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 94.4 bits (233), Expect = 1e-19
Identities = 97/347 (27%), Positives = 143/347 (41%), Gaps = 50/347 (14%)
Query: 12 GFQDEEESL-FQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV 70
GFQ EE L + +L ++ GI+ A+ ++ +Q+ R L N + +
Sbjct: 31 GFQTAEELLEVKPSELSKEVGISKAE----------ALETLQIIRRECLTN-----KPRY 75
Query: 71 DKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRT 130
E+ K TA E E+ I T D +LGGG+ M TE G
Sbjct: 76 AGTSESHKKC------TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGV 129
Query: 131 GKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA---------------- 174
GKTQL L V Q+P G G+ +FIDTE +F DR+ D+A
Sbjct: 130 GKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKG 189
Query: 175 -DRFNVDHDAVLDNVL-YARAYTSEHQMELLD--YVAAKFHEEAGIFKLLIIDSIMALFR 230
+ D LDN+L + + ELL Y+ F E +L+I+D I FR
Sbjct: 190 EEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFR 249
Query: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGG 290
D +L+ R + L + ++ ++ + +AV +TNQMT P G
Sbjct: 250 HDLD---DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALG 302
Query: 291 HILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 337
HA+T R+ R + R+A +Y SP E F I G D
Sbjct: 303 ESWGHAATIRLIFHWDRKQ-RLATLYKSPSQKECTVLFQIKPQGFRD 348
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 78.6 bits (192), Expect = 8e-15
Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 31/340 (9%)
Query: 23 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV-DKIKEAANKLI 81
D+DLL + +A IKK K + ++K + + L + LS +V ++ A+ L
Sbjct: 2 DLDLLDLNPRIIAAIKKAK---LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLR 58
Query: 82 EPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 137
LTA + ++++ ++ G D LL GG+ ITE G GKTQL+
Sbjct: 59 GSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLAL 118
Query: 138 TLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI---ADRFNVD-HDAVLDNVLYARA 193
LC+ Q P G ++I TE+ F RL+ + R D +L + +
Sbjct: 119 QLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQ 178
Query: 194 YTSEHQME---LLDYVAAKFHE--EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 248
EH + LL+ V K G+ +L++IDS+ A FR +F + A R + L
Sbjct: 179 IFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQS 237
Query: 249 MLSRLQKISEEYNVAVFVTNQMT---ADPGAT---MTFQADPKKPIGGHILAHASTTRIS 302
+ + L+++S + V NQ+T + GA + F + P G A+ R+
Sbjct: 238 LGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLL 297
Query: 303 LRKGRGE-------LRIAKIYDSPEMPENEATFAITAGGI 335
+ R E R ++ +P +P + ++ I+A G+
Sbjct: 298 ADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 78.6 bits (192), Expect = 8e-15
Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 31/340 (9%)
Query: 23 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV-DKIKEAANKLI 81
D+DLL + +A IKK K + ++K + + L + LS +V ++ A+ L
Sbjct: 2 DLDLLDLNPRIIAAIKKAK---LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLR 58
Query: 82 EPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 137
LTA + ++++ ++ G D LL GG+ ITE G GKTQL+
Sbjct: 59 GSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLAL 118
Query: 138 TLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI---ADRFNVD-HDAVLDNVLYARA 193
LC+ Q P G ++I TE+ F RL+ + R D +L + +
Sbjct: 119 QLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQ 178
Query: 194 YTSEHQME---LLDYVAAKFHE--EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 248
EH + LL+ V K G+ +L++IDS+ A FR +F + A R + L
Sbjct: 179 IFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQS 237
Query: 249 MLSRLQKISEEYNVAVFVTNQMT---ADPGAT---MTFQADPKKPIGGHILAHASTTRIS 302
+ + L+++S + V NQ+T + GA + F + P G A+ R+
Sbjct: 238 LGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLL 297
Query: 303 LRKGRGE-------LRIAKIYDSPEMPENEATFAITAGGI 335
+ R E R ++ +P +P + ++ I+A G+
Sbjct: 298 ADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 78.6 bits (192), Expect = 8e-15
Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 31/340 (9%)
Query: 23 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV-DKIKEAANKLI 81
D+DLL + +A IKK K + ++K + + L + LS +V ++ A+ L
Sbjct: 2 DLDLLDLNPRIIAAIKKAK---LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLR 58
Query: 82 EPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 137
LTA + ++++ ++ G D LL GG+ ITE G GKTQL+
Sbjct: 59 GSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLAL 118
Query: 138 TLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI---ADRFNVD-HDAVLDNVLYARA 193
LC+ Q P G ++I TE+ F RL+ + R D +L + +
Sbjct: 119 QLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQ 178
Query: 194 YTSEHQME---LLDYVAAKFHE--EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 248
EH + LL+ V K G+ +L++IDS+ A FR +F + A R + L
Sbjct: 179 IFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQS 237
Query: 249 MLSRLQKISEEYNVAVFVTNQMT---ADPGAT---MTFQADPKKPIGGHILAHASTTRIS 302
+ + L+++S + V NQ+T + GA + F + P G A+ R+
Sbjct: 238 LGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLL 297
Query: 303 LRKGRGE-------LRIAKIYDSPEMPENEATFAITAGGI 335
+ R E R ++ +P +P + ++ I+A G+
Sbjct: 298 ADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 53.1 bits (126), Expect = 3e-07
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 20/220 (9%)
Query: 91 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG 150
Y E + ++TG DKLL G+ + +TE G +GKTQ+ LC+ A + A G
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV--CLCMAANV--AHG 127
Query: 151 YPGGKIIFIDTENTFRPDRLRDIADRFNVDHD---AVLDNVLYARAYTSEHQMELLD--- 204
++++D+ RL + D + L + A+ +++L
Sbjct: 128 LQ-QNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
Query: 205 -YVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 263
VA + +G K++++DS+ A+ V G+ E + Q+ L+ ++ + +A
Sbjct: 187 GTVAQQVTGSSGTVKVVVVDSVTAV--VSPLLGGQQREGLALMMQLARELKTLARDLGMA 244
Query: 264 VFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISL 303
V VTN +T D + KP G + +TRI L
Sbjct: 245 VVVTNHITRDR------DSGRLKPALGRSWSFVPSTRILL 278
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 20/206 (9%)
Query: 105 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 164
+ DKLL G+ + +TE G +GKTQ+ LC+ A + A G ++++D+
Sbjct: 106 TSRLDKLLDAGLYTGEVTEIVGGPGSGKTQV--CLCMAANV--AHGLQ-QNVLYVDSNGG 160
Query: 165 FRPDRLRDIADRFNVDHD---AVLDNVLYARAYTSEHQMELLD----YVAAKFHEEAGIF 217
RL + D + L + A+ +++L VA + +G
Sbjct: 161 LTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTV 220
Query: 218 KLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAT 277
K++++DS+ A+ V G+ E + Q+ L+ ++ + +AV VTN +T D
Sbjct: 221 KVVVVDSVTAV--VSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDR--- 275
Query: 278 MTFQADPKKPIGGHILAHASTTRISL 303
+ KP G + +TRI L
Sbjct: 276 ---DSGRLKPALGRSWSFVPSTRILL 298
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 121 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD-RFNV 179
I E G TGKT++ + L LP + G +++FIDT+ F RL I + R +
Sbjct: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQ 102
Query: 180 DHDAV----LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 235
+ + L +S H + L + + F + LLI+DS+ A + +D
Sbjct: 103 SSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLC-LLILDSLSAFYWIDRVN 161
Query: 236 RGELAERQQKLAQMLSR-LQKISEEYNVAVFVTNQ 269
GE Q+ + S+ L+K+ +Y + +F T Q
Sbjct: 162 GGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQ 196
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 33.9 bits (76), Expect = 0.21
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 22/125 (17%)
Query: 12 GFQDEEESL-FQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV 70
GFQ EE L + +L ++ GI+ A+ ++ +Q+ R L N + +
Sbjct: 31 GFQTAEELLEVKPSELSKEVGISKAE----------ALETLQIIRRECLTN-----KPRY 75
Query: 71 DKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRT 130
E+ K TA E E+ I T D +LGGG+ M TE G
Sbjct: 76 AGTSESHKKC------TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGV 129
Query: 131 GKTQL 135
GKTQL
Sbjct: 130 GKTQL 134
>gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Homo
sapiens]
Length = 1151
Score = 33.5 bits (75), Expect = 0.28
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 108 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGK 155
F L GGG +S+ E FGE +GK S + +PG GG G K
Sbjct: 1048 FKGLFGGGAQSLDREELFGESSSGKASRS----LAQHIPGPGGIEGVK 1091
>gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Homo
sapiens]
Length = 1115
Score = 33.5 bits (75), Expect = 0.28
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 108 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGK 155
F L GGG +S+ E FGE +GK S + +PG GG G K
Sbjct: 1012 FKGLFGGGAQSLDREELFGESSSGKASRS----LAQHIPGPGGIEGVK 1055
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 32.0 bits (71), Expect = 0.82
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 158 FIDTENTFR-PDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAK 209
F++T NT + +R R+I ++ V+ D + RA + QMEL++Y A K
Sbjct: 354 FMETLNTLKYANRARNIKNKVVVNQDKTSQQISALRAEIARLQMELMEYKAGK 406
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 30.4 bits (67), Expect = 2.4
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 5 QVVAEEPGFQDEEESLFQDIDLLQKH----GINVADIKKLKSVGICTIKGIQMTTRRALC 60
Q+ E QD+ + + L++H I ++D KK T++ ++ +R
Sbjct: 1340 QLEEERNSLQDQLDEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQK 1399
Query: 61 NVKGLSE------AKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLL 112
++ L++ A DK+++ N+L + + +R++V ++ ++FD+LL
Sbjct: 1400 EIENLTQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLL 1457
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 30.4 bits (67), Expect = 2.4
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 5 QVVAEEPGFQDEEESLFQDIDLLQKH----GINVADIKKLKSVGICTIKGIQMTTRRALC 60
Q+ E QD+ + + L++H I ++D KK T++ ++ +R
Sbjct: 1347 QLEEERNSLQDQLDEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQK 1406
Query: 61 NVKGLSE------AKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLL 112
++ L++ A DK+++ N+L + + +R++V ++ ++FD+LL
Sbjct: 1407 EIENLTQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLL 1464
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 30.4 bits (67), Expect = 2.4
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 5 QVVAEEPGFQDEEESLFQDIDLLQKH----GINVADIKKLKSVGICTIKGIQMTTRRALC 60
Q+ E QD+ + + L++H I ++D KK T++ ++ +R
Sbjct: 1347 QLEEERNSLQDQLDEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQK 1406
Query: 61 NVKGLSE------AKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLL 112
++ L++ A DK+++ N+L + + +R++V ++ ++FD+LL
Sbjct: 1407 EIENLTQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLL 1464
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 30.4 bits (67), Expect = 2.4
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 5 QVVAEEPGFQDEEESLFQDIDLLQKH----GINVADIKKLKSVGICTIKGIQMTTRRALC 60
Q+ E QD+ + + L++H I ++D KK T++ ++ +R
Sbjct: 1340 QLEEERNSLQDQLDEEMEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQK 1399
Query: 61 NVKGLSE------AKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLL 112
++ L++ A DK+++ N+L + + +R++V ++ ++FD+LL
Sbjct: 1400 EIENLTQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLL 1457
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 30.0 bits (66), Expect = 3.1
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 158 FIDTENTFR-PDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAK-FHEEAG 215
F++T NT + +R R+I ++ V+ D + R+ + QMEL++Y K +E G
Sbjct: 355 FMETLNTLKYANRARNIKNKVMVNQDRASQQINALRSEITRLQMELMEYKTGKRIIDEEG 414
Query: 216 IFKLLIIDSIMALFRVDFSG-RGELAERQQKLAQMLSRL-QKISEEYN 261
+ + + A+ + + + R + Q+ + + SR+ Q +S++ N
Sbjct: 415 VESINDMFHENAMLQTENNNLRVRIKAMQETVDALRSRITQLVSDQAN 462
>gi|7662022 lipin 2 [Homo sapiens]
Length = 896
Score = 29.6 bits (65), Expect = 4.0
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 251 SRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTT--RISLRKGRG 308
S L S+E A N ++D G+ ++ PI L+H STT + SLR
Sbjct: 585 SDLPSSSKEPAGARPAENDSSSDEGSQELEESITVDPIPTEPLSHGSTTSYKKSLRLSSD 644
Query: 309 ELRIAKIYDSPEMPENEATFAIT 331
++ K++D P N+ F+IT
Sbjct: 645 QIAKLKLHDGP----NDVVFSIT 663
>gi|223972685 IQ motif and ubiquitin domain containing [Homo
sapiens]
Length = 791
Score = 29.3 bits (64), Expect = 5.3
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 152 PGGKIIFIDTENTFRPDRLRDIADRF---NVDHDAVLDNVLYARAYTSEHQMELLDYVAA 208
P GK I +DT+ T R L++I N+ D LD +L + EH+ +L +
Sbjct: 480 PNGKTIEMDTQFTIRARELQNIYKCIMLKNISQDERLDVLLTLKHTVKEHECKLTQEILE 539
Query: 209 KFHEEAGI 216
E +
Sbjct: 540 LIDREVDL 547
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,883,662
Number of Sequences: 37866
Number of extensions: 486312
Number of successful extensions: 1213
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 34
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.