Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 23111026
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23111026 sorting nexin 11 [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23111026 sorting nexin 11 [Homo sapiens] 553 e-158
gi|23111028 sorting nexin 11 [Homo sapiens] 553 e-158
gi|23111023 sorting nexin 10 [Homo sapiens] 183 1e-46
gi|23111030 sorting nexin 12 [Homo sapiens] 77 2e-14
gi|4507143 sorting nexin 3 isoform a [Homo sapiens] 75 5e-14
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 65 8e-11
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 65 8e-11
gi|153791707 sorting nexin family member 30 [Homo sapiens] 61 9e-10
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 58 8e-09
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 58 8e-09
gi|23111038 sorting nexin 2 [Homo sapiens] 57 2e-08
gi|23111032 sorting nexin 1 isoform b [Homo sapiens] 55 6e-08
gi|224177511 sorting nexin 18 isoform c [Homo sapiens] 50 3e-06
gi|157057545 sorting nexin 18 isoform a [Homo sapiens] 50 3e-06
gi|157057543 sorting nexin 18 isoform b [Homo sapiens] 50 3e-06
gi|31742501 sorting nexin family member 27 [Homo sapiens] 48 1e-05
gi|23397574 sorting nexin 33 [Homo sapiens] 45 5e-05
gi|23943858 sorting nexin 8 [Homo sapiens] 45 9e-05
gi|4507145 sorting nexin 4 [Homo sapiens] 44 2e-04
gi|7706706 sorting nexin 9 [Homo sapiens] 43 3e-04
gi|23111041 sorting nexin 3 isoform b [Homo sapiens] 42 4e-04
gi|24797143 sorting nexin 14 isoform b [Homo sapiens] 42 6e-04
gi|24797145 sorting nexin 14 isoform a [Homo sapiens] 42 6e-04
gi|7661890 sorting nexin 17 [Homo sapiens] 39 0.004
gi|154091028 sorting nexin 29 [Homo sapiens] 39 0.005
gi|7662655 SBBI31 protein [Homo sapiens] 38 0.008
gi|34335253 disks large-associated protein 4 isoform a [Homo sap... 36 0.031
gi|223972612 Crm, cramped-like [Homo sapiens] 35 0.069
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 35 0.090
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 35 0.090
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 553 bits (1425), Expect = e-158
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY 60
MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY
Sbjct: 1 MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY 60
Query: 61 REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDS 120
REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDS
Sbjct: 61 REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDS 120
Query: 121 QLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKS 180
QLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKS
Sbjct: 121 QLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKS 180
Query: 181 CCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEG 240
CCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEG
Sbjct: 181 CCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEG 240
Query: 241 TSTLQSVRRAVGGDHAVPLDPGQLETVLEK 270
TSTLQSVRRAVGGDHAVPLDPGQLETVLEK
Sbjct: 241 TSTLQSVRRAVGGDHAVPLDPGQLETVLEK 270
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 553 bits (1425), Expect = e-158
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY 60
MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY
Sbjct: 1 MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY 60
Query: 61 REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDS 120
REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDS
Sbjct: 61 REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDS 120
Query: 121 QLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKS 180
QLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKS
Sbjct: 121 QLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKS 180
Query: 181 CCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEG 240
CCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEG
Sbjct: 181 CCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEG 240
Query: 241 TSTLQSVRRAVGGDHAVPLDPGQLETVLEK 270
TSTLQSVRRAVGGDHAVPLDPGQLETVLEK
Sbjct: 241 TSTLQSVRRAVGGDHAVPLDPGQLETVLEK 270
>gi|23111023 sorting nexin 10 [Homo sapiens]
Length = 201
Score = 183 bits (465), Expect = 1e-46
Identities = 88/162 (54%), Positives = 124/162 (76%), Gaps = 1/162 (0%)
Query: 7 MSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWL 66
M Q++EE ++V V+DPR+Q E W+SY+DY+I +HTNS FT KTSCVRRRYREFVWL
Sbjct: 1 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 60
Query: 67 RKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLF 125
R++LQ NA LV +PELP K+ FF ++ + +++RRQGL+ FL KVLQ+ +LLSDS LHLF
Sbjct: 61 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 120
Query: 126 LQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQ 167
LQS L+ +IEACV G++ +V +AI ++A+ N + +E+ +
Sbjct: 121 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEE 162
>gi|23111030 sorting nexin 12 [Homo sapiens]
Length = 162
Score = 76.6 bits (187), Expect = 2e-14
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 10/104 (9%)
Query: 35 YVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKS-----TFF 89
+ Y++ + TN F K SCVRRRY +F WL+ +L+R++ +V VP LPGK+ F
Sbjct: 47 FTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIV-VPPLPGKALKRQLPFR 105
Query: 90 GT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ 129
G + FIE+RRQGL+ F+ K+ + ++ LH+FLQ +
Sbjct: 106 GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEE 149
>gi|4507143 sorting nexin 3 isoform a [Homo sapiens]
Length = 162
Score = 75.5 bits (184), Expect = 5e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 29 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 87
Query: 77 VPVPELPGKS-----TFFGT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 88 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
Query: 128 SQL 130
++
Sbjct: 147 DEI 149
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 64.7 bits (156), Expect = 8e-11
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 9 ENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRK 68
E QE + +TV + DP +G N+YV YK+ T+ F +K V+RR+ +F+ L +
Sbjct: 137 EEQEDQFDLTVGITDPEKIGDGM-NAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYE 195
Query: 69 QLQ----RNAGLVPVPELPGKSTFFGT----------SDEFIEKRRQGLQHFLEKVLQSV 114
+L +N +VP P P KS T S EF+EKRR L+ +L++++
Sbjct: 196 KLSEKHSQNGFIVPPP--PEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHP 253
Query: 115 VLLSDSQLHLFLQSQ 129
+L D + FL+ +
Sbjct: 254 TMLQDPDVREFLEKE 268
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 64.7 bits (156), Expect = 8e-11
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 9 ENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRK 68
E QE + +TV + DP +G N+YV YK+ T+ F +K V+RR+ +F+ L +
Sbjct: 137 EEQEDQFDLTVGITDPEKIGDGM-NAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYE 195
Query: 69 QLQ----RNAGLVPVPELPGKSTFFGT----------SDEFIEKRRQGLQHFLEKVLQSV 114
+L +N +VP P P KS T S EF+EKRR L+ +L++++
Sbjct: 196 KLSEKHSQNGFIVPPP--PEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHP 253
Query: 115 VLLSDSQLHLFLQSQ 129
+L D + FL+ +
Sbjct: 254 TMLQDPDVREFLEKE 268
>gi|153791707 sorting nexin family member 30 [Homo sapiens]
Length = 437
Score = 61.2 bits (147), Expect = 9e-10
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 19 VRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVP 78
V V DP+ ++ + +Y+ Y+I + F VRRRY++F WLR +L+ +
Sbjct: 93 VIVDDPK-KHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRSKLEESQPTHL 151
Query: 79 VPELPGKSTFFGT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ 129
+P LP K G S+EF+E RR+ L FL+++ VL + ++FL ++
Sbjct: 152 IPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNIFLTAK 206
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 58.2 bits (139), Expect = 8e-09
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 34 SYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGT-- 91
+++ Y+I T+ F + VRRRY++F+WL+ +L+ + +P LP K G
Sbjct: 48 TFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVE 107
Query: 92 --SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ 129
+D+FIE RR+ L FL ++ L + +FL +Q
Sbjct: 108 RFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 147
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 58.2 bits (139), Expect = 8e-09
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 34 SYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGT-- 91
+++ Y+I T+ F + VRRRY++F+WL+ +L+ + +P LP K G
Sbjct: 112 TFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVE 171
Query: 92 --SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ 129
+D+FIE RR+ L FL ++ L + +FL +Q
Sbjct: 172 RFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 211
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 56.6 bits (135), Expect = 2e-08
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQR---N 73
I + V DP +G N+Y+ Y++ T+ F+ V+RR+ +F+ L +L +
Sbjct: 142 IEIGVSDPEKVGDGM-NAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
Query: 74 AGLVPVPELPGKSTFFGT----------SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
G + VP P KS T S EF+EKRR L+ +L++ ++ LL D L
Sbjct: 201 VGYI-VPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLR 259
Query: 124 LFLQS 128
FL+S
Sbjct: 260 QFLES 264
>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
Length = 457
Score = 55.1 bits (131), Expect = 6e-08
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 33 NSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQ----RNAGLVPVPELPGKSTF 88
N+YV YK+ T+ F +K V+RR+ +F+ L ++L +N +VP P P KS
Sbjct: 95 NAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPP--PEKSLI 152
Query: 89 FGT----------SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ 129
T S EF+EKRR L+ +L++++ +L D + FL+ +
Sbjct: 153 GMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 203
>gi|224177511 sorting nexin 18 isoform c [Homo sapiens]
Length = 591
Score = 49.7 bits (117), Expect = 3e-06
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 9 ENQEQEEVITVRVQDPRVQNE-GSWNSYVDYKIF-LHTNSKAFTAKTSCVRRRYREFVWL 66
E QE + DP Q + SY+ YK+ HT V RRY+ F WL
Sbjct: 268 EWQENPYPFQCTIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWL 319
Query: 67 RKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFL 126
+L ++ VP LP K ++FI KRR+GL ++ + VL FL
Sbjct: 320 YARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFL 379
Query: 127 QSQLSVPEIEACVQGR 142
S E +A QG+
Sbjct: 380 TCPSSTDE-KAWKQGK 394
>gi|157057545 sorting nexin 18 isoform a [Homo sapiens]
Length = 624
Score = 49.7 bits (117), Expect = 3e-06
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 9 ENQEQEEVITVRVQDPRVQNE-GSWNSYVDYKIF-LHTNSKAFTAKTSCVRRRYREFVWL 66
E QE + DP Q + SY+ YK+ HT V RRY+ F WL
Sbjct: 268 EWQENPYPFQCTIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWL 319
Query: 67 RKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFL 126
+L ++ VP LP K ++FI KRR+GL ++ + VL FL
Sbjct: 320 YARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFL 379
Query: 127 QSQLSVPEIEACVQGR 142
S E +A QG+
Sbjct: 380 TCPSSTDE-KAWKQGK 394
>gi|157057543 sorting nexin 18 isoform b [Homo sapiens]
Length = 628
Score = 49.7 bits (117), Expect = 3e-06
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 9 ENQEQEEVITVRVQDPRVQNE-GSWNSYVDYKIF-LHTNSKAFTAKTSCVRRRYREFVWL 66
E QE + DP Q + SY+ YK+ HT V RRY+ F WL
Sbjct: 268 EWQENPYPFQCTIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWL 319
Query: 67 RKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFL 126
+L ++ VP LP K ++FI KRR+GL ++ + VL FL
Sbjct: 320 YARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFL 379
Query: 127 QSQLSVPEIEACVQGR 142
S E +A QG+
Sbjct: 380 TCPSSTDE-KAWKQGK 394
>gi|31742501 sorting nexin family member 27 [Homo sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 1e-05
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 19 VRVQDPRVQN-EGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLV 77
V + PR ++ E + +V Y +++ A +RYREF L + L+R
Sbjct: 163 VPISVPRYKHVEQNGEKFVVYNVYM--------AGRQLCSKRYREFAILHQNLKREFANF 214
Query: 78 PVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ------LS 131
P LPGK F S++ ++ RR+GL+ +LEKV V+ + FL +S
Sbjct: 215 TFPRLPGKWP-FSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVS 273
Query: 132 VPEIEACVQGRSTMTV 147
E+ + +T+TV
Sbjct: 274 DVELRVALPDGTTVTV 289
>gi|23397574 sorting nexin 33 [Homo sapiens]
Length = 574
Score = 45.4 bits (106), Expect = 5e-05
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 21 VQDPRVQNEGSW-NSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPV 79
V+DP Q + SY+ YK+ T S V RRY+ F WL +L ++ V
Sbjct: 234 VEDPTKQTKFKGIKSYISYKL-------TPTHAASPVYRRYKHFDWLYNRLLHKFTVISV 286
Query: 80 PELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVL 116
P LP K ++FIEKR++ L +++ + VL
Sbjct: 287 PHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVL 323
>gi|23943858 sorting nexin 8 [Homo sapiens]
Length = 465
Score = 44.7 bits (104), Expect = 9e-05
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 27 QNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKS 86
+ +G + +V+Y++ +S+ F S V RRY +FV ++ L VP LP K
Sbjct: 84 EKKGLFLKHVEYEV----SSQRFK---SSVYRRYNDFVVFQEMLLHKFPYRMVPALPPKR 136
Query: 87 TFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFL 126
G EFIE RR+ L+ F+ V + + D L LFL
Sbjct: 137 -MLGADREFIEARRRALKRFVNLVARHPLFSEDVVLKLFL 175
>gi|4507145 sorting nexin 4 [Homo sapiens]
Length = 450
Score = 43.5 bits (101), Expect = 2e-04
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 43 HTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFF--------GTSDE 94
HT+ ++ T + RRY EF LR L + VP LP K F +
Sbjct: 92 HTDGQSVL--TDSLWRRYSEFELLRSYLLVYYPHIVVPPLPEKRAEFVWHKLSADNMDPD 149
Query: 95 FIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQ 129
F+E+RR GL++FL ++ +L D +LFL +
Sbjct: 150 FVERRRIGLENFLLRIASHPILCRDKIFYLFLTQE 184
>gi|7706706 sorting nexin 9 [Homo sapiens]
Length = 595
Score = 42.7 bits (99), Expect = 3e-04
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 21 VQDPRVQNEG-SWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAG-LVP 78
V DPR ++ SY++Y++ +++ V RY+ F WL ++L G +P
Sbjct: 254 VADPRKGSKMYGLKSYIEYQLTPTNTNRS-------VNHRYKHFDWLYERLLVKFGSAIP 306
Query: 79 VPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFL 126
+P LP K +EFI+ R + LQ ++ ++ + V+ FL
Sbjct: 307 IPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFL 354
>gi|23111041 sorting nexin 3 isoform b [Homo sapiens]
Length = 130
Score = 42.4 bits (98), Expect = 4e-04
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 77 VPVPELPGKS-----TFFGTS----DEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 55 VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 114
Query: 128 SQL 130
++
Sbjct: 115 DEI 117
>gi|24797143 sorting nexin 14 isoform b [Homo sapiens]
Length = 893
Score = 42.0 bits (97), Expect = 6e-04
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVV 115
V RRY EF L +L G P +LP K + EF++ +R+ Q +L+K+LQ
Sbjct: 560 VYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPE 619
Query: 116 LLSDSQL 122
LS+SQL
Sbjct: 620 -LSNSQL 625
>gi|24797145 sorting nexin 14 isoform a [Homo sapiens]
Length = 946
Score = 42.0 bits (97), Expect = 6e-04
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVV 115
V RRY EF L +L G P +LP K + EF++ +R+ Q +L+K+LQ
Sbjct: 613 VYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPE 672
Query: 116 LLSDSQL 122
LS+SQL
Sbjct: 673 -LSNSQL 678
>gi|7661890 sorting nexin 17 [Homo sapiens]
Length = 470
Score = 39.3 bits (90), Expect = 0.004
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 33 NSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTS 92
++YV Y I H N R RY + + L +QL++ G +P P K F T
Sbjct: 18 SAYVAYNI--HVNGVLHC------RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTP 69
Query: 93 DEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
E +E+RR+ L+ +++ V Q +L S + FL+
Sbjct: 70 AE-VEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 103
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 38.9 bits (89), Expect = 0.005
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 33 NSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTS 92
N++ Y++++ + + RRY EF L +LQ V P K
Sbjct: 288 NAFHVYQVYIRIKDDEWN-----IYRRYTEFRSLHHKLQNKYPQVRAYNFPPKKAIGNKD 342
Query: 93 DEFIEKRRQGLQHFLEKVLQSVV 115
+F+E+RR+ LQ++L V+ V+
Sbjct: 343 AKFVEERRKQLQNYLRSVMNKVI 365
>gi|7662655 SBBI31 protein [Homo sapiens]
Length = 169
Score = 38.1 bits (87), Expect = 0.008
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVV 115
V +RY EF L K+L++ + PE+P K + +E+RRQG LE LQ+V+
Sbjct: 35 VEKRYSEFHALHKKLKK---CIKTPEIPSKHVR-NWVPKVLEQRRQG----LETYLQAVI 86
Query: 116 LLSDSQLHLFL-----QSQLSVPEIEAC 138
L ++ LFL + S+P+ E+C
Sbjct: 87 LENEELPKLFLDFLNVRHLPSLPKAESC 114
>gi|34335253 disks large-associated protein 4 isoform a [Homo
sapiens]
Length = 989
Score = 36.2 bits (82), Expect = 0.031
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 133 PEIEACVQGRSTMTVSD----AILRYAMSNCGWAQEERQSSSHLAKGDQPKSCCFLPRSG 188
P+ A + T+T S+ A + +S+ G + R++ SHL++ + PK+ + S
Sbjct: 637 PKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQERTRRNGSHLSEDNGPKAIDVMAPSS 696
Query: 189 RRSSPSPPPSEEKDHLEVWAPVVDSEVPSLES--PTLPPLSSPLCCDFGRPKEGTSTLQS 246
S PS S +D DS S E P P + + D G P++ Q
Sbjct: 697 ESSVPSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTPHPNSISIDAG-PRQAPKIAQI 755
Query: 247 VRRAVGGDHAVP 258
R GD++ P
Sbjct: 756 KRNLSYGDNSDP 767
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 35.0 bits (79), Expect = 0.069
Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 13/158 (8%)
Query: 100 RQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNC 159
+ GL L S LS + L L P +A QG +SD+I+ A+S+
Sbjct: 1050 QNGLSIPLSSSESSSTRLSPPDVSALLDISLPGPPEDALSQGEPATHISDSIIEIAISSG 1109
Query: 160 GWAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAP--VVDSEVPS 217
+ + S + L D KS LP SSP P H W P DS + S
Sbjct: 1110 QYGEGVPLSPAKLNGSDSSKS---LPSPS--SSPQPHWIASPTHDPQWYPSDSTDSSLSS 1164
Query: 218 LESPTLPP------LSSPLCCDFGRPKEGTSTLQSVRR 249
L + + P L +P+ + G G S L R
Sbjct: 1165 LFASFISPEKSRKMLPTPIGTNSGTSLLGPSLLDGNSR 1202
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 34.7 bits (78), Expect = 0.090
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSV 114
V RRY EF L L++ + + ++P K F D +FI++RR GL F++ +++
Sbjct: 47 VFRRYAEFDKLYNTLKKQFPAMAL-KIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYP 105
Query: 115 VLLSDSQLHLFLQ 127
L + + FLQ
Sbjct: 106 ELYNHPDVRAFLQ 118
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 34.7 bits (78), Expect = 0.090
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 56 VRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSV 114
V RRY EF L L++ + + ++P K F D +FI++RR GL F++ +++
Sbjct: 47 VFRRYAEFDKLYNTLKKQFPAMAL-KIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYP 105
Query: 115 VLLSDSQLHLFLQ 127
L + + FLQ
Sbjct: 106 ELYNHPDVRAFLQ 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,940,039
Number of Sequences: 37866
Number of extensions: 609030
Number of successful extensions: 2583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2500
Number of HSP's gapped (non-prelim): 145
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.