Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 22748643
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748643 chromatin modifying protein 4C [Homo sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748643 chromatin modifying protein 4C [Homo sapiens] 451 e-127
gi|28827795 chromatin modifying protein 4B [Homo sapiens] 289 1e-78
gi|40548422 chromatin modifying protein 4A [Homo sapiens] 244 4e-65
gi|31542673 chromatin modifying protein 6 [Homo sapiens] 76 2e-14
gi|22748641 CHMP family, member 7 [Homo sapiens] 65 6e-11
gi|189409150 chromatin modifying protein 5 [Homo sapiens] 60 1e-09
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 45 4e-05
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 41 8e-04
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 39 0.003
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 39 0.003
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 39 0.003
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 39 0.004
gi|40254866 chromatin modifying protein 2B [Homo sapiens] 39 0.005
gi|46852174 kinesin family member 3A [Homo sapiens] 39 0.005
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 39 0.005
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 39 0.005
gi|7705415 hook homolog 1 [Homo sapiens] 39 0.005
gi|7706353 vacuolar protein sorting 24 isoform 1 [Homo sapiens] 38 0.007
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 38 0.007
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 38 0.007
gi|118498362 kinectin 1 isoform b [Homo sapiens] 37 0.011
gi|118498356 kinectin 1 isoform a [Homo sapiens] 37 0.011
gi|118498368 kinectin 1 isoform c [Homo sapiens] 37 0.011
gi|33620775 kinectin 1 isoform a [Homo sapiens] 37 0.011
gi|114155148 tropomyosin 3 isoform 5 [Homo sapiens] 37 0.011
gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens] 37 0.011
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 37 0.011
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 37 0.011
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 37 0.019
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 37 0.019
>gi|22748643 chromatin modifying protein 4C [Homo sapiens]
Length = 233
Score = 451 bits (1161), Expect = e-127
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQ 60
MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQ
Sbjct: 1 MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQ 60
Query: 61 NKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVH 120
NKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVH
Sbjct: 61 NKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVH 120
Query: 121 ENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKM 180
ENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKM
Sbjct: 121 ENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKM 180
Query: 181 TNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQLAAWAT 233
TNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQLAAWAT
Sbjct: 181 TNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQLAAWAT 233
>gi|28827795 chromatin modifying protein 4B [Homo sapiens]
Length = 224
Score = 289 bits (740), Expect = 1e-78
Identities = 147/238 (61%), Positives = 184/238 (77%), Gaps = 23/238 (9%)
Query: 1 MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQ 60
MS GK F GG + P+PQEA+ RLR+TEEML KKQE+LE +I++E+ AKKHGT+
Sbjct: 1 MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTK 60
Query: 61 NKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVH 120
NKRAALQALKRKKR+EKQL QIDGTLSTIEFQREALEN++TNTEVL+NMG+AAKAMK+ H
Sbjct: 61 NKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAH 120
Query: 121 ENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKM 180
+NMD++K+D+LMQ+I +QQ++A+EIS A S+ VGFG++FDEDELMAELEELEQEEL+K +
Sbjct: 121 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNL 180
Query: 181 TNIR------LPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQLAAWA 232
I LPNVPS +LP++P +K EEEDDD+K+L WA
Sbjct: 181 LEISGPETVPLPNVPSIALPSKPAKK-----------------KEEEDDDMKELENWA 221
>gi|40548422 chromatin modifying protein 4A [Homo sapiens]
Length = 265
Score = 244 bits (624), Expect = 4e-65
Identities = 126/242 (52%), Positives = 177/242 (73%), Gaps = 29/242 (11%)
Query: 1 MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQ 60
MS LG+ F G K P+P+EA+ +L+ETE++L KKQE+LE +IQ+E+ AKK+GT+
Sbjct: 44 MSGLGRLF---GKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTK 100
Query: 61 NKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVH 120
NKRAALQAL+RKKRFE+QL Q DGTLST+EFQREA+EN+ TN EVLR M AA++MK +
Sbjct: 101 NKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAY 160
Query: 121 ENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKM 180
++MD++K+D+LM +ITEQQ++AQ+IS+A S+ +GFGDD DEDEL+ ELEELEQEEL +++
Sbjct: 161 QDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDEDELLEELEELEQEELAQEL 220
Query: 181 TN---------IRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQLAAW 231
N ++LP+VPS+ LPA P + + +E+++ +KQLA W
Sbjct: 221 LNVGDKEEEPSVKLPSVPSTHLPAGP-----------------APKVDEDEEALKQLAEW 263
Query: 232 AT 233
+
Sbjct: 264 VS 265
>gi|31542673 chromatin modifying protein 6 [Homo sapiens]
Length = 201
Score = 76.3 bits (186), Expect = 2e-14
Identities = 48/206 (23%), Positives = 104/206 (50%), Gaps = 12/206 (5%)
Query: 12 GSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKR 71
G K +A+++L++ + L + Q+ + +++RE ALA++ ++ + L +
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLK 65
Query: 72 KKRFEKQ-LTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDD 130
KKR+++Q L + + +S++E +++E + +V+ + F + + +H+ M + +++
Sbjct: 66 KKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVER 125
Query: 131 LMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPS 190
++ E E + ++I E + G DED ++ EL + QE+ I LP VPS
Sbjct: 126 ILDETQEAVEYQRQIDELLA---GSFTQEDEDAILEELSAITQEQ-------IELPEVPS 175
Query: 191 SSLPAQ-PNRKPGMSSTARRSRAASS 215
LP + P P + + A+S
Sbjct: 176 EPLPEKIPENVPVKARPRQAELVAAS 201
>gi|22748641 CHMP family, member 7 [Homo sapiens]
Length = 453
Score = 64.7 bits (156), Expect = 6e-11
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 3 KLGKFFKGGGSSKSRAAPSPQE----ALVRLRETEEMLGKKQEYLENRIQR---EIALAK 55
K+ KF +G RA SP + +L ++E++L +K E L +R E A
Sbjct: 219 KIVKFARG-----PRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEEARRAC 273
Query: 56 KHGTQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKA 115
+ G K+ AL++LK K+R EK++ + L T++ + + S T+ V A
Sbjct: 274 RAG--KKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVGA 331
Query: 116 MKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEE 175
+K +++ + K + L+ +I E D E+S+ + V G DFD +EL EL+ L Q+
Sbjct: 332 LKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQDT 391
Query: 176 LNKKMTNIRLPNVP 189
+ + LP+ P
Sbjct: 392 TKEPLD---LPDNP 402
>gi|189409150 chromatin modifying protein 5 [Homo sapiens]
Length = 219
Score = 60.5 bits (145), Expect = 1e-09
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 12 GSSKSRAAP-SPQEALVRLRETEEMLGKKQEYLENRIQR---EIALAKKHGTQN--KRAA 65
G +K +A P S + + + E + KK L+ + + +I ++ +N K+ A
Sbjct: 6 GKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKA 65
Query: 66 LQALKRKKRFEKQ---LTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHEN 122
L+ LK+K+ +E+Q L Q + + ++L+++ T + ++ K MK ++
Sbjct: 66 LRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMK---LGVKEMKKAYKQ 122
Query: 123 MDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEEL 176
+ +++I+DL ++ + + A EI EA S+ G + DED+L AEL+ L E L
Sbjct: 123 VKIDQIEDLQDQLEDMMEDANEIQEALSRSYG-TPELDEDDLEAELDALGDELL 175
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 45.4 bits (106), Expect = 4e-05
Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 9 KGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQA 68
K G SK+ + QEAL +L+E EE +++E R++ E+ +K + ++ +
Sbjct: 332 KKKGPSKA-TVKAMQEALAKLKEEEERQKREEEERIKRLE-ELEAKRKEEERLEQEKRER 389
Query: 69 LKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKS------VHEN 122
K+K++ K+ + +G L T + QREA + ++L+ G + S ++E+
Sbjct: 390 KKQKEKERKERLKKEGKLLT-KSQREARARAEATLKLLQAQGVEVPSKDSLPKKRPIYED 448
Query: 123 MDLNKIDDLMQ--EITEQQDIAQEISEAFSQRVGFGDD-----------------FDEDE 163
KI ++ E++E ++ + E Q V ++ D+ E
Sbjct: 449 KKRKKIPQQLESKEVSESMELCAAV-EVMEQGVPEKEETPPPVEPEEEEDTEDAGLDDWE 507
Query: 164 LMAELEELEQEELNKKMTNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDD 223
MA EE E+ E NK +I + P + + S S+ +E +++
Sbjct: 508 AMASDEETEKVEGNK--VHIEVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEE 565
Query: 224 DIK 226
D K
Sbjct: 566 DEK 568
Score = 32.7 bits (73), Expect = 0.27
Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 114 KAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQ 173
K+ S +++DL+ + ++ ++ + S+ ++ DFDED+++ ELEEL
Sbjct: 8 KSEDSTKDDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDEDDILKELEELSL 67
Query: 174 EELNKKMTNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQL 228
E K + P+ N + +S ++ + ++ +D+D ++L
Sbjct: 68 EAQGIKADRETVAVKPTE------NNEEEFTSKDKKKKGQKGKKQSFDDNDSEEL 116
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 41.2 bits (95), Expect = 8e-04
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 49/203 (24%)
Query: 15 KSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKK--------------HGTQ 60
K+R + +E R++E EE L +++E LE+ I E AK+ H TQ
Sbjct: 734 KNRVKEALEEEQTRVQELEERLARQKEVLESSIAHEKRKAKEALESEKRKVQDLENHLTQ 793
Query: 61 NKRA-----ALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAA-- 113
K A + K K+ EK+ ++ + + Q+E LE +VL N A
Sbjct: 794 QKEISESNIAYEKRKAKEAMEKEKKKVQDLENRLTKQKEELELKEQKEDVLNNKLSDALA 853
Query: 114 --------KAMKSVHENMDLNKIDDLMQE---------------ITEQQDIAQEISEAFS 150
KA +S+ K+++ + E I +Q+ + E S
Sbjct: 854 MVEETQKTKATESLKAESLALKLNETLAELETTKTKMIMVEERLILQQKMVKALQDEQES 913
Query: 151 QRVGFGDDFDEDELMAELEELEQ 173
QR GF E+E+M E+++Q
Sbjct: 914 QRHGF-----EEEIMEYKEQIKQ 931
Score = 29.6 bits (65), Expect = 2.3
Identities = 40/212 (18%), Positives = 83/212 (39%), Gaps = 34/212 (16%)
Query: 30 RETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQIDGTLSTI 89
R+ E+ + +K + L+ I AK+ Q+ ++ + AL+ K + K L Q
Sbjct: 275 RQNEKEISQKCQVLDEDID-----AKQKEIQSLKSQISALQ--KGYSKVLCQ-------- 319
Query: 90 EFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAF 149
L ++ L+N G K ++ M + D++ + + Q + +E+S
Sbjct: 320 -----TLSERNSEITSLKNEGENLKRDNAITSGMVSSLQKDILAKDEQVQQLKEEVSHLK 374
Query: 150 SQRVG--------------FGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSSLPA 195
SQ ++ +++ EL E +++EL T I+ L A
Sbjct: 375 SQNKDKDHQLEALGSRCSVLKEELKQEDAHRELREAQEKELKLCKTQIQDMEKEMKKLRA 434
Query: 196 QPNRKPGMSSTARRSRAASSQRAEEEDDDIKQ 227
+ + S R+ S+ E+ +D ++
Sbjct: 435 ELRKSCTEQSVISRTLREKSKVEEKLQEDSRR 466
Score = 28.5 bits (62), Expect = 5.2
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 134 EITEQQDIAQEISEAFSQRVGFGDDFDEDELMA----ELEELEQEELNKKMTNIRLPNVP 189
EI ++D+AQ+ D+DE++ E+ L E+ K ++ + N+
Sbjct: 214 EIYVEEDLAQQ---------------DKDEIILLLGKEVSRLSDYEIESKYKDVIIANLQ 258
Query: 190 SSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDDI 225
+ A+ ++K ++T+R++ SQ+ + D+DI
Sbjct: 259 NEV--AELSQKVSETTTSRQNEKEISQKCQVLDEDI 292
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 39.3 bits (90), Expect = 0.003
Identities = 41/195 (21%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 14 SKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKR------AALQ 67
++ +A +E + RE +E KKQ LE R++++ L ++ + ++ AA Q
Sbjct: 393 AERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQ 452
Query: 68 ALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNK 127
L+R++R E + + L+ + RE E N++ +N+ +A+ H+ +
Sbjct: 453 ELERQRRLEWERIRRQELLN--QKNREQEEIVRLNSK-KKNLHLELEALNGKHQ-----Q 504
Query: 128 IDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEEL---------EQEELNK 178
I +Q++ ++ + E ++ + + +L EL+E E++ LN+
Sbjct: 505 ISGRLQDVRLKKQTQKTELEVLDKQCDL-EIMEIKQLQQELQEYQNKLIYLVPEKQLLNE 563
Query: 179 KMTNIRLPNVPSSSL 193
++ N++ N P S +
Sbjct: 564 RIKNMQFSNTPDSGV 578
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 39.3 bits (90), Expect = 0.003
Identities = 41/195 (21%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 14 SKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKR------AALQ 67
++ +A +E + RE +E KKQ LE R++++ L ++ + ++ AA Q
Sbjct: 393 AERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQ 452
Query: 68 ALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNK 127
L+R++R E + + L+ + RE E N++ +N+ +A+ H+ +
Sbjct: 453 ELERQRRLEWERIRRQELLN--QKNREQEEIVRLNSK-KKNLHLELEALNGKHQ-----Q 504
Query: 128 IDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEEL---------EQEELNK 178
I +Q++ ++ + E ++ + + +L EL+E E++ LN+
Sbjct: 505 ISGRLQDVRLKKQTQKTELEVLDKQCDL-EIMEIKQLQQELQEYQNKLIYLVPEKQLLNE 563
Query: 179 KMTNIRLPNVPSSSL 193
++ N++ N P S +
Sbjct: 564 RIKNMQFSNTPDSGV 578
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 39.3 bits (90), Expect = 0.003
Identities = 41/195 (21%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 14 SKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKR------AALQ 67
++ +A +E + RE +E KKQ LE R++++ L ++ + ++ AA Q
Sbjct: 393 AERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQ 452
Query: 68 ALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNK 127
L+R++R E + + L+ + RE E N++ +N+ +A+ H+ +
Sbjct: 453 ELERQRRLEWERIRRQELLN--QKNREQEEIVRLNSK-KKNLHLELEALNGKHQ-----Q 504
Query: 128 IDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEEL---------EQEELNK 178
I +Q++ ++ + E ++ + + +L EL+E E++ LN+
Sbjct: 505 ISGRLQDVRLKKQTQKTELEVLDKQCDL-EIMEIKQLQQELQEYQNKLIYLVPEKQLLNE 563
Query: 179 KMTNIRLPNVPSSSL 193
++ N++ N P S +
Sbjct: 564 RIKNMQFSNTPDSGV 578
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 38.9 bits (89), Expect = 0.004
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 14/219 (6%)
Query: 23 QEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQI 82
+E L ++RE E +KQ+ I + A+ Q +R ++ K+ E++L ++
Sbjct: 1158 EEELPKVREAAENELRKQQRNVEDISLQKIRAESEAKQYRRELETIVREKEAAERELERV 1217
Query: 83 DGTLSTIEFQREALENSHTN-TEVLRNMGFAAKAMKSVHENMDLNKID------DLMQEI 135
E +R A+E + N L F + ++ + DL+ D LM+E+
Sbjct: 1218 RQLTIEAEAKRAAVEENLLNFRNQLEENTFTRRTLEDHLKRKDLSLNDLEQQKNKLMEEL 1277
Query: 136 TEQQDIAQEISEAFSQR---VGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSS 192
++D +E+ + Q + F E +L E +++E E +K+T I+ ++
Sbjct: 1278 RRKRDNEEELLKLIKQMEKDLAFQKQVAEKQL-KEKQKIEL-EARRKITEIQY-TCRENA 1334
Query: 193 LPAQP-NRKPGMSSTARRSRAASSQRAEEEDDDIKQLAA 230
LP P + + + Q+AEE + +L A
Sbjct: 1335 LPVCPITQATSCRAVTGLQQEHDKQKAEELKQQVDELTA 1373
Score = 28.5 bits (62), Expect = 5.2
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 94 EALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRV 153
E ++ T+ LRN+ A + S + ++K++DL+QE E+++ + + +
Sbjct: 483 EFFNDAKEATDYLRNLKDAIQRKYSCDRSSSIHKLEDLVQESMEEKEELLQYKSTIANLM 542
Query: 154 G 154
G
Sbjct: 543 G 543
>gi|40254866 chromatin modifying protein 2B [Homo sapiens]
Length = 213
Score = 38.5 bits (88), Expect = 0.005
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 16/200 (8%)
Query: 29 LRETEEMLGKKQEYLENRI-QREIALAKKHGTQNKRAALQALKRKKRFEKQLTQIDGTLS 87
LR T+ + + + LE + Q E+ + K NK A K+ KQ T+ S
Sbjct: 21 LRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSS 80
Query: 88 TIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQEISE 147
+ + ++ ++ M AK M++V++ MD K MQ +++++ E++E
Sbjct: 81 KVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNF-QKENMKMEMTE 139
Query: 148 AFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSSLPAQPNRKPGMSSTA 207
D D+ ++ EE Q+ +N+ + I + S + P S A
Sbjct: 140 EM-----INDTLDDIFDGSDDEEESQDIVNQVLDEIGIE--ISGKMAKAP-------SAA 185
Query: 208 RRSRAASSQRAEEEDDDIKQ 227
R +AS+ +A D++I++
Sbjct: 186 RSLPSASTSKATISDEEIER 205
>gi|46852174 kinesin family member 3A [Homo sapiens]
Length = 699
Score = 38.5 bits (88), Expect = 0.005
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 29/195 (14%)
Query: 14 SKSRAAPSPQEALVRLRETE-EMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRK 72
+K+R P++AL+R + E E L KK E E +I+ +++ + KRK
Sbjct: 347 NKARINEDPKDALLRQFQKEIEELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRK 406
Query: 73 KRFEKQLTQIDGTL---STIEFQREALENSHTNTEVLRNMGFAA------KAMKSVHENM 123
KR K+ D + + I+ +R+ALE E RN A +K+ E+
Sbjct: 407 KRRGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQ 466
Query: 124 DL-NKID-----------DLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEEL 171
L K+ DL+ + EQ+ + +E + +R + +L ELEE
Sbjct: 467 SLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAE-----QLRRELEEK 521
Query: 172 EQEELN--KKMTNIR 184
EQE L+ +K T+++
Sbjct: 522 EQERLDIEEKYTSLQ 536
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 38.5 bits (88), Expect = 0.005
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 28 RLRETEEMLGKK-----------QEYLENRIQREIALAKKHGTQNKRAALQALKRK---- 72
+L+E+++MLG+ ++ +N + R+ + K + K A Q L+ +
Sbjct: 530 QLQESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEV 589
Query: 73 -KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDL 131
K +L +ID Q + L H ++ + A+ +K + KI +L
Sbjct: 590 EKETRSKLQEID----IFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQE---RKIIEL 642
Query: 132 MQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKK 179
++ E Q AQE + + + V D+ + E E+L++EE KK
Sbjct: 643 EKQKEEAQRRAQERDKQWLEHVQQEDEHQRPRKLHEEEKLKREESVKK 690
Score = 28.1 bits (61), Expect = 6.7
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 30 RETEEMLGKKQEYLENRIQREIALAKKHGTQNKR------AALQALKRKKRFE------- 76
RE +E K+Q LE +++++ L ++ + ++ AA + L+R+++ E
Sbjct: 396 RERQEQERKRQLELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQ 455
Query: 77 ----------KQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLN 126
+ + + T+EF+ EAL + E + + E N
Sbjct: 456 ELLNQRNKEQEDIVVLKAKKKTLEFELEALNDKKHQLEG-KLQDIRCRLTTQRQEIESTN 514
Query: 127 KIDDL-MQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNK 178
K +L + EIT Q QE + + + ++ L +L++++Q L++
Sbjct: 515 KSRELRIAEITHLQQQLQESQQMLGRLIP-----EKQILNDQLKQVQQNSLHR 562
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 38.5 bits (88), Expect = 0.005
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 28 RLRETEEMLGKK-----------QEYLENRIQREIALAKKHGTQNKRAALQALKRK---- 72
+L+E+++MLG+ ++ +N + R+ + K + K A Q L+ +
Sbjct: 530 QLQESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEV 589
Query: 73 -KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDL 131
K +L +ID Q + L H ++ + A+ +K + KI +L
Sbjct: 590 EKETRSKLQEID----IFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQE---RKIIEL 642
Query: 132 MQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKK 179
++ E Q AQE + + + V D+ + E E+L++EE KK
Sbjct: 643 EKQKEEAQRRAQERDKQWLEHVQQEDEHQRPRKLHEEEKLKREESVKK 690
Score = 28.1 bits (61), Expect = 6.7
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 30 RETEEMLGKKQEYLENRIQREIALAKKHGTQNKR------AALQALKRKKRFE------- 76
RE +E K+Q LE +++++ L ++ + ++ AA + L+R+++ E
Sbjct: 396 RERQEQERKRQLELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQ 455
Query: 77 ----------KQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLN 126
+ + + T+EF+ EAL + E + + E N
Sbjct: 456 ELLNQRNKEQEDIVVLKAKKKTLEFELEALNDKKHQLEG-KLQDIRCRLTTQRQEIESTN 514
Query: 127 KIDDL-MQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNK 178
K +L + EIT Q QE + + + ++ L +L++++Q L++
Sbjct: 515 KSRELRIAEITHLQQQLQESQQMLGRLIP-----EKQILNDQLKQVQQNSLHR 562
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 38.5 bits (88), Expect = 0.005
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 23 QEALVRLRETEEMLGKKQEYLENRIQREI--ALAKKHGTQNKRAALQALKRKKRFEKQLT 80
+E +RL+ +ML +QE EN E+ L +KH N+ Q L K+R +
Sbjct: 464 REVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELETEQRLS-KERIRELQQ 522
Query: 81 QIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNK--IDDLMQEITEQ 138
QI+ +++ Q E +++++ + + + + VHE + + I+DL +I +
Sbjct: 523 QIEDLQKSLQEQGSKSE-GESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDINQN 581
Query: 139 QDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIR 184
E+ A ++ DE M +EE + L K I+
Sbjct: 582 VQKINELEAALQKK---------DEDMKAMEERYKMYLEKARNVIK 618
>gi|7706353 vacuolar protein sorting 24 isoform 1 [Homo sapiens]
Length = 222
Score = 38.1 bits (87), Expect = 0.007
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 44 ENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNT 103
E +++R + A K G K + K R K ++++ + + + ++N
Sbjct: 41 EEKVKRSVKDAAKKG--QKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL 98
Query: 104 EVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDE 163
V ++ + + MK++ + + +I M+E++++ A I E + D+ E
Sbjct: 99 RVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTF---ESMDDQE 155
Query: 164 LMAELEELEQEELNKKMTNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEED 222
M E E+E + + ++T L PS A P +P + AAS EEE+
Sbjct: 156 EMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEP------PGAMAASEDEEEEEE 208
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 38.1 bits (87), Expect = 0.007
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 23/217 (10%)
Query: 13 SSKSRAAPSPQEALVRLRETEEMLGK------------KQEYLENRIQREIALAKKHGTQ 60
S KSR PS Q ++ + L + ++E+L N + + K
Sbjct: 276 SEKSRPGPSLQIQDLKGTNRDPRLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPS 335
Query: 61 NKRAALQALKRK---KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMK 117
K + + K K K +K+L Q+D + L+N ++T+ L+N + +
Sbjct: 336 EKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLS 395
Query: 118 SVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELN 177
D+NK D +++ QD + ++ + D+DE M E N
Sbjct: 396 ------DMNKRDPRLKK--HLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSEHRLAGSRN 447
Query: 178 KKMTNIRLPNVPSSSLPAQPNRKPGMSSTARRSRAAS 214
K + I + + KPG SST +RSR+ S
Sbjct: 448 KIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRS 484
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 38.1 bits (87), Expect = 0.007
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 129 DDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNI-RLPN 187
D+L+ + E E +R D+DE + +++E+EE K++ I LP
Sbjct: 1015 DELLSQFKVANFATMEDEEELEERPH--KDWDEIIPEEQRKKVEEEERQKELEEIYMLPR 1072
Query: 188 VPSSSLPAQPNRKPGMSSTARRSRAASSQRAEEEDDD 224
+ SS+ AQ N + + R+++ +S+ +E ED D
Sbjct: 1073 IRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSD 1109
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 37.4 bits (85), Expect = 0.011
Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 29/216 (13%)
Query: 23 QEALVRLRETEEMLGKKQEYLENRIQ----------REIALAKKHGTQNKRAALQALKRK 72
++ L++L E+E+ K+E L+ ++Q +I A++ A +
Sbjct: 547 EQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELH 606
Query: 73 KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLM 132
K ++ QI T ++ +R+ L + + ++NM F KA ++ L
Sbjct: 607 KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKA-----------EVQKLQ 655
Query: 133 QEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSS 192
EQ A E+ E Q V + +D+ + LEE Q E++ KM ++ N + +
Sbjct: 656 ALANEQAAAAHEL-EKMQQSV-----YVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKA 709
Query: 193 LPAQPNRKPGMSSTARRSRAASSQR--AEEEDDDIK 226
L ++ + + S +E+D+ +K
Sbjct: 710 LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLK 745
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.4 bits (85), Expect = 0.011
Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 29/216 (13%)
Query: 23 QEALVRLRETEEMLGKKQEYLENRIQ----------REIALAKKHGTQNKRAALQALKRK 72
++ L++L E+E+ K+E L+ ++Q +I A++ A +
Sbjct: 547 EQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELH 606
Query: 73 KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLM 132
K ++ QI T ++ +R+ L + + ++NM F KA ++ L
Sbjct: 607 KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKA-----------EVQKLQ 655
Query: 133 QEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSS 192
EQ A E+ E Q V + +D+ + LEE Q E++ KM ++ N + +
Sbjct: 656 ALANEQAAAAHEL-EKMQQSV-----YVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKA 709
Query: 193 LPAQPNRKPGMSSTARRSRAASSQR--AEEEDDDIK 226
L ++ + + S +E+D+ +K
Sbjct: 710 LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLK 745
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 37.4 bits (85), Expect = 0.011
Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 29/216 (13%)
Query: 23 QEALVRLRETEEMLGKKQEYLENRIQ----------REIALAKKHGTQNKRAALQALKRK 72
++ L++L E+E+ K+E L+ ++Q +I A++ A +
Sbjct: 547 EQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELH 606
Query: 73 KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLM 132
K ++ QI T ++ +R+ L + + ++NM F KA ++ L
Sbjct: 607 KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKA-----------EVQKLQ 655
Query: 133 QEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSS 192
EQ A E+ E Q V + +D+ + LEE Q E++ KM ++ N + +
Sbjct: 656 ALANEQAAAAHEL-EKMQQSV-----YVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKA 709
Query: 193 LPAQPNRKPGMSSTARRSRAASSQR--AEEEDDDIK 226
L ++ + + S +E+D+ +K
Sbjct: 710 LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLK 745
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.4 bits (85), Expect = 0.011
Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 29/216 (13%)
Query: 23 QEALVRLRETEEMLGKKQEYLENRIQ----------REIALAKKHGTQNKRAALQALKRK 72
++ L++L E+E+ K+E L+ ++Q +I A++ A +
Sbjct: 547 EQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELH 606
Query: 73 KRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLM 132
K ++ QI T ++ +R+ L + + ++NM F KA ++ L
Sbjct: 607 KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKA-----------EVQKLQ 655
Query: 133 QEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSS 192
EQ A E+ E Q V + +D+ + LEE Q E++ KM ++ N + +
Sbjct: 656 ALANEQAAAAHEL-EKMQQSV-----YVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKA 709
Query: 193 LPAQPNRKPGMSSTARRSRAASSQR--AEEEDDDIK 226
L ++ + + S +E+D+ +K
Sbjct: 710 LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLK 745
>gi|114155148 tropomyosin 3 isoform 5 [Homo sapiens]
Length = 247
Score = 37.4 bits (85), Expect = 0.011
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 24 EALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQID 83
EA+ R + + E R+QRE+ ++ Q + +R + E++L +
Sbjct: 8 EAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQ 67
Query: 84 GTLST----IEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQ 139
L+T +E +A + S +V+ N +A+K E M+L +I ++ E +
Sbjct: 68 ERLATALQKLEEAEKAADESERGMKVIEN-----RALKD-EEKMELQEI-----QLKEAK 116
Query: 140 DIAQEISEAFSQ----RVGFGDDFDEDELMAELEELEQEELNKKMTNI 183
IA+E + + V D + E AEL E + EL +++ N+
Sbjct: 117 HIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNV 164
>gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens]
Length = 248
Score = 37.4 bits (85), Expect = 0.011
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 24 EALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQID 83
EA+ R + + E R+QRE+ ++ Q + +R + E++L +
Sbjct: 8 EAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQ 67
Query: 84 GTLST----IEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQ 139
L+T +E +A + S +V+ N +A+K E M+L +I ++ E +
Sbjct: 68 ERLATALQKLEEAEKAADESERGMKVIEN-----RALKD-EEKMELQEI-----QLKEAK 116
Query: 140 DIAQEISEAFSQ----RVGFGDDFDEDELMAELEELEQEELNKKMTNI 183
IA+E + + V D + E AEL E + EL +++ N+
Sbjct: 117 HIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNV 164
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 37.4 bits (85), Expect = 0.011
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 26 LVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQN-KRAALQALKRKKRFEKQLTQI-- 82
++++ + + L KK E LEN I +E K QN + + +K K + EK + +
Sbjct: 493 ILKMEKENQRLSKKVEILENEIVQE-----KQSLQNCQNLSKDLMKEKAQLEKTIETLRE 547
Query: 83 --DGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNK-IDDLMQEITEQQ 139
+ + +E + E L + ++ + A+ EN L++ I + ++++ +
Sbjct: 548 NSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIE 607
Query: 140 DIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRL 185
++I + G+ +E E E E E L KK+TN+++
Sbjct: 608 FEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKI 653
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 37.4 bits (85), Expect = 0.011
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 26 LVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQN-KRAALQALKRKKRFEKQLTQI-- 82
++++ + + L KK E LEN I +E K QN + + +K K + EK + +
Sbjct: 493 ILKMEKENQRLSKKVEILENEIVQE-----KQSLQNCQNLSKDLMKEKAQLEKTIETLRE 547
Query: 83 --DGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNK-IDDLMQEITEQQ 139
+ + +E + E L + ++ + A+ EN L++ I + ++++ +
Sbjct: 548 NSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIE 607
Query: 140 DIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRL 185
++I + G+ +E E E E E L KK+TN+++
Sbjct: 608 FEKRQIKKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKI 653
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 36.6 bits (83), Expect = 0.019
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 23 QEALVRLRETEEMLGKKQEY-LENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQ 81
QE + RE EE+ +KQE L + ++EIAL R++R E++ Q
Sbjct: 767 QEEERKRREEEELARRKQEEALRRQREQEIAL-----------------RRQREEEERQQ 809
Query: 82 IDGTLSTIEFQREALENSHTNTEVLRNMGFAA--------KAMKSVHENMDLNKIDDLMQ 133
+ L +E +R E E+LR A +A + + EN L ++ +
Sbjct: 810 QEEALRRLEERRREEEERRKQEELLRKQEEEAAKWAREEEEAQRRLEENR-LRMEEEAAR 868
Query: 134 EITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSSL 193
E+++ ++ E Q+ + E + L++ +Q++ +M +PSSS
Sbjct: 869 LRHEEEERKRKELEVQRQKELMRQRQQQQEALRRLQQQQQQQQLAQM------KLPSSST 922
Query: 194 PAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQ 227
Q + S A S A + EE + +++
Sbjct: 923 WGQQSNTTACQSQATLSLAEIQKLEEERERQLRE 956
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 36.6 bits (83), Expect = 0.019
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 23 QEALVRLRETEEMLGKKQEY-LENRIQREIALAKKHGTQNKRAALQALKRKKRFEKQLTQ 81
QE + RE EE+ +KQE L + ++EIAL R++R E++ Q
Sbjct: 794 QEEERKRREEEELARRKQEEALRRQREQEIAL-----------------RRQREEEERQQ 836
Query: 82 IDGTLSTIEFQREALENSHTNTEVLRNMGFAA--------KAMKSVHENMDLNKIDDLMQ 133
+ L +E +R E E+LR A +A + + EN L ++ +
Sbjct: 837 QEEALRRLEERRREEEERRKQEELLRKQEEEAAKWAREEEEAQRRLEENR-LRMEEEAAR 895
Query: 134 EITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSSL 193
E+++ ++ E Q+ + E + L++ +Q++ +M +PSSS
Sbjct: 896 LRHEEEERKRKELEVQRQKELMRQRQQQQEALRRLQQQQQQQQLAQM------KLPSSST 949
Query: 194 PAQPNRKPGMSSTARRSRAASSQRAEEEDDDIKQ 227
Q + S A S A + EE + +++
Sbjct: 950 WGQQSNTTACQSQATLSLAEIQKLEEERERQLRE 983
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.124 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,908,692
Number of Sequences: 37866
Number of extensions: 326396
Number of successful extensions: 2646
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 2392
Number of HSP's gapped (non-prelim): 531
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.