Guide to the Human Genome
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Name: ZMYND12 Sequence: fasta or formatted (255aa) NCBI GI: 226246540
Description:

zinc finger, MYND-type containing 12 isoform 2

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt prot [365aa] zinc finger, MYND-type containing 12 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         31           7
 C cysteine            0.8          2           1
 D aspartate           5.1         13           1
 E glutamate           6.3         16           2
 F phenylalanine       3.9         10           1
 G glycine             3.9         10           2
 H histidine           4.3         11           1
 I isoleucine          6.3         16           1
 K lysine              4.7         12           2
 L leucine            13.3         34           2
 M methionine          2.4          6           2
 N asparagine          3.9         10           2
 P proline             1.2          3           1
 Q glutamine           5.9         15           2
 R arginine            3.5          9           1
 S serine              7.1         18           2
 T threonine           6.3         16           1
 V valine              2.7          7           1
 W tryptophan          1.2          3           1
 Y tyrosine            5.1         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, MYND-type containing 12 isoform 2 [Hom... 
ZMYND12               0.881   zinc finger, MYND-type containing 12 isoform 1 [Hom...
LRRC16B               0.017   leucine rich repeat containing 16B 
TTC12                 0.015   tetratricopeptide repeat domain 12 
C7orf20               0.010   hypothetical protein LOC51608 
BCL2L13               0.010   BCL2-like 13 (apoptosis facilitator) 
APPBP2                0.010   amyloid beta precursor protein-binding protein 2 [Ho...
RWDD2A                0.010   RWD domain containing 2A 
NPHP3                 0.008   nephrocystin 3 
SMC5                  0.008   SMC5 protein 
NCF2                  0.006   neutrophil cytosolic factor 2 
NCF2                  0.006   neutrophil cytosolic factor 2 
LRGUK                 0.006   leucine-rich repeats and guanylate kinase domain con...
JAKMIP2               0.006   Janus kinase and microtubule interacting protein 2 [...
SPO11                 0.006   meiotic recombination protein SPO11 isoform b 
IFT172                0.006   selective LIM binding factor homolog 
KIAA0892              0.006   hypothetical protein LOC23383 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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