Guide to the Human Genome
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Name: SPO11 Sequence: fasta or formatted (358aa) NCBI GI: 38201680
Description:

meiotic recombination protein SPO11 isoform b

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [396aa] meiotic recombination protein SPO11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         20           2
 C cysteine            2.2          8           1
 D aspartate           6.4         23           2
 E glutamate           3.4         12           2
 F phenylalanine       4.2         15           2
 G glycine             5.3         19           2
 H histidine           2.0          7           2
 I isoleucine          7.0         25           2
 K lysine              7.3         26           2
 L leucine            11.5         41           2
 M methionine          3.6         13           1
 N asparagine          3.6         13           1
 P proline             4.7         17           2
 Q glutamine           2.8         10           1
 R arginine            6.1         22           2
 S serine              8.4         30           2
 T threonine           5.9         21           2
 V valine              6.1         22           2
 W tryptophan          1.1          4           1
 Y tyrosine            2.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   meiotic recombination protein SPO11 isoform b 
SPO11                 0.971   meiotic recombination protein SPO11 isoform a 
PCDHGB5               0.010   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.010   protocadherin gamma subfamily B, 5 isoform 1 precurs...
DSC2                  0.007   desmocollin 2 isoform Dsc2b preproprotein 
DSC2                  0.007   desmocollin 2 isoform Dsc2a preproprotein 
PCDHGB2               0.006   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB1               0.006   protocadherin gamma subfamily B, 1 isoform 2 precurs...
PCDHGB6               0.006   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB6               0.006   protocadherin gamma subfamily B, 6 isoform 2 precurs...
PCDHGB1               0.006   protocadherin gamma subfamily B, 1 isoform 1 precurs...
PCDHGB2               0.006   protocadherin gamma subfamily B, 2 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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