Guide to the Human Genome
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Name: LGSN Sequence: fasta or formatted (509aa) NCBI GI: 221307485
Description:

lengsin, lens protein with glutamine synthetase domain isoform a

Referenced in:

Amino Acid Biosynthesis and Selected Derivatives
Crystallins and Other Eye Proteins

Other entries for this name:
alt prot [208aa] lengsin, lens protein with glutamine synthetase domain isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         34           2
 C cysteine            2.6         13           1
 D aspartate           5.1         26           1
 E glutamate           7.5         38           2
 F phenylalanine       5.5         28           2
 G glycine             5.1         26           1
 H histidine           2.2         11           1
 I isoleucine          5.1         26           2
 K lysine              5.7         29           2
 L leucine             9.2         47           2
 M methionine          2.8         14           1
 N asparagine          5.5         28           2
 P proline             4.3         22           2
 Q glutamine           2.9         15           1
 R arginine            5.5         28           2
 S serine              9.0         46           3
 T threonine           6.7         34           2
 V valine              5.1         26           1
 W tryptophan          0.8          4           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lengsin, lens protein with glutamine synthetase dom... 
LGSN                  0.334   lengsin, lens protein with glutamine synthetase dom...
GLUL                  0.009   glutamine synthetase 
GLUL                  0.009   glutamine synthetase 
GLUL                  0.009   glutamine synthetase 
CACNA1S               0.006   calcium channel, voltage-dependent, L type, alpha 1...
CLEC12A               0.005   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC12A               0.005   myeloid inhibitory C-type lectin-like receptor isofo...
CTAGE4                0.004   CTAGE family, member 4 
LOC441294             0.004   hypothetical protein LOC441294 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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