Search of human proteins with 224593268

Search of human proteins with 224593268

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224593268 intermediate filament tail domain containing 1
isoform 2 [Homo sapiens]
         (388 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224593268 intermediate filament tail domain containing 1 isof...   787   0.0  
gi|224593273 intermediate filament tail domain containing 1 isof...   768   0.0  
gi|224593275 intermediate filament tail domain containing 1 isof...   662   0.0  
gi|224593271 intermediate filament tail domain containing 1 isof...   631   0.0  
gi|27436951 lamin B2 [Homo sapiens]                                    75   8e-14
gi|5031875 lamin A/C isoform 2 [Homo sapiens]                          68   2e-11
gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]               68   2e-11
gi|5031877 lamin B1 [Homo sapiens]                                     65   8e-11
gi|27436948 lamin A/C isoform 3 [Homo sapiens]                         65   8e-11
gi|27734829 hypothetical protein LOC256329 [Homo sapiens]              49   1e-05
gi|218505835 membrane-associated guanylate kinase-related  3 iso...    32   0.75 
gi|155969695 membrane-associated guanylate kinase-related  3 iso...    32   0.75 
gi|111955326 MLX interacting protein [Homo sapiens]                    31   1.7  
gi|148612838 hypothetical protein LOC158358 [Homo sapiens]             31   2.2  
gi|190014591 vestigial like 4 isoform b [Homo sapiens]                 30   2.8  
gi|215422375 neural precursor cell expressed, developmentally do...    29   8.3  
gi|5453680 neural precursor cell expressed, developmentally down...    29   8.3  
gi|38505220 acyl-CoA synthetase medium-chain family member 5 [Ho...    29   8.3  
gi|5453830 origin recognition complex, subunit 2 [Homo sapiens]        29   8.3  
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi...    29   8.3  

>gi|224593268 intermediate filament tail domain containing 1 isoform
           2 [Homo sapiens]
          Length = 388

 Score =  787 bits (2032), Expect = 0.0
 Identities = 388/388 (100%), Positives = 388/388 (100%)

Query: 1   MLEGSWINRREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTI 60
           MLEGSWINRREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTI
Sbjct: 1   MLEGSWINRREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTI 60

Query: 61  STTGQLTSKATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHS 120
           STTGQLTSKATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHS
Sbjct: 61  STTGQLTSKATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHS 120

Query: 121 NYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQ 180
           NYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQ
Sbjct: 121 NYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQ 180

Query: 181 NVNGQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILC 240
           NVNGQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILC
Sbjct: 181 NVNGQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILC 240

Query: 241 KPNGQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQP 300
           KPNGQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQP
Sbjct: 241 KPNGQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQP 300

Query: 301 KKDISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRL 360
           KKDISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRL
Sbjct: 301 KKDISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRL 360

Query: 361 DRQPRTRSTRPNRASGSKKKKTSESQKQ 388
           DRQPRTRSTRPNRASGSKKKKTSESQKQ
Sbjct: 361 DRQPRTRSTRPNRASGSKKKKTSESQKQ 388


>gi|224593273 intermediate filament tail domain containing 1 isoform
           1 [Homo sapiens]
          Length = 409

 Score =  768 bits (1983), Expect = 0.0
 Identities = 379/380 (99%), Positives = 380/380 (100%)

Query: 9   RREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTS 68
           +REDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTS
Sbjct: 30  QREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTS 89

Query: 69  KATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLK 128
           KATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLK
Sbjct: 90  KATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLK 149

Query: 129 YFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTIS 188
           YFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTIS
Sbjct: 150 YFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTIS 209

Query: 189 LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 248
           LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA
Sbjct: 210 LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 269

Query: 249 WYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQ 308
           WYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQ
Sbjct: 270 WYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQ 329

Query: 309 VEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRS 368
           VEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRS
Sbjct: 330 VEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRS 389

Query: 369 TRPNRASGSKKKKTSESQKQ 388
           TRPNRASGSKKKKTSESQKQ
Sbjct: 390 TRPNRASGSKKKKTSESQKQ 409


>gi|224593275 intermediate filament tail domain containing 1 isoform
           4 [Homo sapiens]
          Length = 369

 Score =  662 bits (1707), Expect = 0.0
 Identities = 339/380 (89%), Positives = 340/380 (89%), Gaps = 40/380 (10%)

Query: 9   RREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTS 68
           +REDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTS
Sbjct: 30  QREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTS 89

Query: 69  KATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLK 128
           KATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLK
Sbjct: 90  KATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLK 149

Query: 129 YFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTIS 188
           YFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTIS
Sbjct: 150 YFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTIS 209

Query: 189 LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 248
           LYRFLPNIVMQANSTVT                                        AIA
Sbjct: 210 LYRFLPNIVMQANSTVT----------------------------------------AIA 229

Query: 249 WYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQ 308
           WYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQ
Sbjct: 230 WYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQ 289

Query: 309 VEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRS 368
           VEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRS
Sbjct: 290 VEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRS 349

Query: 369 TRPNRASGSKKKKTSESQKQ 388
           TRPNRASGSKKKKTSESQKQ
Sbjct: 350 TRPNRASGSKKKKTSESQKQ 369


>gi|224593271 intermediate filament tail domain containing 1 isoform
           3 [Homo sapiens]
          Length = 325

 Score =  631 bits (1627), Expect = 0.0
 Identities = 308/313 (98%), Positives = 310/313 (99%)

Query: 76  SRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 135
           SRV+   +ASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE
Sbjct: 13  SRVQTHHNASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILE 72

Query: 136 EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 195
           EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN
Sbjct: 73  EVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPN 132

Query: 196 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 255
           IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW
Sbjct: 133 IVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHW 192

Query: 256 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 315
           KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL
Sbjct: 193 KQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVL 252

Query: 316 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 375
           LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS
Sbjct: 253 LKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRAS 312

Query: 376 GSKKKKTSESQKQ 388
           GSKKKKTSESQKQ
Sbjct: 313 GSKKKKTSESQKQ 325


>gi|27436951 lamin B2 [Homo sapiens]
          Length = 600

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)

Query: 142 SSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGD-HILQQNVNGQTISLYRFLPNIVMQA 200
           +S+ G V I E++++G FV+L N+S DK+ ++G+  I +Q + G+ I+ Y+F P  +++A
Sbjct: 448 ASASGSVSIEEIDLEGKFVQLKNNS-DKDQSLGNWRIKRQVLEGEEIA-YKFTPKYILRA 505

Query: 201 NSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYT 251
              VTVWAA +   H PPS  +WK Q  +       T+L   +G+ +A  T
Sbjct: 506 GQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRT 556


>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
          Length = 572

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 146 GDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVT 205
           G V + EV+ +G FV+L N S +++ ++G+  +++      +  YRF P   ++A   VT
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKS-NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 496

Query: 206 VWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 248
           +WAA + A H PP+D +WK Q+ +       T L    G+ +A
Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539


>gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]
          Length = 664

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 146 GDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVT 205
           G V + EV+ +G FV+L N S +++ ++G+  +++      +  YRF P   ++A   VT
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKS-NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 496

Query: 206 VWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 248
           +WAA + A H PP+D +WK Q+ +       T L    G+ +A
Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539


>gi|5031877 lamin B1 [Homo sapiens]
          Length = 586

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 141 TSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQA 200
           ++S+ G+V I E++V G F++L N+S +++  +G   + + +   ++S Y++    V++A
Sbjct: 435 SASATGNVCIEEIDVDGKFIRLKNTS-EQDQPMGGWEMIRKIGDTSVS-YKYTSRYVLKA 492

Query: 201 NSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 248
             TVT+WAA +     PP+D +WK Q+ +    D   IL    G+ +A
Sbjct: 493 GQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVA 540


>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
          Length = 634

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 146 GDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVT 205
           G V + EV+ +G FV+L N S +++ ++G+  +++      +  YRF P   ++A   VT
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKS-NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT 496

Query: 206 VWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQ 245
           +WAA + A H PP+D +WK Q+ +       T L    G+
Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGE 536


>gi|27734829 hypothetical protein LOC256329 [Homo sapiens]
          Length = 634

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 27/101 (26%), Positives = 48/101 (47%)

Query: 148 VEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVTVW 207
           ++I  V+ +  FV++ N S +    +   +L+Q V G    LYRF P  ++     VTVW
Sbjct: 362 LKIVAVSCREKFVRIFNPSQESTADLSGMVLKQLVRGFPERLYRFPPGTLLAPRHHVTVW 421

Query: 208 AAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIA 248
             A+ +  +P      +E     +   C T+L  P G+ ++
Sbjct: 422 GEATRSAKKPLRASSSREPVPLLSIRGCATLLLSPKGEVLS 462


>gi|218505835 membrane-associated guanylate kinase-related  3
           isoform 1 [Homo sapiens]
          Length = 1481

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 170 EMAIGDHILQQNVNGQTIS--LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQD 227
           ++ +GDHI    VNGQ+I    +  +  ++  A  TVT+   A E  H PPS       +
Sbjct: 896 KLKVGDHI--SAVNGQSIVELSHDNIVQLIKDAGVTVTLTVIAEEEHHGPPSG-----TN 948

Query: 228 KFRASPDCITILCKPNGQAIAWYTP 252
             R SP    +  +P GQ+ A + P
Sbjct: 949 SARQSP---ALQHRPMGQSQANHIP 970


>gi|155969695 membrane-associated guanylate kinase-related  3
           isoform 2 [Homo sapiens]
          Length = 1125

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 170 EMAIGDHILQQNVNGQTIS--LYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQD 227
           ++ +GDHI    VNGQ+I    +  +  ++  A  TVT+   A E  H PPS       +
Sbjct: 896 KLKVGDHI--SAVNGQSIVELSHDNIVQLIKDAGVTVTLTVIAEEEHHGPPSG-----TN 948

Query: 228 KFRASPDCITILCKPNGQAIAWYTP 252
             R SP    +  +P GQ+ A + P
Sbjct: 949 SARQSP---ALQHRPMGQSQANHIP 970


>gi|111955326 MLX interacting protein [Homo sapiens]
          Length = 919

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 104 DYFLSLFGDSKKLTAHSNYTQKTLKYFSMILEEVGQ 139
           D   SL  ++ KLT+H+   QKT++Y + + +E GQ
Sbjct: 740 DMLNSLISNNSKLTSHAITLQKTVEYITKLQQERGQ 775


>gi|148612838 hypothetical protein LOC158358 [Homo sapiens]
          Length = 2103

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 28   GSVATTLPLSSSNSSGMPLGYYLSS-PQISRVTISTTGQLTS--KATVGSCSRVENSLDA 84
            G+V+T LP ++ N +  PL    S+ PQ      S +  LT   K +     + +N++ A
Sbjct: 1158 GTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSA 1217

Query: 85   SPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKT 126
            + FS+P         G       +L G +   ++ + + Q+T
Sbjct: 1218 ATFSLPSASPTISSTGQPLSSTTTLNGSTNPGSSFNCFAQQT 1259


>gi|190014591 vestigial like 4 isoform b [Homo sapiens]
          Length = 290

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 282 VFQWTASTATITKEKQDQPKKDISNYQVEQAQVLLKREKEIPPTVFPNRSPW-------- 333
           V    AS      EK++   +     Q       L   +  PP + P++  +        
Sbjct: 7   VLSRAASLVHADDEKREAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDED 66

Query: 334 --CQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRP 371
             C N +VS      +  PH   TA G   R PR RS  P
Sbjct: 67  LDCDNDHVSK--MSRIFNPHLNKTANGDCRRDPRERSRSP 104


>gi|215422375 neural precursor cell expressed, developmentally
           down-regulated 9 isoform 3 [Homo sapiens]
          Length = 834

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 55  ISRVTISTTGQLTSKATVGSCSRVENSLDASP 86
           I+R++ S+TG   S  +  S S  E+SL ASP
Sbjct: 365 INRLSFSSTGSTRSNMSTSSTSSKESSLSASP 396


>gi|5453680 neural precursor cell expressed, developmentally
           down-regulated 9 isoform 1 [Homo sapiens]
          Length = 834

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 55  ISRVTISTTGQLTSKATVGSCSRVENSLDASP 86
           I+R++ S+TG   S  +  S S  E+SL ASP
Sbjct: 365 INRLSFSSTGSTRSNMSTSSTSSKESSLSASP 396


>gi|38505220 acyl-CoA synthetase medium-chain family member 5 [Homo
           sapiens]
          Length = 579

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 185 QTISLYRFL-PNIVMQANSTVTVWAAASEAKHQPPSDFLW 223
           + ISL R L P     A+  + VW+   EA H+PP+   W
Sbjct: 40  EAISLGRQLVPEYFNFAHDVLDVWSRLEEAGHRPPNPAFW 79


>gi|5453830 origin recognition complex, subunit 2 [Homo sapiens]
          Length = 577

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 117 TAHSNYTQKTLKYFSMILEEVGQFTSSSLGDV-EIAEVNVKGLFVKLINSSLDKE 170
           T +S YT++T    S+++++ G    SSL  V      N +G+F  LI   LD +
Sbjct: 449 TTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQ 503


>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
           sapiens]
          Length = 783

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 263 DADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVLLKREKEI 322
           DA +E +       T RK+         T  KEK+++PK D +    E+ + +  + K++
Sbjct: 8   DAGLESDTAMKKGETLRKQ---------TEEKEKKEKPKSDKTEEIAEEEETVFPKAKQV 58

Query: 323 PPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRASGSKKKKT 382
                P+                P  +         + D  P+T+S R  +    KK  +
Sbjct: 59  KKKAEPS----------EVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVS 108

Query: 383 SESQK 387
           S+++K
Sbjct: 109 SKTKK 113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.128    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,122,117
Number of Sequences: 37866
Number of extensions: 682969
Number of successful extensions: 1500
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 21
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.