Guide to the Human Genome
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Name: IFLTD1 Sequence: fasta or formatted (369aa) NCBI GI: 224593275
Description:

intermediate filament tail domain containing 1 isoform 4

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [388aa] intermediate filament tail domain containing 1 isoform 2
alt prot [325aa] intermediate filament tail domain containing 1 isoform 3
alt prot [409aa] intermediate filament tail domain containing 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         19           1
 C cysteine            1.1          4           1
 D aspartate           4.6         17           1
 E glutamate           5.7         21           2
 F phenylalanine       3.3         12           1
 G glycine             4.6         17           2
 H histidine           1.9          7           1
 I isoleucine          4.6         17           1
 K lysine              8.7         32           4
 L leucine             7.0         26           2
 M methionine          2.2          8           1
 N asparagine          4.6         17           1
 P proline             5.7         21           2
 Q glutamine           7.0         26           2
 R arginine            4.1         15           1
 S serine             11.7         43           3
 T threonine           7.3         27           2
 V valine              6.5         24           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.0         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intermediate filament tail domain containing 1 isof... 
IFLTD1                0.972   intermediate filament tail domain containing 1 isof...
IFLTD1                0.891   intermediate filament tail domain containing 1 isof...
IFLTD1                0.699   intermediate filament tail domain containing 1 isof...
LMNB2                 0.028   lamin B2 
LMNB1                 0.014   lamin B1 
LMNA                  0.014   lamin A/C isoform 2 
LMNA                  0.014   lamin A/C isoform 1 precursor 
LMNA                  0.013   lamin A/C isoform 3 
CSMD3                 0.011   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.011   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.011   CUB and Sushi multiple domains 3 isoform 1 
MLXIP                 0.008   MLX interacting protein 
KIF15                 0.008   kinesin family member 15 
C11orf35              0.008   hypothetical protein LOC256329 
KIAA2026              0.008   hypothetical protein LOC158358 
CYTSA                 0.007   cytospin A 
CYTSA                 0.007   cytospin A 
EPS15                 0.007   epidermal growth factor receptor pathway substrate ...
EPS15                 0.007   epidermal growth factor receptor pathway substrate 15...
VGLL4                 0.007   vestigial like 4 isoform b 
NRG1                  0.007   neuregulin 1 isoform ndf43b 
NRG1                  0.007   neuregulin 1 isoform HRG-gamma 
NRG1                  0.007   neuregulin 1 isoform HRG-beta2b 
NRG1                  0.007   neuregulin 1 isoform HRG-beta1b 
NRG1                  0.007   neuregulin 1 isoform HRG-beta3 
NRG1                  0.007   neuregulin 1 isoform HRG-beta2 
NRG1                  0.007   neuregulin 1 isoform HRG-beta1 
NRG1                  0.007   neuregulin 1 isoform HRG-alpha 
NRG1                  0.007   neuregulin 1 isoform ndf43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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