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Search of human proteins with 223671925
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
sapiens]
(392 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo sapi... 790 0.0
gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo sapi... 400 e-111
gi|239754690 PREDICTED: hypothetical protein [Homo sapiens] 32 0.76
gi|239749238 PREDICTED: hypothetical protein [Homo sapiens] 32 0.76
gi|239743330 PREDICTED: hypothetical protein XP_002342792 [Homo ... 32 0.76
gi|239509013 PREDICTED: hypothetical protein [Homo sapiens] 32 0.76
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 32 0.76
gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo ... 31 1.7
gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo ... 31 1.7
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 31 2.2
gi|20302139 cystatin F [Homo sapiens] 31 2.2
gi|163659920 pannexin 2 isoform 1 [Homo sapiens] 30 2.9
gi|237757297 pannexin 2 isoform 2 [Homo sapiens] 30 2.9
gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens] 30 3.8
gi|157785645 SPEG complex locus [Homo sapiens] 30 3.8
gi|71061468 centromere protein E [Homo sapiens] 30 4.9
gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens] 30 4.9
gi|112807234 G protein-coupled receptor, family C, group 6, memb... 30 4.9
gi|160420317 filamin A, alpha isoform 2 [Homo sapiens] 29 6.4
gi|116063573 filamin A, alpha isoform 1 [Homo sapiens] 29 6.4
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] 29 6.4
gi|38372917 C1q and tumor necrosis factor related protein 1 isof... 29 8.4
gi|13569944 C1q and tumor necrosis factor related protein 1 isof... 29 8.4
>gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
sapiens]
Length = 392
Score = 790 bits (2041), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA
Sbjct: 1 MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
Query: 61 RRTLKEWTLQVSPFGRLRARLPCHLAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQV 120
RRTLKEWTLQVSPFGRLRARLPCHLAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQV
Sbjct: 61 RRTLKEWTLQVSPFGRLRARLPCHLAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQV 120
Query: 121 KYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIETEHGT 180
KYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIETEHGT
Sbjct: 121 KYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIETEHGT 180
Query: 181 SILQSVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLK 240
SILQSVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLK
Sbjct: 181 SILQSVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLK 240
Query: 241 AKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQ 300
AKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQ
Sbjct: 241 AKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQ 300
Query: 301 LGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQ 360
LGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQ
Sbjct: 301 LGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQ 360
Query: 361 ASKREKWIKADAPKGTVSFRRQSWFQSLKLQD 392
ASKREKWIKADAPKGTVSFRRQSWFQSLKLQD
Sbjct: 361 ASKREKWIKADAPKGTVSFRRQSWFQSLKLQD 392
>gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo
sapiens]
Length = 275
Score = 400 bits (1028), Expect = e-111
Identities = 205/208 (98%), Positives = 208/208 (100%)
Query: 185 SVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYL 244
+++GQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYL
Sbjct: 68 TLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYL 127
Query: 245 YTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKV 304
YTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKV
Sbjct: 128 YTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKV 187
Query: 305 ELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKR 364
ELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKR
Sbjct: 188 ELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKR 247
Query: 365 EKWIKADAPKGTVSFRRQSWFQSLKLQD 392
EKWIKADAPKGTVSFRRQSWFQSLKLQD
Sbjct: 248 EKWIKADAPKGTVSFRRQSWFQSLKLQD 275
Score = 168 bits (425), Expect = 9e-42
Identities = 99/244 (40%), Positives = 125/244 (51%), Gaps = 33/244 (13%)
Query: 1 MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA
Sbjct: 1 MLAPCSGWELGCFRLCLRQVRLWAGAGRWACWACQARPYSSGGSERWPGSETEVPPPGPA 60
Query: 61 RRTLKEWTLQ------------VSPFGRLRARLPCHLAVRPLDPLTYPDGDRVLVAVCGV 108
RRTLKEWTLQ V G + + H + + + G V V+
Sbjct: 61 RRTLKEWTLQGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVST--- 117
Query: 109 EGGVRGLDGLQVKYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIE 168
GL + Y E + D + K G S SGC+K + +
Sbjct: 118 ---EDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQ 174
Query: 169 G---------DNCKIETEHGTSILQSVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSA 219
G ++++ G+ I++ + H+Q G +V N ++H + +
Sbjct: 175 GAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDV------NSEVHVQEMAE 228
Query: 220 VTID 223
V D
Sbjct: 229 VRKD 232
>gi|239754690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 77 LRARLPCH-LAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKYDE 124
L A+L CH L V +D +PDG+ V +++ EGG G G Q +++E
Sbjct: 32 LLAQLVCHGLVVGLVDVALFPDGNGVEMSLQRAEGGRPGRGGRQRRWEE 80
>gi|239749238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 77 LRARLPCH-LAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKYDE 124
L A+L CH L V +D +PDG+ V +++ EGG G G Q +++E
Sbjct: 32 LLAQLVCHGLVVGLVDVALFPDGNGVEMSLQRAEGGRPGRGGRQRRWEE 80
>gi|239743330 PREDICTED: hypothetical protein XP_002342792 [Homo
sapiens]
Length = 88
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 77 LRARLPCH-LAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKYDE 124
L A+L CH L V +D +PDG+ V +++ EGG G G Q +++E
Sbjct: 32 LLAQLVCHGLVVGLVDVALFPDGNGVEMSLQRAEGGRPGRGGRQRRWEE 80
>gi|239509013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 77 LRARLPCH-LAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKYDE 124
L A+L CH L V +D +PDG+ V +++ EGG G G Q +++E
Sbjct: 32 LLAQLVCHGLVVGLVDVALFPDGNGVEMSLQRAEGGRPGRGGRQRRWEE 80
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 32.3 bits (72), Expect = 0.76
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 14 RLCLRQVRLWAG--AGRWACW----ACQARPYSSGGSERWPGSETEVPPPGPARRTLKEW 67
RLC QV G AG A W + R S G+ P + PPPGPA +W
Sbjct: 70 RLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPGPAAAPEGDW 129
Query: 68 TLQVSPFGRLRAR 80
+ G L R
Sbjct: 130 ARLLEQMGALAVR 142
>gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
sapiens]
Length = 330
Score = 31.2 bits (69), Expect = 1.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 274 GNITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVD 333
G I SS G + D + ++ E +SH G +I + Q H Q G V
Sbjct: 41 GRIAAYSSPGLVAEEGTHSIGDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHV- 99
Query: 334 VNSEVHVQ-EMAEVRKDD 350
++HVQ + EV +DD
Sbjct: 100 ---QLHVQLKQVEVEEDD 114
>gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo
sapiens]
Length = 330
Score = 31.2 bits (69), Expect = 1.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 274 GNITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVD 333
G I SS G + D + ++ E +SH G +I + Q H Q G V
Sbjct: 41 GRIAAYSSPGLVAEEGTHSIGDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHV- 99
Query: 334 VNSEVHVQ-EMAEVRKDD 350
++HVQ + EV +DD
Sbjct: 100 ---QLHVQLKQVEVEEDD 114
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 200 VICLGTVYGNIDIHASDKSAVTIDKLQGS--SVTVSTEDGLLKAKYLYTESSFLSSAAGD 257
+IC G+ +++ ++ +QG+ + T S EDGL K + ES + + G
Sbjct: 1272 LICRALPRGSPHSDLKERTVLSGSIMQGTPRATTESFEDGLKYPKQIKRESPPIRAFEGA 1331
Query: 258 ITLGSVHGNITLQSKMG 274
IT G + IT +MG
Sbjct: 1332 ITKGKPYDGITTIKEMG 1348
>gi|20302139 cystatin F [Homo sapiens]
Length = 167
Score = 30.8 bits (68), Expect = 2.2
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 121 KYDEDLEEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIETEH 178
K++ +M + ++ +A V++ LK+ L+++ + C K Q + D+C +T H
Sbjct: 81 KFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNH 138
>gi|163659920 pannexin 2 isoform 1 [Homo sapiens]
Length = 677
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 36 ARPYSSGGSERWPG-SETEVPPPGPARRTLKEWTLQVSPF 74
A Y GG + PG + PPP P ++ + ++L V P+
Sbjct: 481 AHHYKGGGGDPGPGPAPAPAPPPAPDKKHARHFSLDVHPY 520
>gi|237757297 pannexin 2 isoform 2 [Homo sapiens]
Length = 643
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 36 ARPYSSGGSERWPG-SETEVPPPGPARRTLKEWTLQVSPF 74
A Y GG + PG + PPP P ++ + ++L V P+
Sbjct: 481 AHHYKGGGGDPGPGPAPAPAPPPAPDKKHARHFSLDVHPY 520
>gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]
Length = 232
Score = 30.0 bits (66), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 221 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNI 276
+ID L GS T LL Y++TE SFL G+ITL ++ + + I
Sbjct: 50 SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRI 106
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.0 bits (66), Expect = 3.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 83 CHLAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKYDEDLEEMAIVSDTIHPQAS 141
CHL +RP+ L +RV V + GL +E+LEE+ V + P+ S
Sbjct: 1886 CHLVLRPIPELLRAPPERVWVTMPRRPPPSGGLSSSSDSEEEELEELPSVPRPLQPEFS 1944
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 29.6 bits (65), Expect = 4.9
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 316 KVPSSLQAHLQLSGKEVDVNSEVHVQ-EMAEVRKDDVVTVTGLMNQASKREK 366
KVP L +L+L GK D+ E++ + E E +++V+ ++ L + S+ E+
Sbjct: 707 KVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVER 758
>gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]
Length = 276
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 221 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITL 260
+ID L GS T LL Y++TE SFL G+ITL
Sbjct: 50 SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITL 90
>gi|112807234 G protein-coupled receptor, family C, group 6, member
A [Homo sapiens]
Length = 926
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 232 VSTEDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQ 291
++T+ LK Y Y+ S S A +L S+ GN+T+ T SSSG K++T Q
Sbjct: 843 INTKSAFLKMIYSYSSHSVSSIALSPASLDSMSGNVTM-------TNPSSSG--KSATWQ 893
Query: 292 GAIDV 296
+ D+
Sbjct: 894 KSKDL 898
>gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]
Length = 2647
Score = 29.3 bits (64), Expect = 6.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 139 QASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIE 175
+ V VN P +F +D K G ++VQ + + C +E
Sbjct: 684 KTGVAVNKPAEFTVDAKHGGKAPLRVQVQDNEGCPVE 720
>gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]
Length = 2639
Score = 29.3 bits (64), Expect = 6.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 139 QASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIE 175
+ V VN P +F +D K G ++VQ + + C +E
Sbjct: 684 KTGVAVNKPAEFTVDAKHGGKAPLRVQVQDNEGCPVE 720
>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
Length = 880
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 79 ARLPCHLAVRPLDPLTYPDGDRVLVAVCGVEGG-VRGLDGLQVKYDED 125
+R+P LA L P P DR+L AV G +GG +DG V +E+
Sbjct: 793 SRIPRPLAYVFLGPARQPPKDRLLRAVLGSKGGEASRVDGASVGEEEE 840
>gi|38372917 C1q and tumor necrosis factor related protein 1 isoform
1 [Homo sapiens]
Length = 281
Score = 28.9 bits (63), Expect = 8.4
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 38 PYSSGGSERWPGSETEVPPPGPARRTLKEWTLQVSPFGRLRARLPCHLAVRPLDPLT--Y 95
P+ G + W G+E PP A R +E + P LP +R DP T Y
Sbjct: 28 PHVQGEQQEWEGTEELPSPPDHAERA-EEQHEKYRP--SQDQGLPASRCLRCCDPGTSMY 84
Query: 96 PDG--DRVLVAVCGVEGGVRGLDGLQVKY 122
P ++ + + E G RG GLQ KY
Sbjct: 85 PATAVPQINITILKGEKGDRGDRGLQGKY 113
>gi|13569944 C1q and tumor necrosis factor related protein 1 isoform
1 [Homo sapiens]
Length = 281
Score = 28.9 bits (63), Expect = 8.4
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 38 PYSSGGSERWPGSETEVPPPGPARRTLKEWTLQVSPFGRLRARLPCHLAVRPLDPLT--Y 95
P+ G + W G+E PP A R +E + P LP +R DP T Y
Sbjct: 28 PHVQGEQQEWEGTEELPSPPDHAERA-EEQHEKYRP--SQDQGLPASRCLRCCDPGTSMY 84
Query: 96 PDG--DRVLVAVCGVEGGVRGLDGLQVKY 122
P ++ + + E G RG GLQ KY
Sbjct: 85 PATAVPQINITILKGEKGDRGDRGLQGKY 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,062,651
Number of Sequences: 37866
Number of extensions: 691785
Number of successful extensions: 2142
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2127
Number of HSP's gapped (non-prelim): 26
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.