Guide to the Human Genome
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Name: LOC100287239 Sequence: fasta or formatted (88aa) NCBI GI: 239743330
Description:

PREDICTED: hypothetical protein XP_002342792

Not currently referenced in the text

Other entries for this name:
alt mRNA {88aa} PREDICTED: hypothetical protein
alt mRNA {88aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          5           1
 C cysteine            2.3          2           1
 D aspartate           4.5          4           1
 E glutamate           4.5          4           2
 F phenylalanine       2.3          2           1
 G glycine            12.5         11           2
 H histidine           2.3          2           1
 I isoleucine          1.1          1           1
 K lysine              6.8          6           3
 L leucine            13.6         12           3
 M methionine          2.3          2           1
 N asparagine          3.4          3           1
 P proline             3.4          3           1
 Q glutamine           4.5          4           1
 R arginine           10.2          9           2
 S serine              3.4          3           1
 T threonine           2.3          2           1
 V valine             13.6         12           2
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342792 
LOC100293942          1.000   PREDICTED: hypothetical protein 
LOC100287239          1.000   PREDICTED: hypothetical protein 
LOC100287239          1.000   PREDICTED: hypothetical protein 
FAM185A               0.045   hypothetical protein LOC222234 isoform 1 
DHX33                 0.019   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
DKFZp686L13185        0.006   PREDICTED: hypothetical protein LOC401287 
LOC651986             0.006   PREDICTED: similar to forkhead box L2 
DKFZp686L13185        0.006   PREDICTED: hypothetical protein LOC401287 
LOC100288524          0.006   PREDICTED: hypothetical protein XP_002342748 
DKFZp686L13185        0.006   PREDICTED: hypothetical protein LOC401287 
TYW1B                 0.006   tRNA-yW synthesizing protein 1 homolog B isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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