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Search of human proteins with 222136622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222136622 prostate and testis expressed 3 [Homo sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 215 5e-57
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 55 2e-08
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo... 55 2e-08
gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo... 55 2e-08
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 55 2e-08
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo... 55 2e-08
gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo... 55 2e-08
gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo... 55 2e-08
gi|19923082 expressed in prostate and testis [Homo sapiens] 53 5e-08
gi|221554530 prostate and testis expressed 4 [Homo sapiens] 49 9e-07
gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens] 35 0.013
gi|224589135 RGM domain family, member B [Homo sapiens] 33 0.037
gi|30794264 glycosylphosphatidylinositol anchored high density l... 30 0.32
gi|187829185 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|187829183 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|10835165 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|42716299 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|187829070 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|42761474 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|42716302 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|187828910 CD59 antigen preproprotein [Homo sapiens] 30 0.41
gi|190886439 hypothetical protein LOC138240 [Homo sapiens] 30 0.41
gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens] 29 0.70
gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens] 29 0.92
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 28 2.1
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 28 2.1
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 28 2.1
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 27 2.7
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 27 2.7
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 27 2.7
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 215 bits (548), Expect = 5e-57
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNKHFLFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNT 60
MNKHFLFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNT
Sbjct: 1 MNKHFLFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNT 60
Query: 61 LQISYMVCQKFCRDMTFDLRNRTYVHTCCNYNYCNFKL 98
LQISYMVCQKFCRDMTFDLRNRTYVHTCCNYNYCNFKL
Sbjct: 61 LQISYMVCQKFCRDMTFDLRNRTYVHTCCNYNYCNFKL 98
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 131 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 190
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 191 SHGTRMQIICCRNQSFCN 208
>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
sapiens]
Length = 176
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 97 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 156
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 157 SHGTRMQIICCRNQSFCN 174
>gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo
sapiens]
Length = 265
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 186 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 245
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 246 SHGTRMQIICCRNQSFCN 263
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 91 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 150
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 151 SHGTRMQIICCRNQSFCN 168
>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
sapiens]
Length = 195
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 116 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 175
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 176 SHGTRMQIICCRNQSFCN 193
>gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo
sapiens]
Length = 121
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 42 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 101
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 102 SHGTRMQIICCRNQSFCN 119
>gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo
sapiens]
Length = 246
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 19 TSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMT-F 77
T L C TC +C RG G C Q + CML +I++ LQ C+ C M F
Sbjct: 167 TILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLF 226
Query: 78 DLRNRTYVHTCCNYNYCN 95
R + C N ++CN
Sbjct: 227 SHGTRMQIICCRNQSFCN 244
>gi|19923082 expressed in prostate and testis [Homo sapiens]
Length = 126
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 21 LQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRN-TLQISYMVCQKFCRDMTFDL 79
+QC CHL+ ++C RG G+CTA EACM+ R+++R+ +++M C K C D+ +
Sbjct: 46 VQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-GI 104
Query: 80 RNRTYV---HTCCNYNYCN 95
R Y+ C +++ CN
Sbjct: 105 RWSVYLVNFRCCRSHDLCN 123
>gi|221554530 prostate and testis expressed 4 [Homo sapiens]
Length = 98
Score = 48.9 bits (115), Expect = 9e-07
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 6 LFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISY 65
L + L + + V L+C TC + T +C G G C A++ E C ++ + S
Sbjct: 8 LLVSLSFLYLKEVMGLKCNTC-IYTEGWKCMAGRGTCIAKENELCSTTAYFRGDKHMYST 66
Query: 66 MVCQKFCRDMTFDLRNRTYVHTCCNYNYCN 95
+C+ CR+ R V CC+ N+CN
Sbjct: 67 HMCKYKCREEESSKRGLLRVTLCCDRNFCN 96
>gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens]
Length = 201
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 25 TCHLRTRTDR---CRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMTFDLRN 81
TCH D C G CT CM++ IY ++ C ++ + RN
Sbjct: 27 TCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGCGQYISYRCQEKRN 86
Query: 82 R-----TYVHTCCNYNYCN 95
Y CC Y+YCN
Sbjct: 87 TYFAEYWYQAQCCQYDYCN 105
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 19 TSLQCITCHLRTRTD-------RCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF 71
T +T HL + D + R + CT + +AC +Y L IS ++ Q+
Sbjct: 102 TDFVSLTSHLNSAVDGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRN 161
Query: 72 C-RDMTFDLRNRTYVHTCCNYN 92
C +D N H CNY+
Sbjct: 162 CSKDGPTSSTNPEVTHDPCNYH 183
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 21 LQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIY---QRNTLQISYMVCQKFCRDMTF 77
L+C TC R +RC G+ C L + + L C C+ +T
Sbjct: 63 LRCYTCKSLPRDERCNL---TQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITK 119
Query: 78 DLRNRTYVHTCCNYNYCN 95
+ TCC + CN
Sbjct: 120 TVEGTQVTMTCCQSSLCN 137
>gi|187829185 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|187829183 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|10835165 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|42716299 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|187829070 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|42761474 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|42716302 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|187828910 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 20 SLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKF----CRDM 75
SLQC C T C+ V + +AC++ + LQ+ Y C KF D+
Sbjct: 25 SLQCYNCP--NPTADCKTA--VNCSSDFDACLITKA----GLQV-YNKCWKFEHCNFNDV 75
Query: 76 TFDLRNRTYVHTCCNYNYCNF 96
T LR + CC + CNF
Sbjct: 76 TTRLRENELTYYCCKKDLCNF 96
>gi|190886439 hypothetical protein LOC138240 [Homo sapiens]
Length = 161
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 18 VTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQK---FCRD 74
V L C C+L C G C A+ G+ C Q S C K C
Sbjct: 76 VGGLICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFK 135
Query: 75 MTFDLR----NRTYVHTCCNYNYCNF 96
T R + CCN++ CNF
Sbjct: 136 STLVKRILQLHELVTTHCCNHSLCNF 161
>gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
Length = 125
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 42 CTAQKGEACMLLRIYQRNTLQISYMVC---QKFCRDMTFDLRNR----TYVHTCCNYNYC 94
C + G+ C+ Y S + C ++ C++ F+ NR TY TCCN + C
Sbjct: 39 CRLEPGQQCLTTHAYLGKMWVFSNLRCGTPEEPCQE-AFNQTNRKLGLTYNTTCCNKDNC 97
Query: 95 N 95
N
Sbjct: 98 N 98
>gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens]
Length = 147
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 21 LQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQKFCRDMTFDLR 80
L+C C L T+ C G +C G +C+ L +++N+ MV ++ D
Sbjct: 57 LRCYRCLLETKELGCLLGSDICLTPAGSSCITL--HKKNSSGSDVMVSDCRSKEQMSDCS 114
Query: 81 N 81
N
Sbjct: 115 N 115
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 8 LFLLYCLIVAVTSLQCITCHLRTRT-DRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYM 66
L L+ +++ + Q + CH+ D C C A CM R Y T
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMR-CPAMVAY-CMTTRTYYTPTRMKVSK 62
Query: 67 VCQKFCRDMTFD-LRNRTYVHTCCNYNYCN 95
C C + +D +CC Y+ CN
Sbjct: 63 SCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 8 LFLLYCLIVAVTSLQCITCHLRTRT-DRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYM 66
L L+ +++ + Q + CH+ D C C A CM R Y T
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMR-CPAMVAY-CMTTRTYYTPTRMKVSK 62
Query: 67 VCQKFCRDMTFD-LRNRTYVHTCCNYNYCN 95
C C + +D +CC Y+ CN
Sbjct: 63 SCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 8 LFLLYCLIVAVTSLQCITCHLRTRT-DRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYM 66
L L+ +++ + Q + CH+ D C C A CM R Y T
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMR-CPAMVAY-CMTTRTYYTPTRMKVSK 62
Query: 67 VCQKFCRDMTFD-LRNRTYVHTCCNYNYCN 95
C C + +D +CC Y+ CN
Sbjct: 63 SCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 LFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISY 65
L L LL V Q + CH+ + C V A + C++ R + +
Sbjct: 3 LLLVLLLLAAVCAALAQALHCHVCCGHEHCESL--VECAPTDKYCVITRATSPGGILVMK 60
Query: 66 MVCQKFCRDMTFDLRNRTYVHTCCNYNYCN 95
C C + T +R +CC + CN
Sbjct: 61 S-CSPTCPNSTVSSDSRALSVSCCQGSQCN 89
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 LFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISY 65
L L LL V Q + CH+ + C V A + C++ R + +
Sbjct: 3 LLLVLLLLAAVCAALAQALHCHVCCGHEHCESL--VECAPTDKYCVITRATSPGGILVMK 60
Query: 66 MVCQKFCRDMTFDLRNRTYVHTCCNYNYCN 95
C C + T +R +CC + CN
Sbjct: 61 S-CSPTCPNSTVSSDSRALSVSCCQGSQCN 89
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 LFLFLLYCLIVAVTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISY 65
L L LL V Q + CH+ + C V A + C++ R + +
Sbjct: 3 LLLVLLLLAAVCAALAQALHCHVCCGHEHCESL--VECAPTDKYCVITRATSPGGILVMK 60
Query: 66 MVCQKFCRDMTFDLRNRTYVHTCCNYNYCN 95
C C + T +R +CC + CN
Sbjct: 61 S-CSPTCPNSTVSSDSRALSVSCCQGSQCN 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.339 0.144 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,520,339
Number of Sequences: 37866
Number of extensions: 129279
Number of successful extensions: 587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 34
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.