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Search of human proteins with 22202637
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22202637 prefoldin subunit 5 isoform gamma [Homo sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22202637 prefoldin subunit 5 isoform gamma [Homo sapiens] 214 1e-56
gi|22202633 prefoldin subunit 5 isoform alpha [Homo sapiens] 192 4e-50
gi|212276088 leucine rich repeat (in FLII) interacting protein 1... 30 0.42
gi|212276078 leucine rich repeat (in FLII) interacting protein 1... 30 0.42
gi|98991769 taspase 1 precursor [Homo sapiens] 29 0.71
gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo... 28 1.2
gi|83716024 kinesin family member 21B [Homo sapiens] 28 1.2
gi|55749932 desmin [Homo sapiens] 28 2.1
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 27 2.7
gi|34304360 nephrocystin 3 [Homo sapiens] 27 4.6
gi|23503283 TBC1 domain family, member 21 [Homo sapiens] 27 4.6
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 26 6.0
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 26 6.0
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 26 6.0
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 26 6.0
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 26 6.0
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 26 6.0
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 26 6.0
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens] 26 6.0
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 26 6.0
gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens] 26 6.0
gi|110815815 centlein isoform 1 [Homo sapiens] 26 6.0
gi|167555106 centlein isoform 2 [Homo sapiens] 26 6.0
gi|21450705 leucine rich repeat containing 45 [Homo sapiens] 26 6.0
gi|51972236 zinc finger protein 705A [Homo sapiens] 26 6.0
gi|157426887 dedicator of cytokinesis 6 [Homo sapiens] 26 6.0
gi|167614504 laminin, beta 1 precursor [Homo sapiens] 26 7.9
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 26 7.9
gi|7705415 hook homolog 1 [Homo sapiens] 26 7.9
gi|4557255 adenylate cyclase 7 [Homo sapiens] 26 7.9
>gi|22202637 prefoldin subunit 5 isoform gamma [Homo sapiens]
Length = 109
Score = 214 bits (545), Expect = 1e-56
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MAQSINITELNLPQLEMLKNQLDQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKR 60
MAQSINITELNLPQLEMLKNQLDQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKR
Sbjct: 1 MAQSINITELNLPQLEMLKNQLDQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKR 60
Query: 61 KIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA 109
KIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
Sbjct: 61 KIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA 109
>gi|22202633 prefoldin subunit 5 isoform alpha [Homo sapiens]
Length = 154
Score = 192 bits (489), Expect = 4e-50
Identities = 109/154 (70%), Positives = 109/154 (70%), Gaps = 45/154 (29%)
Query: 1 MAQSINITELNLPQLEMLKNQLDQ------------------------------------ 24
MAQSINITELNLPQLEMLKNQLDQ
Sbjct: 1 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK 60
Query: 25 ---------MYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA 75
MYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
Sbjct: 61 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA 120
Query: 76 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA 109
LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
Sbjct: 121 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA 154
>gi|212276088 leucine rich repeat (in FLII) interacting protein 1
isoform 2 [Homo sapiens]
Length = 394
Score = 30.0 bits (66), Expect = 0.42
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 9 ELNLPQLEMLKNQLDQMYVPGKLHDV--EHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLT 66
E L Q++ LK QL++ GKL ++ E +++ GT +V DA R+I L
Sbjct: 252 ECLLEQIKKLKGQLEERQKIGKLDNLRSEDDVLENGTDMHVMDLQRDA----NRQISDLK 307
Query: 67 KQMEKIQPALQEKHAMKQAVMEMMSQ 92
++ K + QE A++Q V+ + SQ
Sbjct: 308 FKLAKSE---QEITALEQNVIRLESQ 330
>gi|212276078 leucine rich repeat (in FLII) interacting protein 1
isoform 1 [Homo sapiens]
Length = 640
Score = 30.0 bits (66), Expect = 0.42
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 9 ELNLPQLEMLKNQLDQMYVPGKLHDV--EHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLT 66
E L Q++ LK QL++ GKL ++ E +++ GT +V DA R+I L
Sbjct: 498 ECLLEQIKKLKGQLEERQKIGKLDNLRSEDDVLENGTDMHVMDLQRDA----NRQISDLK 553
Query: 67 KQMEKIQPALQEKHAMKQAVMEMMSQ 92
++ K + QE A++Q V+ + SQ
Sbjct: 554 FKLAKSE---QEITALEQNVIRLESQ 576
>gi|98991769 taspase 1 precursor [Homo sapiens]
Length = 420
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 37 VLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEM 89
VL+ G GY+ E A++ K KR K +EK+Q A+ A++E+
Sbjct: 44 VLVHAGAGYHSESKAKEYKHVCKRACQ---KAIEKLQAGALATDAVTAALVEL 93
>gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo
sapiens]
Length = 1724
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 36 HVLIDVGTG----YYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS 91
H L+D G + ++KT+EDA ++F+ I+ L K Q L +H +A ++ S
Sbjct: 189 HFLLDDGMETRRQFAIKKTSEDASEYFENYIEELKK-----QGFLLREHFTPEAT-QLAS 242
Query: 92 QKIQQL 97
+++Q L
Sbjct: 243 EQLQAL 248
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 14 QLEMLKNQLDQMYV--PGKLHDVE----HVLIDVGT-GYYVEKTAEDAKDFFKRKIDFLT 66
+L+ LK+Q ++ + K+ D + VL ++ T Y E+ A K +++++ +
Sbjct: 659 RLQTLKHQYEEKLILLQNKIRDTQLERDRVLQNLSTMECYTEEKANKIKADYEKRLREMN 718
Query: 67 KQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAK 108
+ ++K+Q A Q++HA +++++L A A AK
Sbjct: 719 RDLQKLQ-AAQKEHARLLKNQSRYERELKKLQAEVAEMKKAK 759
>gi|55749932 desmin [Homo sapiens]
Length = 470
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 18 LKNQLDQMYVPGKLHDVEHVLIDVGTGY--YVEKTAEDAKDFFKRKIDFLTKQMEKIQPA 75
L+ Q Q+ + D+ L D+ Y K +A++++K K+ LT Q A
Sbjct: 254 LQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLT------QAA 307
Query: 76 LQEKHAMKQAVMEMMSQKIQ 95
+ A++QA EMM + Q
Sbjct: 308 NKNNDALRQAKQEMMEYRHQ 327
>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
[Homo sapiens]
Length = 2671
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 16 EMLKNQLDQMYVPGKLHDVEHVLIDVGTG-YYVEKTAED 53
EML L +++ P +H + H+L+ G G YV + A+D
Sbjct: 1443 EMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADD 1481
>gi|34304360 nephrocystin 3 [Homo sapiens]
Length = 1330
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 21 QLDQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKID 63
QL+++ + D L ++G YY++ E A F KR ++
Sbjct: 1079 QLEELTLGKDTPDNARTLNELGVLYYLQNNLETADQFLKRSLE 1121
>gi|23503283 TBC1 domain family, member 21 [Homo sapiens]
Length = 336
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 43 TGYYVEKTAEDAK---DFFKRK-IDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQL 97
TGY+ ++++D + D +RK L + EKIQP L+ H +++ IQ++
Sbjct: 71 TGYFSWQSSQDERLTVDSMRRKNYKALCQMYEKIQPLLENLHRNFTETRNNIARDIQKI 129
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 51 AEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS--------------QKIQQ 96
AED K+ R ID L KQ+ ++ +E A + + S +K+ Q
Sbjct: 630 AEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQ 689
Query: 97 LTALGAAQA 105
LT + A+A
Sbjct: 690 LTNVSRAKA 698
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 51 AEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS--------------QKIQQ 96
AED K+ R ID L KQ+ ++ +E A + + S +K+ Q
Sbjct: 619 AEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQ 678
Query: 97 LTALGAAQA 105
LT + A+A
Sbjct: 679 LTNVSRAKA 687
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 51 AEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS--------------QKIQQ 96
AED K+ R ID L KQ+ ++ +E A + + S +K+ Q
Sbjct: 598 AEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQ 657
Query: 97 LTALGAAQA 105
LT + A+A
Sbjct: 658 LTNVSRAKA 666
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 51 AEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS--------------QKIQQ 96
AED K+ R ID L KQ+ ++ +E A + + S +K+ Q
Sbjct: 627 AEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQ 686
Query: 97 LTALGAAQA 105
LT + A+A
Sbjct: 687 LTNVSRAKA 695
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 51 AEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS--------------QKIQQ 96
AED K+ R ID L KQ+ ++ +E A + + S +K+ Q
Sbjct: 627 AEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQ 686
Query: 97 LTALGAAQA 105
LT + A+A
Sbjct: 687 LTNVSRAKA 695
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 51 AEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMS--------------QKIQQ 96
AED K+ R ID L KQ+ ++ +E A + + S +K+ Q
Sbjct: 627 AEDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQ 686
Query: 97 LTALGAAQA 105
LT + A+A
Sbjct: 687 LTNVSRAKA 695
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 48 EKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQK 93
E+ + + +KRK +Q E++Q LQ++HA +++ + Q+
Sbjct: 441 ERRQAEREQEYKRKQLEEQRQSERLQRQLQQEHAYLKSLQQQQQQQ 486
>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
Length = 1303
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 48 EKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQK 93
E+ + + +KRK +Q E++Q LQ++HA +++ + Q+
Sbjct: 441 ERRQAEREQEYKRKQLEEQRQSERLQRQLQQEHAYLKSLQQQQQQQ 486
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 48 EKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQK 93
E+ + + +KRK +Q E++Q LQ++HA +++ + Q+
Sbjct: 441 ERRQAEREQEYKRKQLEEQRQSERLQRQLQQEHAYLKSLQQQQQQQ 486
>gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]
Length = 1295
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 48 EKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQK 93
E+ + + +KRK +Q E++Q LQ++HA +++ + Q+
Sbjct: 441 ERRQAEREQEYKRKQLEEQRQSERLQRQLQQEHAYLKSLQQQQQQQ 486
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 48 EKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKI 94
EK +AKD ++ ++ L + KIQ Q + +KQ + +++ +KI
Sbjct: 151 EKQKSEAKD--RKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKI 195
>gi|167555106 centlein isoform 2 [Homo sapiens]
Length = 391
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 48 EKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKI 94
EK +AKD ++ ++ L + KIQ Q + +KQ + +++ +KI
Sbjct: 151 EKQKSEAKD--RKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKI 195
>gi|21450705 leucine rich repeat containing 45 [Homo sapiens]
Length = 670
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/56 (16%), Positives = 33/56 (58%)
Query: 49 KTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQ 104
++ ED++ ++++ +T+ +E+ + A+QE+ +A + +++ ++ A ++
Sbjct: 424 QSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSE 479
>gi|51972236 zinc finger protein 705A [Homo sapiens]
Length = 300
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 17 MLKNQLDQMYVPGKLHDVEHVLIDVGTGYYVEKT-----AEDAKDFFKRKIDFLTKQMEK 71
M+ ++Y L ++ H+ V GY + K+ E K+ ++ +FL Q
Sbjct: 23 MMDTSKRKLYRDVMLENISHL---VSLGYQISKSYIILQLEQGKELWREGREFLQDQNPD 79
Query: 72 IQPALQEKH 80
+ AL++KH
Sbjct: 80 RESALKKKH 88
>gi|157426887 dedicator of cytokinesis 6 [Homo sapiens]
Length = 2047
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 55 KDFFKRKIDFLTKQMEKIQPALQEKH--------AMKQAVMEMMSQKIQQLTA 99
KDF K+ D L K I P +E H +++A+ +++Q++ QL A
Sbjct: 1975 KDFCKKCEDALRKNKALIGPDQKEYHRELERNYCRLREALQPLLTQRLPQLMA 2027
>gi|167614504 laminin, beta 1 precursor [Homo sapiens]
Length = 1786
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 45 YYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTA 99
Y V+++AED K ++D K++E + E+ A + EM+ + + L A
Sbjct: 1677 YTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQNEAKTLLA 1731
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 63 DFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA 109
D L++ E Q L+E +K+A ++S+ +L A A A+A
Sbjct: 1727 DLLSQIQENYQKPLEELEVLKEAASHVLSKHNNELKAAEALVREAEA 1773
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/74 (18%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 30 KLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEM 89
++ D++ L + G+ K+ ++ K+K++ +++ ++ LQ+K + + +
Sbjct: 523 QIEDLQKSLQEQGS-----KSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPD 577
Query: 90 MSQKIQQLTALGAA 103
++Q +Q++ L AA
Sbjct: 578 INQNVQKINELEAA 591
>gi|4557255 adenylate cyclase 7 [Homo sapiens]
Length = 1080
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 18 LKNQLDQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLT 66
L N+++ VPG++H E L + Y VE +D + ++++ T
Sbjct: 401 LANRMEAAGVPGRVHITEATLKHLDKAYEVEDGHGQQRDPYLKEMNIRT 449
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,225,879
Number of Sequences: 37866
Number of extensions: 116192
Number of successful extensions: 622
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 35
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.