Guide to the Human Genome
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Name: PFDN5 Sequence: fasta or formatted (109aa) NCBI GI: 22202637
Description:

prefoldin subunit 5 isoform gamma

Referenced in:

Heat-Shock Proteins and Chaperonins
Myc and Related Functions

Other entries for this name:
alt prot [154aa] prefoldin subunit 5 isoform alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         12           2
 C cysteine            0.0          0           0
 D aspartate           5.5          6           1
 E glutamate           7.3          8           1
 F phenylalanine       2.8          3           2
 G glycine             3.7          4           1
 H histidine           2.8          3           1
 I isoleucine          5.5          6           1
 K lysine             11.0         12           1
 L leucine            10.1         11           1
 M methionine          7.3          8           2
 N asparagine          2.8          3           1
 P proline             2.8          3           1
 Q glutamine          11.0         12           2
 R arginine            0.9          1           1
 S serine              1.8          2           1
 T threonine           5.5          6           1
 V valine              5.5          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.8          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prefoldin subunit 5 isoform gamma 
PFDN5                 0.884   prefoldin subunit 5 isoform alpha 
LRRFIP1               0.026   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.026   leucine rich repeat (in FLII) interacting protein 1...
TASP1                 0.021   taspase 1 precursor 
PARP4                 0.016   poly (ADP-ribose) polymerase family, member 4 [Homo...
KIF21B                0.016   kinesin family member 21B 
DES                   0.016   desmin 
GCN1L1                0.011   GCN1 general control of amino-acid synthesis 1-like ...
NPHP3                 0.011   nephrocystin 3 
TBC1D21               0.011   TBC1 domain family, member 21 
RAI14                 0.005   retinoic acid induced 14 isoform d 
RAI14                 0.005   retinoic acid induced 14 isoform c 
RAI14                 0.005   retinoic acid induced 14 isoform b 
RAI14                 0.005   retinoic acid induced 14 isoform a 
RAI14                 0.005   retinoic acid induced 14 isoform a 
RAI14                 0.005   retinoic acid induced 14 isoform a 
MINK1                 0.005   misshapen/NIK-related kinase isoform 4 
MINK1                 0.005   misshapen/NIK-related kinase isoform 2 
MINK1                 0.005   misshapen/NIK-related kinase isoform 3 
MINK1                 0.005   misshapen/NIK-related kinase isoform 1 
CNTLN                 0.005   centlein isoform 1 
CNTLN                 0.005   centlein isoform 2 
LRRC45                0.005   leucine rich repeat containing 45 
ZNF705A               0.005   zinc finger protein 705A 
DOCK6                 0.005   dedicator of cytokinesis 6 
LAMB1                 0.005   laminin, beta 1 precursor 
LAMA1                 0.005   laminin, alpha 1 precursor 
HOOK1                 0.005   hook homolog 1 
ADCY7                 0.005   adenylate cyclase 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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