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Search of human proteins with 221554537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221554537 docking protein 3 isoform 1 [Homo sapiens]
(496 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221554537 docking protein 3 isoform 1 [Homo sapiens] 1022 0.0
gi|221554539 docking protein 3 isoform 2 [Homo sapiens] 446 e-125
gi|41406050 docking protein 2 [Homo sapiens] 201 2e-51
gi|221554541 docking protein 3 isoform 3 [Homo sapiens] 187 2e-47
gi|4503357 docking protein 1 [Homo sapiens] 183 4e-46
gi|5730059 fibroblast growth factor receptor substrate 3 [Homo s... 59 1e-08
gi|29544726 docking protein 5 [Homo sapiens] 57 5e-08
gi|47575849 docking protein 6 [Homo sapiens] 53 7e-07
gi|110347414 fibroblast growth factor receptor substrate 2 [Homo... 52 2e-06
gi|110347408 fibroblast growth factor receptor substrate 2 [Homo... 52 2e-06
gi|20070302 docking protein 4 [Homo sapiens] 51 3e-06
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 46 9e-05
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 44 3e-04
gi|157676340 zinc finger protein 142 [Homo sapiens] 41 0.002
gi|18079216 CASK interacting protein 1 [Homo sapiens] 40 0.005
gi|22749289 hypothetical protein LOC170062 [Homo sapiens] 40 0.006
gi|116256475 zinc finger protein 827 [Homo sapiens] 39 0.008
gi|71274186 hypothetical protein LOC85449 [Homo sapiens] 39 0.011
gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens] 38 0.024
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens] 38 0.024
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 37 0.032
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 37 0.032
gi|26051204 calcium/calmodulin-dependent protein kinase II beta ... 37 0.041
gi|148727370 immediate early response 5-like [Homo sapiens] 36 0.071
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 36 0.092
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 36 0.092
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 36 0.092
gi|18959276 forkhead box D4-like 1 [Homo sapiens] 36 0.092
gi|50345997 E1A binding protein p300 [Homo sapiens] 35 0.12
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 35 0.12
>gi|221554537 docking protein 3 isoform 1 [Homo sapiens]
Length = 496
Score = 1022 bits (2642), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MTRGARLRSDARAQLNQLSLDGGTGSGQKGKCEEFPSSLSSVSPGLEAAALLLAVTMDPL 60
MTRGARLRSDARAQLNQLSLDGGTGSGQKGKCEEFPSSLSSVSPGLEAAALLLAVTMDPL
Sbjct: 1 MTRGARLRSDARAQLNQLSLDGGTGSGQKGKCEEFPSSLSSVSPGLEAAALLLAVTMDPL 60
Query: 61 ETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRSAGPG 120
ETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRSAGPG
Sbjct: 61 ETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRSAGPG 120
Query: 121 RRGERRVIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQLAFP 180
RRGERRVIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQLAFP
Sbjct: 121 RRGERRVIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQLAFP 180
Query: 181 GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 240
GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL
Sbjct: 181 GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 240
Query: 241 GPDAIQLREAKGTQALYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDLC 300
GPDAIQLREAKGTQALYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDLC
Sbjct: 241 GPDAIQLREAKGTQALYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDLC 300
Query: 301 RAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP 360
RAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP
Sbjct: 301 RAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP 360
Query: 361 GPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEPHEG 420
GPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEPHEG
Sbjct: 361 GPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEPHEG 420
Query: 421 PGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRRLLELDQVEGTGRPDPQAGFKAKLVT 480
PGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRRLLELDQVEGTGRPDPQAGFKAKLVT
Sbjct: 421 PGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRRLLELDQVEGTGRPDPQAGFKAKLVT 480
Query: 481 LLSRERRKGPAPCDRP 496
LLSRERRKGPAPCDRP
Sbjct: 481 LLSRERRKGPAPCDRP 496
>gi|221554539 docking protein 3 isoform 2 [Homo sapiens]
Length = 330
Score = 446 bits (1146), Expect = e-125
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 57 MDPLETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRS 116
MDPLETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRS
Sbjct: 1 MDPLETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRS 60
Query: 117 AGPGRRGERRVIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQ 176
AGPGRRGERRVIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQ
Sbjct: 61 AGPGRRGERRVIRLADCVSVLPADGESCPRDTGAFLLTTTERSHLLAAQHRQAWMGPICQ 120
Query: 177 LAFPGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPA 236
LAFPGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPA
Sbjct: 121 LAFPGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPA 180
Query: 237 LLVLGPDAIQLREAKGTQALYSWPYHFLRKFGSDK 271
LLVLGPDAIQLREAKGTQALYSWPYHFLRKFGSDK
Sbjct: 181 LLVLGPDAIQLREAKGTQALYSWPYHFLRKFGSDK 215
>gi|41406050 docking protein 2 [Homo sapiens]
Length = 412
Score = 201 bits (510), Expect = 2e-51
Identities = 159/414 (38%), Positives = 196/414 (47%), Gaps = 59/414 (14%)
Query: 64 IKDGILY-QQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRSAGPGR- 121
+K G LY QQ FGKK WR+ A LY G +ARLE E GP +
Sbjct: 6 VKQGFLYLQQQQTFGKK-WRRFGASLYGGSDCALARLELQE--------------GPEKP 50
Query: 122 ---RGERRVIRLADCVSVLPADGE-SCPRDTGAFLLTTTERSHLLAAQ--HRQAWMGPIC 175
R+VIRL+DC+ V A GE S PRDT AF L T ER +LLAA R W+ IC
Sbjct: 51 RRCEAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAERGDWVQAIC 110
Query: 176 QLAFPGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVG---EFPVVVQRTEAATRCQL 232
LAFPG + SG QS MEEN +YSS VG EF V ++ TEA+ RC L
Sbjct: 111 LLAFPGQRKELSGPEGKQSRPC----MEENELYSSAVTVGPHKEFAVTMRPTEASERCHL 166
Query: 233 KGPALLVLGPDAIQL--REAKGTQALYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFA 290
+G L G A++L GTQ LY WPY FLR+FG DK FSFEAGRRC SGEG F
Sbjct: 167 RGSYTLRAGESALELWGGPEPGTQ-LYDWPYRFLRRFGRDKVTFSFEAGRRCVSGEGNFE 225
Query: 291 FSTPCAPDLCRAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELRE---MPPGP 347
F T ++ A+ AI+ Q+ P +PQP +P SLP D+P PP P
Sbjct: 226 FETRQGNEIFLALEEAISAQKNAAPATPQPQPATIP--ASLPRPDSPYSRPHDSLPPPSP 283
Query: 348 EPPTSRKMHLAEPGPQSLPL-------------LLGPEPNDLASGLYASVCKRASGPPGN 394
P + G ++P +L P LA LY S+ + PP
Sbjct: 284 TTPVPAPRPRGQEGEYAVPFDAVARSLGKNFRGILAVPPQLLADPLYDSI--EETLPPRP 341
Query: 395 EHLYEN-----LCVLEASPTLHGGEPEPHEGPGSRSPT-TSPIYHNGQDLSWPG 442
+H+Y+ L SP GE + R P + GQD S G
Sbjct: 342 DHIYDEPEGVAALSLYDSPQEPRGEAWRRQATADRDPAGLQHVQPAGQDFSASG 395
>gi|221554541 docking protein 3 isoform 3 [Homo sapiens]
Length = 228
Score = 187 bits (475), Expect = 2e-47
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 181 GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 240
GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL
Sbjct: 23 GTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPALLVL 82
Query: 241 GPDAIQLREAKGTQALYSWPYHFLRKFGSDK 271
GPDAIQLREAKGTQALYSWPYHFLRKFGSDK
Sbjct: 83 GPDAIQLREAKGTQALYSWPYHFLRKFGSDK 113
Score = 50.4 bits (119), Expect = 4e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 57 MDPLETPIKDGILYQQHVKFGK 78
MDPLETPIKDGILYQQHVKFGK
Sbjct: 1 MDPLETPIKDGILYQQHVKFGK 22
>gi|4503357 docking protein 1 [Homo sapiens]
Length = 481
Score = 183 bits (464), Expect = 4e-46
Identities = 137/370 (37%), Positives = 187/370 (50%), Gaps = 18/370 (4%)
Query: 60 LETPIKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWEVRDGGLGAAGDRSAGP 119
++ + +G L+ Q +FG K WRK WA+LY P GVARLE ++ + G++ G
Sbjct: 1 MDGAVMEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHK----GSSSGGGRGS 56
Query: 120 GRRGERRVIRLADCVSVLPADGESCPRDTG-AFLLTTTERSHLLAAQ--HRQAWMGPICQ 176
RR + +VIRLA+CVSV P E+ P AF L T +RSHLLAA AW+ +C+
Sbjct: 57 SRRLDCKVIRLAECVSVAPVTVETPPEPGATAFRLDTAQRSHLLAADAPSSAAWVQTLCR 116
Query: 177 LAFPGTGEASSGSTDAQSPKRGLVPMEENSIYSSWQEVGEFPVVVQRTEAATRCQLKGPA 236
AFP G + TD PK + M ENS+YS E +F V VQRTEAA RC L G
Sbjct: 117 NAFP-KGSWTLAPTD-NPPKLSALEMLENSLYSPTWEGSQFWVTVQRTEAAERCGLHGSY 174
Query: 237 LLVLGPDAIQL----REAKGTQALYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFS 292
+L + + + L +++ + L SWPY LR++G DK +FSFEAGRRC SG G F F
Sbjct: 175 VLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQ 234
Query: 293 TPCAPDLCRAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTS 352
T D+ +AV AI RQ+ + Q + RA S G+L PPGP+
Sbjct: 235 TAQGNDIFQAVETAIHRQK---AQGKAGQGHDVLRADSHEGEVAEGKL-PSPPGPQELLD 290
Query: 353 RKMHLAEPGPQSLPLLLGPEPNDLASG-LYASVCKRASGPPGNEHLYENLCVLEASPTLH 411
L SL + P + L S L ++ + G + LY +L L
Sbjct: 291 SPPALYAEPLDSLRIAPCPSQDSLYSDPLDSTSAQAGEGVQRKKPLYWDLYEHAQQQLLK 350
Query: 412 GGEPEPHEGP 421
+P E P
Sbjct: 351 AKLTDPKEDP 360
>gi|5730059 fibroblast growth factor receptor substrate 3 [Homo
sapiens]
Length = 492
Score = 58.9 bits (141), Expect = 1e-08
Identities = 63/232 (27%), Positives = 84/232 (36%), Gaps = 68/232 (29%)
Query: 259 WPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDL---------CRAV----AG 305
WPY LR++G D +FSFE+GRRC +G+G+FAF A ++ C ++
Sbjct: 57 WPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEP 116
Query: 306 AIARQRERLPEL---TRPQP--------------CP-------LPRATSLPSLDTPGELR 341
I + EL PQP CP PR S SL P
Sbjct: 117 VIITRNSHPAELDLPRAPQPPNALGYTVSSFSNGCPGEGPRFSAPRRLSTSSLRHPSLGE 176
Query: 342 EM----------------PPGPEPPTSRKMHLAEPGPQS----LPLLLGPEPNDLASGLY 381
E P E R H +P P+ LP GP+ D L
Sbjct: 177 ESTHALIAPDEQSHTYVNTPASEDDHRRGRHCLQPLPEGQAPFLPQARGPDQRDPQVFLQ 236
Query: 382 ASVCKRASGP-PGNEHLY--ENLCVLEASPTLHGGEPEPHEGPGSRSPTTSP 430
K GP P H+ + LC P+LH PH + +P+ P
Sbjct: 237 PGQVKFVLGPTPARRHMVKCQGLC-----PSLH---DPPHHNNNNEAPSECP 280
>gi|29544726 docking protein 5 [Homo sapiens]
Length = 306
Score = 56.6 bits (135), Expect = 5e-08
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 256 LYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDLCRAV---AGAIARQRE 312
L SWP LR++G D F+FEAGR C +GEGLF F T + + V A AIA Q E
Sbjct: 176 LISWPLSALRRYGRDTTWFTFEAGRMCETGEGLFIFQTRDGEAIYQKVHSAALAIAEQHE 235
Query: 313 RLPELTRPQPCPLPRATSLPSLDT 336
RL + + + + SL T
Sbjct: 236 RLLQSVKNSMLQMKMSERAASLST 259
>gi|47575849 docking protein 6 [Homo sapiens]
Length = 331
Score = 52.8 bits (125), Expect = 7e-07
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 256 LYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDLCRAVAG---AIARQRE 312
L WP LR++G D F+FE+GR C +GEGLF F T + + V AIA Q E
Sbjct: 176 LVMWPLSSLRRYGRDSTWFTFESGRMCDTGEGLFTFQTREGEMIYQKVHSATLAIAEQHE 235
Query: 313 RLP---------ELTRPQPCPLPRATSLP 332
RL + + +P L ++ SLP
Sbjct: 236 RLMLEMEQKARLQTSLTEPMTLSKSISLP 264
>gi|110347414 fibroblast growth factor receptor substrate 2 [Homo
sapiens]
Length = 508
Score = 51.6 bits (122), Expect = 2e-06
Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 32/232 (13%)
Query: 259 WPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDL------------CRAVAGA 306
W Y LR++G D +FSFE+GRRC +G+G+FAF A +L V
Sbjct: 57 WHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEP 116
Query: 307 IARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMP--------PGPEPPTSRKMHLA 358
+ + EL P+ P + + P P P P+ L
Sbjct: 117 VVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLP 176
Query: 359 EPGPQSL-PLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEP 417
G +S PLL+ E +R + + L + E+S P
Sbjct: 177 SVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRTSVHVPLEARVSNAESS--------TP 228
Query: 418 HEGPGSRSPTTSPIYHNGQDLSW---PGPANDSTLEAQYRRLLELDQVEGTG 466
E P S I + + + P P +E + L DQV G+G
Sbjct: 229 KEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGSG 280
>gi|110347408 fibroblast growth factor receptor substrate 2 [Homo
sapiens]
Length = 508
Score = 51.6 bits (122), Expect = 2e-06
Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 32/232 (13%)
Query: 259 WPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDL------------CRAVAGA 306
W Y LR++G D +FSFE+GRRC +G+G+FAF A +L V
Sbjct: 57 WHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEP 116
Query: 307 IARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMP--------PGPEPPTSRKMHLA 358
+ + EL P+ P + + P P P P+ L
Sbjct: 117 VVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLP 176
Query: 359 EPGPQSL-PLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEP 417
G +S PLL+ E +R + + L + E+S P
Sbjct: 177 SVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRTSVHVPLEARVSNAESS--------TP 228
Query: 418 HEGPGSRSPTTSPIYHNGQDLSW---PGPANDSTLEAQYRRLLELDQVEGTG 466
E P S I + + + P P +E + L DQV G+G
Sbjct: 229 KEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGSG 280
>gi|20070302 docking protein 4 [Homo sapiens]
Length = 326
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 256 LYSWPYHFLRKFGSDKGVFSFEAGRRCHSGEGLFAFSTPCAPDLCRAVAG---AIARQRE 312
L SWP LR++G D F+FEAGR C +GEGL+ F T + + V AIA Q +
Sbjct: 176 LVSWPLCSLRRYGRDATRFTFEAGRMCDAGEGLYTFQTQEGEQIYQRVHSATLAIAEQHK 235
Query: 313 RL 314
R+
Sbjct: 236 RV 237
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 45.8 bits (107), Expect = 9e-05
Identities = 54/163 (33%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 310 QRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPE----PPTSRKMHLAEPGPQSL 365
+R R P P+P P A+ P L T +LR PP PTS + LA PGP
Sbjct: 1911 RRSRRPSPLAPRPPPSRWAS--PPLKTSPQLRVPPPTSVVTALTPTSGE--LAPPGPAPS 1966
Query: 366 PLL---LGPEPNDL--ASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEPHEG 420
P LGP+ D+ SGL A+ A+ G E E + A + HGG + E
Sbjct: 1967 PPPPEDLGPDFEDMEVVSGLSAADLDFAASLLGTEPFQEEIVAAGAMGSSHGGPGDSSE- 2025
Query: 421 PGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRRLLELDQVE 463
SPT+ I+ +S PG A +T A R+ +LD V+
Sbjct: 2026 -EESSPTSRYIHFPVTVVSAPGLAPSATPGAP--RIEQLDGVD 2065
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 44.3 bits (103), Expect = 3e-04
Identities = 47/158 (29%), Positives = 59/158 (37%), Gaps = 17/158 (10%)
Query: 311 RERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLG 370
R +L + + P P P S PS TP + PP P PP P P S P L
Sbjct: 273 RAKLDQAPKVPPTPEPLPLSTPSAGTPQS--QPPPLPPPP--------PPAPGSAPPALP 322
Query: 371 PE--PNDLASGLYASVCKRAS--GPPGNEHLYENLCVLEASPTLHGGEPEPHEGPGSRSP 426
PE P D + L + AS G G H +P GG+P GP
Sbjct: 323 PEGPPEDSSQDLAPNSVGAASTGGGTGGTHPNTPTATTANNPLPPGGDPSSAPGPALLGE 382
Query: 427 TTSPIYHNGQ-DLSWPGPANDSTLEAQYRRLLELDQVE 463
+P NGQ L + LE + R L L +E
Sbjct: 383 AAAP--GNGQRSLVGSEGLSKEQLEHRERSLQTLRDIE 418
>gi|157676340 zinc finger protein 142 [Homo sapiens]
Length = 1687
Score = 41.2 bits (95), Expect = 0.002
Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 24/172 (13%)
Query: 297 PDLCRAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPE-------- 348
P LC + +QR L + P L + LP D+P L+ + PG +
Sbjct: 865 PLLCPECGASFKQQRGLSTHLLKKCPVLLRKNKGLPRPDSPIPLQPVLPGTQASEDTESG 924
Query: 349 --PPTSRKMHLAEPGPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCVLEA 406
PP S++ L P+ PL L EP + L A+V P GN E
Sbjct: 925 KPPPASQEAELLL--PKDAPLELPREPEETEEPL-ATVSGSPVPPAGNSLPTE------- 974
Query: 407 SPTLHGGEPEPHEGPGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRRLLE 458
+P H +P P G+ SPT +P H+ + P N S EA + E
Sbjct: 975 APKKHCFDPVP--PAGNSSPTEAPKKHHLDPV--PPAGNSSPTEALKKHRFE 1022
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 31/130 (23%)
Query: 324 PLPRATSLPSLDTPGELREM----------PPGPEPPTSRKM-HLAEPGPQSLPLLLGPE 372
P PRAT+ G R M PPGP P SR +L + GP G
Sbjct: 684 PTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAP-----GTP 738
Query: 373 PNDLASGLYASVCKRASG-----------PPGNEHLYENLCVLEASPTLHGGEPEPHEGP 421
P + G + KRAS PPG H + P G P+ GP
Sbjct: 739 PREARPGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRP----GSPQALGGP 794
Query: 422 GSRSPTTSPI 431
+P T+ +
Sbjct: 795 HGPAPATAKV 804
Score = 29.6 bits (65), Expect = 6.6
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 315 PELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP--GPQSLPLLLGPE 372
P LT+P P L TP + PGP P ++ H P P+ P P+
Sbjct: 1230 PVLTQPVP-------KLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPK 1282
Query: 373 PNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEPHEGPGS 423
P +GL + + P L +P G P PG+
Sbjct: 1283 PVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGA 1333
>gi|22749289 hypothetical protein LOC170062 [Homo sapiens]
Length = 645
Score = 39.7 bits (91), Expect = 0.006
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 277 EAGRRCHSGEGLFAFST-----PCAPDLCRAVAGAIARQRERLPELTRPQPCPLPRATSL 331
+A RC + E T PC R ++R R +LP+ P P T
Sbjct: 161 DAWARCEAREKTTEVPTESGKYPCGESCPRPPETPVSRLRPQLPKTPVSSRRPEPPKTRA 220
Query: 332 PSL-DTPGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEP 373
PSL P + R PEPP +R HL P++ L PEP
Sbjct: 221 PSLRPEPPKTRVSSLHPEPPETRASHLRVDPPETGVSHLCPEP 263
Score = 29.3 bits (64), Expect = 8.6
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 315 PELTRPQPCPLPRATSLPSLDT-PGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEP 373
PE CP P T + S+ P + PEPP +R HL P++ L PEP
Sbjct: 252 PETGVSHLCPEPPKTLVSSVHPEPPDTGASHLCPEPPETRVSHLHPESPETGVSHLRPEP 311
Query: 374 N 374
+
Sbjct: 312 S 312
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 39.3 bits (90), Expect = 0.008
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 301 RAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP 360
RA +A + LPE P P PS P ++ PP P PP P
Sbjct: 297 RAAGSLLAEKSSLLPEDPLPPP---------PSEKKPEKVTPPPPPPPPPPP------PP 341
Query: 361 GPQSLPLLLGPEPNDLASGLYASVCKRASGPP 392
PQSL LLL P P S S + SG P
Sbjct: 342 PPQSLELLLLPVPKGRVSKPSNSASEEESGKP 373
>gi|71274186 hypothetical protein LOC85449 [Homo sapiens]
Length = 1200
Score = 38.9 bits (89), Expect = 0.011
Identities = 43/144 (29%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 293 TPCAPDLCRAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPP-- 350
+P +P + + +ER L +P PCP R TS P TPG G P
Sbjct: 426 SPASPAAAASETKIEVKTKERNGRLPKPMPCP-SRNTSSPEPPTPGLKFSFLRGQRQPSV 484
Query: 351 TSRKMHLAEPGP-QSLPLLLGPEPNDLAS-GLYASVCKRASGP-PGNEHLYENLCVL--- 404
T K L GP + L L P+PN S G + + SGP L E L
Sbjct: 485 TPEKASLQHNGPWKVLCSLYSPKPNRAKSLGKAGTTQTKTSGPATAPSPLTEEKAALPEA 544
Query: 405 -----EASPTLHGGEPEPHEGPGS 423
E PTL P P G+
Sbjct: 545 SAGSPERGPTLEEEPPGPEPRIGA 568
>gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens]
Length = 572
Score = 37.7 bits (86), Expect = 0.024
Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 278 AGRRCHSGEGLFAFSTPCAPDLCRAVAGAIARQRERLPE-LTRPQPCPLPRATSLPSLDT 336
A R CH EG + PC P+L R R+P RP P RA + D+
Sbjct: 322 AARSCHRLEGWPPWVGPCFPEL-----------RRRVPRGGGRPAAAPPTRAPTRRFSDS 370
Query: 337 PGELREMPPGPEPPTSRKMHLAEPGPQSLP 366
G L PPG PP H A P P LP
Sbjct: 371 SGSL--TPPGHRPP-----HPASPPPLLLP 393
>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
Length = 668
Score = 37.7 bits (86), Expect = 0.024
Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 278 AGRRCHSGEGLFAFSTPCAPDLCRAVAGAIARQRERLPE-LTRPQPCPLPRATSLPSLDT 336
A R CH EG + PC P+L R R+P RP P RA + D+
Sbjct: 418 AARSCHRLEGWPPWVGPCFPEL-----------RRRVPRGGGRPAAAPPTRAPTRRFSDS 466
Query: 337 PGELREMPPGPEPPTSRKMHLAEPGPQSLP 366
G L PPG PP H A P P LP
Sbjct: 467 SGSL--TPPGHRPP-----HPASPPPLLLP 489
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 37.4 bits (85), Expect = 0.032
Identities = 50/188 (26%), Positives = 62/188 (32%), Gaps = 18/188 (9%)
Query: 315 PELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP---GPQSLPLLLGP 371
P +PQP P P+ S P P + + P P P P GP P L P
Sbjct: 403 PPKLQPQPQPQPQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEP 462
Query: 372 EPNDLASGLYASVCKRA---SGPPGNEHLYENLCVLEASPTLHGGEPEPHEGPGSRSPTT 428
EP GL V + GP L A P PE E +
Sbjct: 463 EPE--IEGLLTPVLEAGDVDEGPVARPLSPTRL--QPALPPEAQSVPELEEVARVLAEIP 518
Query: 429 SPIYHNGQDLSWPGPANDSTLEAQYR----RLLELDQVEGTGRPDPQAGFKAKLVTLLSR 484
P+ G P A T + QY+ RL G G P+P+ +T S
Sbjct: 519 RPLKRRGSMEQAPAVALPPTHKKQYQQIISRLFHRHGGPGPGGPEPE----LSPITEGSE 574
Query: 485 ERRKGPAP 492
R PAP
Sbjct: 575 ARAGPPAP 582
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 37.4 bits (85), Expect = 0.032
Identities = 50/188 (26%), Positives = 62/188 (32%), Gaps = 18/188 (9%)
Query: 315 PELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEP---GPQSLPLLLGP 371
P +PQP P P+ S P P + + P P P P GP P L P
Sbjct: 403 PPKLQPQPQPQPQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEP 462
Query: 372 EPNDLASGLYASVCKRA---SGPPGNEHLYENLCVLEASPTLHGGEPEPHEGPGSRSPTT 428
EP GL V + GP L A P PE E +
Sbjct: 463 EPE--IEGLLTPVLEAGDVDEGPVARPLSPTRL--QPALPPEAQSVPELEEVARVLAEIP 518
Query: 429 SPIYHNGQDLSWPGPANDSTLEAQYR----RLLELDQVEGTGRPDPQAGFKAKLVTLLSR 484
P+ G P A T + QY+ RL G G P+P+ +T S
Sbjct: 519 RPLKRRGSMEQAPAVALPPTHKKQYQQIISRLFHRHGGPGPGGPEPE----LSPITEGSE 574
Query: 485 ERRKGPAP 492
R PAP
Sbjct: 575 ARAGPPAP 582
>gi|26051204 calcium/calmodulin-dependent protein kinase II beta
isoform 1 [Homo sapiens]
Length = 666
Score = 37.0 bits (84), Expect = 0.041
Identities = 42/132 (31%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 294 PCAPDLCRAVAGAIARQRERLPELTRPQPCPLPRATS---LPSLDTPGELREMPPGPEPP 350
P PD+ +V R+ PE P PCP P S PS L + G P
Sbjct: 410 PRVPDILSSV-----RRGSGAPEAEGPLPCPSPAPFSPLPAPSPRISDILNSVRRGSGTP 464
Query: 351 TSRKMHLAEPGPQSLPLLLGP--EPNDLASGLYASVCKRASGPP---GNEHLYENLCVLE 405
+ A P P P LLGP P+ S + SV +R SG P G + C
Sbjct: 465 EAEGPLSAGPPPCLSPALLGPLSSPSPRISDILNSV-RRGSGTPEAEGPSPVGPPPC--- 520
Query: 406 ASPTLHGGEPEP 417
SPT+ G P P
Sbjct: 521 PSPTIPGPLPTP 532
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 36.2 bits (82), Expect = 0.071
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 40/154 (25%)
Query: 320 PQPCPLPRATSLPS------LDTPGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEP 373
P+ C A P+ + PG PP P + + +PGP LPL L P
Sbjct: 134 PRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPLPLPPPA 193
Query: 374 NDLASGLYASVCKR-------ASGPPGNEHLYENLCVLEASPTLHGGEPEPHEGPGSRSP 426
A++C R S PPG A+P P P S +P
Sbjct: 194 P-------AALCPRDPRAPAACSAPPG------------AAPPAAAASP-----PASPAP 229
Query: 427 TTSPIYHNGQDLSWPGPANDSTLEAQYRRLLELD 460
+SP ++ G ++P P++ + +L+LD
Sbjct: 230 ASSPGFYRG---AYPTPSDFGLHCSSQTTVLDLD 260
Score = 35.8 bits (81), Expect = 0.092
Identities = 40/147 (27%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 305 GAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELR-----EMPPGPEPPTSRKMHLAE 359
GA R + P P P PLP P+ P + R PPG PP + A
Sbjct: 167 GAPHRGQPLEPLQPGPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPAS 226
Query: 360 PGPQSLP-LLLGPEPNDLASGLYAS-------VCKRASGPPGNEHLYENLCVLEASPTLH 411
P P S P G P GL+ S + N +L+++ C P
Sbjct: 227 PAPASSPGFYRGAYPTPSDFGLHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCG 286
Query: 412 GGEPEPHEGPGSRSPT-TSPIYHNGQD 437
G P GPG S Y+ GQ+
Sbjct: 287 QGAP----GPGLASAAGCKRKYYPGQE 309
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 35.8 bits (81), Expect = 0.092
Identities = 45/164 (27%), Positives = 61/164 (37%), Gaps = 23/164 (14%)
Query: 337 PGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEPNDLA-----SGLYASVCKRASGP 391
P E R PP P P H GP + LG + + GL A + + P
Sbjct: 98 PSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRP 157
Query: 392 PGNEHLYENLCVLEASPTLHGGEPEP--HEGP-GSRSPTTSPIYHNGQDLSWPGPANDST 448
P N + + P G +P P EG G R + P+ Q+ + P P T
Sbjct: 158 PPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPL---PQETAAPAPQPGPT 214
Query: 449 LEAQYRRLLELDQVEGTGRPDPQAGFKAKLVTLLSRERRKGPAP 492
A R+ E + EG R +P+ L SR R PAP
Sbjct: 215 --APPARVREPGRAEGASR-EPR---------LRSRAARPPPAP 246
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 35.8 bits (81), Expect = 0.092
Identities = 41/161 (25%), Positives = 59/161 (36%), Gaps = 23/161 (14%)
Query: 337 PGELREMPPGPEP-PTSRKMHLAEPGPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNE 395
PGE+RE P P P P HLAE ++G+ A K + PP +
Sbjct: 1946 PGEIREYVPPPVPLPPGPSTHLAEQ----------------STGMAAQAPKMSDKPPADT 1989
Query: 396 HLYENLCVLEASPTLHGGEPEPHEGPGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRR 455
+ +L + T P E P R+ + +DL+ G + S + +Q
Sbjct: 1990 NQMLSLSKKALAGTCQ--RPLLPERPLERTDSRPQPLDKVRDLAGSGTKSQSLVSSQ--- 2044
Query: 456 LLELDQVEGTGRPDPQAGFKAKLVTLLSRERRKGPAPCDRP 496
LD+ P PQ K VT S P +RP
Sbjct: 2045 -RPLDRPPAVAGPRPQLSDKPSPVTSPSSSPSVRSQPLERP 2084
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 35.8 bits (81), Expect = 0.092
Identities = 41/161 (25%), Positives = 59/161 (36%), Gaps = 23/161 (14%)
Query: 337 PGELREMPPGPEP-PTSRKMHLAEPGPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNE 395
PGE+RE P P P P HLAE ++G+ A K + PP +
Sbjct: 2215 PGEIREYVPPPVPLPPGPSTHLAEQ----------------STGMAAQAPKMSDKPPADT 2258
Query: 396 HLYENLCVLEASPTLHGGEPEPHEGPGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRR 455
+ +L + T P E P R+ + +DL+ G + S + +Q
Sbjct: 2259 NQMLSLSKKALAGTCQ--RPLLPERPLERTDSRPQPLDKVRDLAGSGTKSQSLVSSQ--- 2313
Query: 456 LLELDQVEGTGRPDPQAGFKAKLVTLLSRERRKGPAPCDRP 496
LD+ P PQ K VT S P +RP
Sbjct: 2314 -RPLDRPPAVAGPRPQLSDKPSPVTSPSSSPSVRSQPLERP 2353
>gi|18959276 forkhead box D4-like 1 [Homo sapiens]
Length = 408
Score = 35.8 bits (81), Expect = 0.092
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 283 HSGEGLFAFSTPCAPDLCRAVAGAIARQRERL------PELTRPQPCPLPRATSLPSLDT 336
H G+G + P + D+ G+ R+R+R P P P PLP A +
Sbjct: 174 HPGKGTYWSLDPASQDMFDN--GSFLRRRKRFKRHQLTPGAHLPHPFPLPAAHAALHNPR 231
Query: 337 PGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEPND--LASGLYASVCKRASG---- 390
PG L P P+P + A PG + LL P L++ YA K+A G
Sbjct: 232 PGPLLGAPALPQPVPGAYPNTA-PGRRPYALLHPHPPRYLLLSAPAYAGAPKKAEGADLA 290
Query: 391 PPGNEHLYENLCVLEASPTLHGGEPEP-HEGPGSRSP 426
PG L VL+ P+L P+P EG G SP
Sbjct: 291 TPG------TLPVLQ--PSL---GPQPWEEGKGLASP 316
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 35.4 bits (80), Expect = 0.12
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 33/173 (19%)
Query: 315 PELTRPQPCPLPRATSLPSLDTPGELREMPPG---PEP-PTSRKMHLAEPGPQSLPLLLG 370
P L + P P+P T P P + PP P P PT M PGPQS L
Sbjct: 825 PALHQNSPSPVPSRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAM---PPGPQSQALHPP 881
Query: 371 PE----------PNDLASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHGGEPEPH-- 418
P P + L A+ A P ++ +PT P+P
Sbjct: 882 PRQTPTPPTTQLPQQVQPSLPAA--PSADQPQQQPRSQQSTAASVPTPTAPLLPPQPATP 939
Query: 419 --------EGPGSRSPTTSPIYHNGQDLSWPGPANDSTLEAQYRRLLELDQVE 463
EG S P+TS N Q ++ P+ + +EA+ +E+DQ E
Sbjct: 940 LSQPAVSIEGQVSNPPSTSSTEVNSQAIAEKQPSQEVKMEAK----MEVDQPE 988
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 316 ELTRPQPCPLPRATSLPSLDTPGELREMPPGPEPPTSRKMHLAEPGPQSLPLLLGPEPND 375
++ PQP P PR S P +P M P P P H++ P L+ + N
Sbjct: 2306 QVRSPQPVPSPRPQSQPPHSSPSP--RMQPQPSP-----HHVSPQTSSPHPGLVAAQANP 2358
Query: 376 LASGLYASVCKRASGPPGNEHLYENLCVLEASPTLHG 412
+ G +AS P + L LHG
Sbjct: 2359 MEQGHFAS--------PDQNSMLSQLASNPGMANLHG 2387
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 35.4 bits (80), Expect = 0.12
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 344 PPGPEPPTSRKMHLAEPGPQSLPLLLGPEPNDLASGLYASVCKRASGPPGNEHLYENLCV 403
PP P PP + L P P PL P P S L + K P + +L
Sbjct: 39 PPRPLPPNPPRPPLPPPRPPKPPLP-PPRPPKPPSPLGLAQSKVTLFPSISPSSMASLAA 97
Query: 404 LEASPTLHGGEPEPHEGPGSRSPTTSPIYHNGQDLSWPGPANDS 447
L +S L +P P E P SRS T L+ P+NDS
Sbjct: 98 LASSSLLKSTKPNPLEDPVSRSVTI---------LARTEPSNDS 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,368,502
Number of Sequences: 37866
Number of extensions: 1564131
Number of successful extensions: 7257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 320
Number of HSP's that attempted gapping in prelim test: 6502
Number of HSP's gapped (non-prelim): 1000
length of query: 496
length of database: 18,247,518
effective HSP length: 106
effective length of query: 390
effective length of database: 14,233,722
effective search space: 5551151580
effective search space used: 5551151580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.