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Search of human proteins with 221554516
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221554516 cyclin L2 isoform C [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221554516 cyclin L2 isoform C [Homo sapiens] 470 e-133
gi|221554518 cyclin L2 isoform D [Homo sapiens] 442 e-125
gi|88758578 cyclin L2 isoform B [Homo sapiens] 442 e-125
gi|88758580 cyclin L2 isoform A [Homo sapiens] 437 e-123
gi|9945320 cyclin L1 [Homo sapiens] 319 1e-87
gi|150417989 cyclin K isoform 1 [Homo sapiens] 80 1e-15
gi|38176158 cyclin K isoform 2 [Homo sapiens] 80 1e-15
gi|17978469 cyclin T2 isoform b [Homo sapiens] 79 4e-15
gi|4502629 cyclin T2 isoform a [Homo sapiens] 79 4e-15
gi|17978466 cyclin T1 [Homo sapiens] 77 2e-14
gi|196049382 family with sequence similarity 58, member A isofor... 73 2e-13
gi|196049384 family with sequence similarity 58, member A isofor... 73 2e-13
gi|157502165 family with sequence similarity 58 member B [Homo s... 64 1e-10
gi|61676091 cyclin C isoform a [Homo sapiens] 47 1e-05
gi|12707580 paired-like homeobox 2b [Homo sapiens] 39 0.004
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 38 0.009
gi|7706435 headcase [Homo sapiens] 37 0.019
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 36 0.033
gi|24497554 homeobox A13 [Homo sapiens] 35 0.043
gi|39995084 integrator complex subunit 3 [Homo sapiens] 35 0.043
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 35 0.073
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 35 0.073
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 35 0.073
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 34 0.13
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 33 0.21
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 33 0.21
gi|126090909 engrailed homeobox 1 [Homo sapiens] 33 0.28
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 33 0.28
gi|157743247 F-box protein 45 [Homo sapiens] 33 0.28
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 33 0.28
>gi|221554516 cyclin L2 isoform C [Homo sapiens]
Length = 236
Score = 470 bits (1210), Expect = e-133
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
Sbjct: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
Query: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
Sbjct: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
Query: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
Sbjct: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
Query: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPLLKWDSWQRL 236
RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPLLKWDSWQRL
Sbjct: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPLLKWDSWQRL 236
>gi|221554518 cyclin L2 isoform D [Homo sapiens]
Length = 227
Score = 442 bits (1138), Expect = e-125
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
Sbjct: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
Query: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
Sbjct: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
Query: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
Sbjct: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
Query: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASE 224
RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASE
Sbjct: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASE 224
>gi|88758578 cyclin L2 isoform B [Homo sapiens]
Length = 226
Score = 442 bits (1138), Expect = e-125
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
Sbjct: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
Query: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
Sbjct: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
Query: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
Sbjct: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
Query: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASE 224
RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASE
Sbjct: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASE 224
>gi|88758580 cyclin L2 isoform A [Homo sapiens]
Length = 520
Score = 437 bits (1124), Expect = e-123
Identities = 222/227 (97%), Positives = 222/227 (97%)
Query: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
Sbjct: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR 60
Query: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
Sbjct: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM 120
Query: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
Sbjct: 121 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE 180
Query: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPL 227
RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSW D L
Sbjct: 181 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSL 227
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 319 bits (818), Expect = 1e-87
Identities = 160/231 (69%), Positives = 190/231 (82%), Gaps = 8/231 (3%)
Query: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQ--------GVLIGDRLYSGVLITLENCLLPD 56
A+ + +AA AA++ AP +GG+ SG+ G+LIGDRLYS V +T+++ L+P+
Sbjct: 2 ASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPE 61
Query: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
++L TPSM GLD +ETDLR++GCELIQAAGILLRLPQVAMATGQVLF RFFY+KSFV
Sbjct: 62 ERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFV 121
Query: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQI 176
KHS E V+MAC++LASKIEEAPRRIRDVINVFH LRQLR K+ P PL+LDQ+Y+N KNQ+
Sbjct: 122 KHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQV 181
Query: 177 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPL 227
IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQ LVQT+W D L
Sbjct: 182 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSL 232
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 80.5 bits (197), Expect = 1e-15
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 59 LRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKH 118
L TPS GLD TE R G I G L L +ATG + F RF+ SF +
Sbjct: 31 LAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF 90
Query: 119 SMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIK 178
C+ LA K+EE P++ +D+I L L D + Q + K +++
Sbjct: 91 PRYVTGACCLFLAGKVEETPKKCKDIIKTARSL--LND------VQFGQFGDDPKEEVMV 142
Query: 179 AERRVLKELGFCVHVKHPHKIIVMYLQVLECERN--QHLVQTSWVASEDPL-----LKWD 231
ER +L+ + F + V+HP++ ++ Y + L+ ++N Q LVQ +W D L L+W+
Sbjct: 143 LERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE 202
>gi|38176158 cyclin K isoform 2 [Homo sapiens]
Length = 354
Score = 80.5 bits (197), Expect = 1e-15
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 59 LRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKH 118
L TPS GLD TE R G I G L L +ATG + F RF+ SF +
Sbjct: 31 LAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF 90
Query: 119 SMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIK 178
C+ LA K+EE P++ +D+I L L D + Q + K +++
Sbjct: 91 PRYVTGACCLFLAGKVEETPKKCKDIIKTARSL--LND------VQFGQFGDDPKEEVMV 142
Query: 179 AERRVLKELGFCVHVKHPHKIIVMYLQVLECERN--QHLVQTSWVASEDPL-----LKWD 231
ER +L+ + F + V+HP++ ++ Y + L+ ++N Q LVQ +W D L L+W+
Sbjct: 143 LERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE 202
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 78.6 bits (192), Expect = 4e-15
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
++L TPS G++ D E R LIQ G L + Q+ + T V RF+ SF
Sbjct: 16 EQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFT 75
Query: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLD---QDYVNLK 173
K + +S + LA+K+EE R++ VI V H P+ LLD Y+
Sbjct: 76 KFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLH------PLEPLLDTKCDAYLQQT 129
Query: 174 NQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPL 227
+++ E +L+ LGF + ++HPH +V Q++ ++ L QTS+ + + L
Sbjct: 130 QELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD--LAQTSYFMATNSL 181
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 78.6 bits (192), Expect = 4e-15
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
++L TPS G++ D E R LIQ G L + Q+ + T V RF+ SF
Sbjct: 16 EQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFT 75
Query: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLD---QDYVNLK 173
K + +S + LA+K+EE R++ VI V H P+ LLD Y+
Sbjct: 76 KFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLH------PLEPLLDTKCDAYLQQT 129
Query: 174 NQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPL 227
+++ E +L+ LGF + ++HPH +V Q++ ++ L QTS+ + + L
Sbjct: 130 QELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD--LAQTSYFMATNSL 181
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 76.6 bits (187), Expect = 2e-14
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 57 DKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFV 116
++L +PS G+D D E R L+Q G L + Q+ + T V RF+ +SF
Sbjct: 17 EQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT 76
Query: 117 KHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQI 176
+ V+ A + LA+K+EE P+++ VI V H ++ +P + Y+ +
Sbjct: 77 QFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLH---PQESLPDTRSEAYLQQVQDL 133
Query: 177 IKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEDPL 227
+ E +L+ LGF + + HPH +V Q++ ++ L QTS+ + + L
Sbjct: 134 VILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD--LAQTSYFMATNSL 182
>gi|196049382 family with sequence similarity 58, member A isoform 1
[Homo sapiens]
Length = 248
Score = 73.2 bits (178), Expect = 2e-13
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
I AG+ L + + +AT ++ +FF + + ++M+ ++LA K+EE R RD+
Sbjct: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
Query: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
INV +R + PL LD + L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
Query: 205 QVLECERNQHLVQTSWVASEDPLLKWDSW 233
L+ N+H Q + VA L DS+
Sbjct: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSY 178
>gi|196049384 family with sequence similarity 58, member A isoform 2
[Homo sapiens]
Length = 228
Score = 73.2 bits (178), Expect = 2e-13
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
I AG+ L + + +AT ++ +FF + + ++M+ ++LA K+EE R RD+
Sbjct: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
Query: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
INV +R + PL LD + L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
Query: 205 QVLECERNQHLVQTSWVASEDPLLKWDSW 233
L+ N+H Q + VA L DS+
Sbjct: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSY 178
>gi|157502165 family with sequence similarity 58 member B [Homo
sapiens]
Length = 252
Score = 63.9 bits (154), Expect = 1e-10
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
I AG+ L + + +AT ++ +FF ++M+ ++LA K+EE P D+
Sbjct: 38 IMEAGVKLGMQSIPIATACTIYPKFFCETILDAFDPYLIAMSSIYLAGKVEEQPLWAHDI 97
Query: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
I+V +R + PL LD L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 98 ISVSNRYFNPSSE----PLGLDSRLWELRDSIVQRELLMLRVLRFQVSFQHPHKYLLYYL 153
Query: 205 QVLECERNQHLVQTSWVASEDPLLKWDSW 233
L+ N H Q + VA L DS+
Sbjct: 154 VSLKNWLNCHSWQRTPVAVTAWALLRDSY 182
>gi|61676091 cyclin C isoform a [Homo sapiens]
Length = 283
Score = 47.4 bits (111), Expect = 1e-05
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 77 LRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMA--CVHLASKI 134
L++ +IQA G L+L Q +AT V F+RF+ S S++ V MA CV LASK+
Sbjct: 40 LQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKV 97
Query: 135 EEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVK 194
EE V N K +++ N I++ E +L+ + C+ V
Sbjct: 98 EE----FGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVY 153
Query: 195 HPHKIIVMYLQ 205
HP++ ++ Y+Q
Sbjct: 154 HPYRPLLQYVQ 164
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 38.9 bits (89), Expect = 0.004
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRL---YSGVLITLE 50
AAAAAAA AA +A AAAG PG G AP I D L ++ VL +L+
Sbjct: 248 AAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQ 299
Score = 29.6 bits (65), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 8 AGAAGSAAPAAAAGAPGSGGAPSGS 32
AGA G+A P G PG GGA + +
Sbjct: 221 AGAPGAAGPGGPGGEPGKGGAAAAA 245
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 3 AAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
+ A G G +PA A GA G GG P G G
Sbjct: 207 SCGANGGGGGGPSPAGAPGAAGPGG-PGGEPG 237
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 37.7 bits (86), Expect = 0.009
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGA 28
+AAAAAA AA +A+ AAAAGAP SGG+
Sbjct: 358 SAAAAAAAAAAAASSAAAAGAPPSGGS 384
Score = 31.2 bits (69), Expect = 0.81
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 4 AAAAAGAAGSAAPAAAAGAPGSGGAPSG 31
+AA+A AA +AA AAA+ A +G PSG
Sbjct: 355 SAASAAAAAAAAAAAASSAAAAGAPPSG 382
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
AAAAAAA AA + G G GG G G
Sbjct: 398 AAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAG 430
Score = 29.3 bits (64), Expect = 3.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSG 31
AAAAAA G+ G G G GGA +G
Sbjct: 403 AAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
Score = 28.9 bits (63), Expect = 4.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGS 32
AAAA AA +AA AAAA A S A +G+
Sbjct: 348 AAAAGLNSAASAAAAAAAAAAAASSAAAAGA 378
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
AAAAAAA A GS G G GG G
Sbjct: 400 AAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
Score = 28.5 bits (62), Expect = 5.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 3 AAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIG 38
+AAAAA AA +A + G G GG G G G
Sbjct: 397 SAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
Score = 28.1 bits (61), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
++ ++ + AA +AA AAA G+ G GG G G
Sbjct: 390 LSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGG 423
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 36.6 bits (83), Expect = 0.019
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
A A AAAGAAG+AA A A A G G A +G+ G
Sbjct: 27 AGALAAAGAAGAAAGGALAAAAGCGAAAAGAPG 59
Score = 34.7 bits (78), Expect = 0.073
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 1 MAAAAAAAGAAGSA------APAAAAGAPGSGGAPSGSQGVLIG 38
+AAA AA AAG A AAAAGAPG+GGA +G+ G G
Sbjct: 30 LAAAGAAGAAAGGALAAAAGCGAAAAGAPGAGGA-AGAGGAGTG 72
Score = 32.3 bits (72), Expect = 0.36
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 3 AAAAAAGAAGSAAPAAAAGAPGSGGAPSGS 32
AAAA GAA + AP A GA G+GGA +G+
Sbjct: 45 AAAAGCGAAAAGAPGAG-GAAGAGGAGTGA 73
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 35.8 bits (81), Expect = 0.033
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
+AAAAAA AA +AA AA AGAP G A + G
Sbjct: 168 SAAAAAAAAAAAAAAAAGAGAPSVGAAGAADGG 200
Score = 33.9 bits (76), Expect = 0.13
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIG 38
+AAA +A AA +AA AAAA A G+G G+ G G
Sbjct: 163 SAAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADG 199
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
AA +AAA +A +AA AAAA A + GA + S G
Sbjct: 160 AATSAAATSAAAAAAAAAAAAAAAAGAGAPSVG 192
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQ 33
AAAAAAA AA +AA A A +G A G +
Sbjct: 171 AAAAAAAAAAAAAAGAGAPSVGAAGAADGGDE 202
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 35.4 bits (80), Expect = 0.043
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQ 33
AAAAAAA AA +AA A+++G PG G P+G++
Sbjct: 118 AAAAAAAAAAAAAAAASSSGGPGPAG-PAGAE 148
Score = 33.5 bits (75), Expect = 0.16
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 3 AAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
+AAAAA AA +AA AAAA + G P+G G
Sbjct: 115 SAAAAAAAAAAAAAAAAAASSSGGPGPAGPAG 146
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAP 29
A +AAA AA +AA AAAA A S G P
Sbjct: 112 APPSAAAAAAAAAAAAAAAAAASSSGGP 139
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSG 31
AAAAAAA AA +AA A G P A +G
Sbjct: 38 AAAAAAAAAAAAAAGAGGGGFPHPAAAAAG 67
Score = 29.6 bits (65), Expect = 2.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQ 33
AAAAAAA AA +A+ + G G GA + Q
Sbjct: 121 AAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQ 152
Score = 27.7 bits (60), Expect = 9.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 9 GAAGSAAPAAAAGAPGSGG 27
GAA +AA AAAA A G+GG
Sbjct: 37 GAAAAAAAAAAAAAAGAGG 55
>gi|39995084 integrator complex subunit 3 [Homo sapiens]
Length = 1042
Score = 35.4 bits (80), Expect = 0.043
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSG 26
AAAAAA+GAAG A AGAPG G
Sbjct: 10 AAAAAASGAAGGGGGGAGAGAPGGG 34
Score = 28.1 bits (61), Expect = 6.9
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 12 GSAAPAAAAGAPGSGGAPSGSQGVLIGDRL 41
G+AA AAA+GA G GG +G+ G G RL
Sbjct: 8 GAAAAAAASGAAGGGGGGAGA-GAPGGGRL 36
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 34.7 bits (78), Expect = 0.073
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLY 42
AA+A AG AG PA+A G G GG G G L+
Sbjct: 207 AASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALH 247
Score = 31.2 bits (69), Expect = 0.81
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
A A GAAGSAA A+A GA G+GG S G
Sbjct: 197 AGAPGAAGSAA-ASAGGAGGAGGGGPASAG 225
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 34.7 bits (78), Expect = 0.073
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLY 42
AA+A AG AG PA+A G G GG G G L+
Sbjct: 207 AASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALH 247
Score = 31.2 bits (69), Expect = 0.81
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
A A GAAGSAA A+A GA G+GG S G
Sbjct: 197 AGAPGAAGSAA-ASAGGAGGAGGGGPASAG 225
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 34.7 bits (78), Expect = 0.073
Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 2 AAAAAAAGAAGSAAPAAA--AGAPGSGGAPSGSQG 34
AAAAAAA AA +AA +A G GSGGA GS G
Sbjct: 457 AAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGG 491
Score = 29.6 bits (65), Expect = 2.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
AAAAAAA A + +G+ G+GG G G
Sbjct: 462 AAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSG 494
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 2 AAAAAAAGAAGSAA--PAAAAGAPGSGGAPSGSQGVLIG 38
AAAAAA G AG+A+ P A GAPG G P+G G+ G
Sbjct: 228 AAAAAAPGPAGAASPHPPAVGGAPGPG--PAGPGGLHAG 264
Score = 31.6 bits (70), Expect = 0.62
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 5 AAAAGAAGSAAPAAAAGAPGSGGAPS 30
A AGAA +A AAAA APG GA S
Sbjct: 216 ALGAGAAAGSAAAAAAAAPGPAGAAS 241
Score = 28.1 bits (61), Expect = 6.9
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 3 AAAAAAGAAGSAAPAAAAGA----PGSGGAP 29
AAA +A AA +AAP A A P GGAP
Sbjct: 221 AAAGSAAAAAAAAPGPAGAASPHPPAVGGAP 251
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 33.1 bits (74), Expect = 0.21
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 5 AAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDR 40
AAAA AA +AA AA A P + G+ SG++GV + +
Sbjct: 435 AAAAAAAAAAAAAAVAAPPTAVGSLSGAEGVPVSSQ 470
Score = 32.0 bits (71), Expect = 0.48
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQ 33
AAAAAAA AA +A P A G+ G P SQ
Sbjct: 439 AAAAAAAAAAVAAPPTAVGSLSGAEGVPVSSQ 470
Score = 28.1 bits (61), Expect = 6.9
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGS 25
+AAAAAA AA +AA AAA AP +
Sbjct: 95 SAAAAAAAAAAAAAVAAAPPAPAA 118
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAP 29
AAA AA AAG+AA A + APG AP
Sbjct: 5 AAAVAAGAAAGAAAAAVSVAAPGRASAP 32
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 32.7 bits (73), Expect = 0.28
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAP---GSGGAPSGS 32
AAAAAAA AA +AA AAAA P G GG+ G+
Sbjct: 199 AAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGA 232
Score = 31.6 bits (70), Expect = 0.62
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPS-GSQG 34
AAA AAA AA +A P+ G GGA S G+QG
Sbjct: 206 AAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQG 239
Score = 31.2 bits (69), Expect = 0.81
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
AAAAAAA A +AA AAA + GG G G
Sbjct: 201 AAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAG 233
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/32 (59%), Positives = 19/32 (59%)
Query: 3 AAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG 34
AAAAAA AA AA AAAA A S GS G
Sbjct: 199 AAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGG 230
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 32.7 bits (73), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAPS 30
A AAA AG+ G+ P +G GSGG P+
Sbjct: 49 APAAAPAGSTGTGGPGVGSGGAGSGGDPA 77
>gi|157743247 F-box protein 45 [Homo sapiens]
Length = 286
Score = 32.7 bits (73), Expect = 0.28
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVL 46
MAA A AGAA A + GA G+ SG+ G G RL S VL
Sbjct: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGA--GGRLPSRVL 44
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 32.7 bits (73), Expect = 0.28
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 2 AAAAAAAGAAGSAAPAAAAGAPGSGGAP 29
AAAAA AGA +AA A G+PG G+P
Sbjct: 46 AAAAAGAGAGAAAAGAEGPGSPGVPGSP 73
Score = 32.3 bits (72), Expect = 0.36
Identities = 19/30 (63%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 2 AAAAAAAGAAGSAAPAAAAGA--PGSGGAP 29
AA AA AAG+ A AAAAGA PGS G P
Sbjct: 41 AAEGEAAAAAGAGAGAAAAGAEGPGSPGVP 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,168,626
Number of Sequences: 37866
Number of extensions: 412063
Number of successful extensions: 7323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 5183
Number of HSP's gapped (non-prelim): 1618
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.