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Search of human proteins with 221139802
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221139802 RNA binding motif protein 24 isoform 1 [Homo
sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 474 e-134
gi|23308561 RNA binding motif protein 24 isoform 2 [Homo sapiens] 360 e-100
gi|221139804 RNA binding motif protein 24 isoform 3 [Homo sapiens] 356 8e-99
gi|34577107 RNA-binding region containing protein 1 isoform a [H... 298 3e-81
gi|34577105 RNA-binding region containing protein 1 isoform b [H... 186 2e-47
gi|25121993 musashi 2 isoform b [Homo sapiens] 72 5e-13
gi|20373175 musashi 2 isoform a [Homo sapiens] 71 7e-13
gi|4505255 musashi 1 [Homo sapiens] 67 1e-11
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 66 2e-11
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 66 2e-11
gi|14719414 boule isoform 2 [Homo sapiens] 65 4e-11
gi|37574731 boule isoform 1 [Homo sapiens] 65 4e-11
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 63 2e-10
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 63 3e-10
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 63 3e-10
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 62 3e-10
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 62 3e-10
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 62 4e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 62 4e-10
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 62 4e-10
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 62 6e-10
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 62 6e-10
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 61 1e-09
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 61 1e-09
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 61 1e-09
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 61 1e-09
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 61 1e-09
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 59 3e-09
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 59 3e-09
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 59 3e-09
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
Length = 236
Score = 474 bits (1219), Expect = e-134
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH 120
DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH 120
Query: 121 YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA 180
YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA
Sbjct: 121 YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA 180
Query: 181 SPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 236
SPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
Sbjct: 181 SPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 236
>gi|23308561 RNA binding motif protein 24 isoform 2 [Homo sapiens]
Length = 191
Score = 360 bits (923), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 57 VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFG 116
VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFG
Sbjct: 12 VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFG 71
Query: 117 IPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQY 176
IPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQY
Sbjct: 72 IPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQY 131
Query: 177 PYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 236
PYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
Sbjct: 132 PYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 191
>gi|221139804 RNA binding motif protein 24 isoform 3 [Homo sapiens]
Length = 178
Score = 356 bits (914), Expect = 8e-99
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 60
Query: 119 AHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPY 178
AHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPY
Sbjct: 61 AHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPY 120
Query: 179 AASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 236
AASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
Sbjct: 121 AASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 178
>gi|34577107 RNA-binding region containing protein 1 isoform a [Homo
sapiens]
Length = 239
Score = 298 bits (763), Expect = 3e-81
Identities = 162/238 (68%), Positives = 174/238 (73%), Gaps = 24/238 (10%)
Query: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
MH +QKDTT+TKIFVGGLPYHTTDASLRKYFE FG+IEEAVVITDRQTGKSRGYGFVTMA
Sbjct: 24 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 83
Query: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH 120
DRAAAERACKDPNPIIDGRKANVNLAYLGAKPR +Q GFA GVQQLHP LIQR +G+ H
Sbjct: 84 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPH 143
Query: 121 YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGA--AYAQYSAAAAAAAAAAAYDQYPY 178
Y+YP A VQP VVIP P + +S PYI+YT A AYAQY A YDQYPY
Sbjct: 144 YIYPPAIVQPSVVIP-AAPVPSLSS--PYIEYTPASPAYAQY--------PPATYDQYPY 192
Query: 179 AASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ 236
AASPA A Y AV Q ++AAAP A F QYQ QLQ DRMQ
Sbjct: 193 AASPATAASFVGYSYPAAVPQALSAAAP-----------AGTTFVQYQAPQLQPDRMQ 239
>gi|34577105 RNA-binding region containing protein 1 isoform b [Homo
sapiens]
Length = 121
Score = 186 bits (472), Expect = 2e-47
Identities = 90/98 (91%), Positives = 94/98 (95%)
Query: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
MH +QKDTT+TKIFVGGLPYHTTDASLRKYFE FG+IEEAVVITDRQTGKSRGYGFVTMA
Sbjct: 24 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 83
Query: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPG 98
DRAAAERACKDPNPIIDGRKANVNLAYLGAKPR +Q G
Sbjct: 84 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTG 121
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 71.6 bits (174), Expect = 5e-13
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
+K+F+GGL + T+ SLR YF FGEI E +V+ D T +SRG+GFVT AD A+ ++
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
P+ +D + + +A+ PR QP
Sbjct: 77 QPHHELDSKTIDPKVAF----PRRAQP 99
Score = 60.8 bits (146), Expect = 1e-09
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 8 TTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
T KIFVGGL +T +++YFE FG++E+A+++ D+ T + RG+GFVT + E+
Sbjct: 103 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 162
Query: 68 ACK 70
C+
Sbjct: 163 VCE 165
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 71.2 bits (173), Expect = 7e-13
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+F+GGL + T+ SLR YF FGEI E +V+ D T +SRG+GFVT AD A+ ++
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 72 PNPIIDGRKANVNLAYLGAKPRIMQP 97
P+ +D + + +A+ PR QP
Sbjct: 82 PHHELDSKTIDPKVAF----PRRAQP 103
Score = 65.1 bits (157), Expect = 5e-11
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 46/230 (20%)
Query: 8 TTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
T KIFVGGL +T +++YFE FG++E+A+++ D+ T + RG+GFVT + E+
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 68 AC-----KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYV 122
C + N +++ +KA K + PG + L P+ + A +
Sbjct: 167 VCEIHFHEINNKMVECKKAQ-------PKEVMFPPGTRGRARGL-------PYTMDAFML 212
Query: 123 YPQAFVQPGVVIPHVQ--PTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQ----- 175
P V + + P A + + + AAY +AAA AAA + +
Sbjct: 213 GMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGG 272
Query: 176 YPYAASP--------------AAAGYVTA------GGYGYAVQQPITAAA 205
+P A SP Y++A G+G+ + P+ A A
Sbjct: 273 FPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATA 322
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+F+GGL + TT LR+YF FGE++E +V+ D T +SRG+GFVT D+A ++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 72 PNPIIDGRKANVNLAYLGAKPRIMQP 97
+D + + +A+ PR QP
Sbjct: 81 SRHELDSKTIDPKVAF----PRRAQP 102
Score = 67.4 bits (163), Expect = 1e-11
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 8 TTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
T KIFVGGL +TT +++YFE FG++++A+++ D+ T + RG+GFVT E+
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 68 AC-----KDPNPIIDGRKANVN--LAYLGA---KPRIMQPG---FAFGVQQL-HPALIQR 113
C + N +++ +KA ++ G+ + R+M G F G+ L +P
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQAT 225
Query: 114 PFGIPAH--------YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAA 165
+ ++ Y +P+ V+ + P+A I T AY +AAAA
Sbjct: 226 TYASRSYTGLAPGYTYQFPEFRVERTPL-----PSAPVLPELTAIPLT--AYGPMAAAAA 278
Query: 166 AAAAAAAYDQYPYA-ASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQ 224
AAA +P+ A P + GG+ + +PG A AA +
Sbjct: 279 AAAVVRGTGSHPWTMAPPPGSTPSRTGGF-------LGTTSPGPMAELYGAANQDSGVSS 331
Query: 225 Y 225
Y
Sbjct: 332 Y 332
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T K+FVGG+ T + LR YFE +G+I+ +ITDRQ+GK RG+GFVT D ++
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 69 CKDPNPIIDGRKANVNLA 86
I+G A V A
Sbjct: 170 VLQKYHTINGHNAEVRKA 187
Score = 63.5 bits (153), Expect = 1e-10
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 10 YTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
+ K+F+GGL + TT+ SLR Y+E +G++ + VV+ D + +SRG+GFVT + A + A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106
IDGR A A+ +PG V++L
Sbjct: 80 AARPHSIDGRVVEPKRAV--AREESGKPGAHVTVKKL 114
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T K+FVGG+ T + LR YFE +G+I+ +ITDRQ+GK RG+GFVT D ++
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 69 CKDPNPIIDGRKANVNLA 86
I+G A V A
Sbjct: 158 VLQKYHTINGHNAEVRKA 175
Score = 63.5 bits (153), Expect = 1e-10
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 10 YTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
+ K+F+GGL + TT+ SLR Y+E +G++ + VV+ D + +SRG+GFVT + A + A
Sbjct: 8 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
Query: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106
IDGR A A+ +PG V++L
Sbjct: 68 AARPHSIDGRVVEPKRAV--AREESGKPGAHVTVKKL 102
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 65.5 bits (158), Expect = 4e-11
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
+IFVGG+ + T ++ LRK+F +G ++E ++ DR G S+GYGFVT + A++ ++
Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92
Query: 72 PNPI-IDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQA---F 127
+ +K N+ PA+ ++ GIP + P A +
Sbjct: 93 AEKLNYKDKKLNIG-----------------------PAIRKQQVGIPRSSIMPAAGTMY 129
Query: 128 VQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGY 187
+ P+ A TP + + S ++ A Q P A Y
Sbjct: 130 LTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQY 189
Query: 188 VTAGGYGYAVQQPITAAAP 206
+ G + ++V QP ++AP
Sbjct: 190 L-PGQWQWSVPQPSASSAP 207
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 65.5 bits (158), Expect = 4e-11
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
+IFVGG+ + T ++ LRK+F +G ++E ++ DR G S+GYGFVT + A++ ++
Sbjct: 46 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 104
Query: 72 PNPI-IDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQA---F 127
+ +K N+ PA+ ++ GIP + P A +
Sbjct: 105 AEKLNYKDKKLNIG-----------------------PAIRKQQVGIPRSSIMPAAGTMY 141
Query: 128 VQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGY 187
+ P+ A TP + + S ++ A Q P A Y
Sbjct: 142 LTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQY 201
Query: 188 VTAGGYGYAVQQPITAAAP 206
+ G + ++V QP ++AP
Sbjct: 202 L-PGQWQWSVPQPSASSAP 219
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 63.2 bits (152), Expect = 2e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 2 HTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMAD 61
H ++ K+F+GGL + TTD SLR++FE +G + + VV+ D QT +SRG+GFVT +
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 62 RAAAERA-CKDPNPIIDGR 79
+ A C P+ +DGR
Sbjct: 86 VEEVDAAMCARPHK-VDGR 103
Score = 62.4 bits (150), Expect = 3e-10
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T KIFVGG+ T + +LR YFE +G+IE V+ DRQ+GK RG+ FVT D ++
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 69 CKDPNPIIDGRKANVNLA 86
I+G V A
Sbjct: 184 VVQKYHTINGHNCEVKKA 201
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 62.8 bits (151), Expect = 3e-10
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+FVGGL + T + SL + F +G+I E VV+ DR+T +SRG+GFVT + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 72 PN-PIIDGRKANVNLA 86
N +DGR+ V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 62.8 bits (151), Expect = 3e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+FVGGL ++T + +L +F FG I E VV+ DR+T +SRG+GF+T + A A +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 72 PN-PIIDGRKANVNLAYLGAK 91
N +DGR+ V+ A A+
Sbjct: 67 MNGESLDGRQIRVDHAGKSAR 87
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 62.4 bits (150), Expect = 3e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 72 PNPIIDGR 79
+DGR
Sbjct: 75 TPHKVDGR 82
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T KIFVGG+ T + LR YFE +G+IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 69 CKDPNPIIDGRKANVNLA 86
+ G V A
Sbjct: 163 VIQKYHTVKGHNCEVRKA 180
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 62.4 bits (150), Expect = 3e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 72 PNPIIDGR 79
+DGR
Sbjct: 75 TPHKVDGR 82
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T KIFVGG+ T + LR YFE +G+IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 69 CKDPNPIIDGRKANVNLA 86
+ G V A
Sbjct: 163 VIQKYHTVKGHNCEVRKA 180
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 62.0 bits (149), Expect = 4e-10
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+FVGGL + TT +LR YF +GE+ + V++ D+ T +SRG+GFV D
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 72 PNPIIDGRKANVNLAYLGAKPRIMQP 97
+DGR N+ PR MQP
Sbjct: 71 RPHTLDGR----NIDPKPCTPRGMQP 92
Score = 60.8 bits (146), Expect = 1e-09
Identities = 62/224 (27%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
KIFVGG+P++ + LR+YF+ FG + E V+I D + + RG+GF+T D + ++A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 72 PNPIIDGRKANVNLAYLGAKPRIM------QPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
I G+K V A+PR QPG + ++ P G P + Q
Sbjct: 174 HFHDIMGKKVEVK----RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPP-TWQQ 228
Query: 126 AFVQPGVVIPHVQ-------PTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPY 178
+ G+ +P Q P A + P +T S + Q Y
Sbjct: 229 GYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYI---VSTPPGGFPPPQGFPQ-GY 284
Query: 179 AASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAF 222
A P + GYG P A PG A AA AF
Sbjct: 285 GAPPQ-----FSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAF 323
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 62.0 bits (149), Expect = 4e-10
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+FVGGL + TT +LR YF +GE+ + V++ D+ T +SRG+GFV D
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 72 PNPIIDGRKANVNLAYLGAKPRIMQP 97
+DGR N+ PR MQP
Sbjct: 71 RPHTLDGR----NIDPKPCTPRGMQP 92
Score = 60.8 bits (146), Expect = 1e-09
Identities = 62/224 (27%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
KIFVGG+P++ + LR+YF+ FG + E V+I D + + RG+GF+T D + ++A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 72 PNPIIDGRKANVNLAYLGAKPRIM------QPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
I G+K V A+PR QPG + ++ P G P + Q
Sbjct: 174 HFHDIMGKKVEVK----RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPP-TWQQ 228
Query: 126 AFVQPGVVIPHVQ-------PTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPY 178
+ G+ +P Q P A + P +T S + Q Y
Sbjct: 229 GYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYI---VSTPPGGFPPPQGFPQ-GY 284
Query: 179 AASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAF 222
A P + GYG P A PG A AA AF
Sbjct: 285 GAPPQ-----FSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAF 323
Score = 28.1 bits (61), Expect = 6.9
Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 12/132 (9%)
Query: 102 GVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYS 161
G Q + A Q FG P F PGV P P AA + P
Sbjct: 279 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPP---------PPSQ 329
Query: 162 AAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYA--VQQPITAAAPGTAAAAAAAAAAA 219
AA + A +PY ++ G G++ QQP + P + + A
Sbjct: 330 AAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYGGP-SVPGSGGPPAGG 388
Query: 220 AAFGQYQPQQLQ 231
+ FG+ Q +Q
Sbjct: 389 SGFGRGQNHNVQ 400
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 62.0 bits (149), Expect = 4e-10
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 31/241 (12%)
Query: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
++ +T ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 104 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSA 161
Query: 64 AAERAC-KDPNPIIDGRKANVN--LAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH 120
A+RA K +++GRK VN A + +++ P +A G +L P ++ +G P
Sbjct: 162 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTP-YANG-WKLSP-VVGAVYG-PEL 217
Query: 121 YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAY------- 173
Y + P + YI + +AA AAA A+
Sbjct: 218 YAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRT 277
Query: 174 -----DQYPYAASPAAAGYVTAGGY-------GYAVQQPITAAAPGTAAAAAAAAAAAAA 221
P A PA G V G+ GYA + A P TA AA AAAAAAAA
Sbjct: 278 VYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYR---YAQPATATAATAAAAAAAA 334
Query: 222 F 222
+
Sbjct: 335 Y 335
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 61.6 bits (148), Expect = 6e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 72 PNPIIDGR 79
+DGR
Sbjct: 75 RPHKVDGR 82
Score = 60.1 bits (144), Expect = 2e-09
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T KIFVGG+ T + LR YFE +G+IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 69 CKDPNPIIDGRKANVNLA 86
++G V A
Sbjct: 163 VIQKYHTVNGHNCEVRKA 180
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 61.6 bits (148), Expect = 6e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+F+GGL + TTD SLR +FE +G + + VV+ D T +SRG+GFVT A + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 72 PNPIIDGR 79
+DGR
Sbjct: 75 RPHKVDGR 82
Score = 60.1 bits (144), Expect = 2e-09
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
T KIFVGG+ T + LR YFE +G+IE ++TDR +GK RG+ FVT D + ++
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 69 CKDPNPIIDGRKANVNLA 86
++G V A
Sbjct: 163 VIQKYHTVNGHNCEVRKA 180
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 60.8 bits (146), Expect = 1e-09
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
++ +T ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 174 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 231
Query: 64 AAERAC-KDPNPIIDGRKANVN--LAYLGAKPRIMQP-----------GFAFGVQQLHPA 109
A+RA K +++GRK VN A + +++ P G +G + +
Sbjct: 232 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAAS 291
Query: 110 LIQRPFGIPAHYVYPQAFVQPGV--VIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAA 167
Q + P + + G+ IP + P T AA+
Sbjct: 292 SFQADVSLGNDAAVPLSG-RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGR 350
Query: 168 AAAAAYDQYPYAASPAAAGYVTAGGY-------GYAVQQPITAAAPGTAAAAAAAAAAAA 220
A P A PA G V G+ GYA + A P TA AA AAAAAAA
Sbjct: 351 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYR---YAQPATATAATAAAAAAA 407
Query: 221 AF 222
A+
Sbjct: 408 AY 409
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 149 YIDYTGAAYAQYSAAAAAAAAAAAY-DQY-------PYAASPAAAGY 187
Y Y A A +AA AAAAAAAAY D Y PY A AA Y
Sbjct: 385 YAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASY 431
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 60.8 bits (146), Expect = 1e-09
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
++ +T ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 175 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 232
Query: 64 AAERAC-KDPNPIIDGRKANVN--LAYLGAKPRIMQP-----------GFAFGVQQLHPA 109
A+RA K +++GRK VN A + +++ P G +G + +
Sbjct: 233 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAAS 292
Query: 110 LIQRPFGIPAHYVYPQAFVQPGV--VIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAA 167
Q + P + + G+ IP + P T AA+
Sbjct: 293 SFQADVSLGNDAAVPLSG-RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGR 351
Query: 168 AAAAAYDQYPYAASPAAAGYVTAGGY-------GYAVQQPITAAAPGTAAAAAAAAAAAA 220
A P A PA G V G+ GYA + A P TA AA AAAAAAA
Sbjct: 352 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYR---YAQPATATAATAAAAAAA 408
Query: 221 AF 222
A+
Sbjct: 409 AY 410
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 149 YIDYTGAAYAQYSAAAAAAAAAAAY-DQY-------PYAASPAAAGY 187
Y Y A A +AA AAAAAAAAY D Y PY A AA Y
Sbjct: 386 YAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASY 432
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 60.8 bits (146), Expect = 1e-09
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
++ +T ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 104 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 161
Query: 64 AAERAC-KDPNPIIDGRKANVN--LAYLGAKPRIMQP-----------GFAFGVQQLHPA 109
A+RA K +++GRK VN A + +++ P G +G + +
Sbjct: 162 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAAS 221
Query: 110 LIQRPFGIPAHYVYPQAFVQPGV--VIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAA 167
Q + P + + G+ IP + P T AA+
Sbjct: 222 SFQADVSLGNDAAVPLSG-RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGR 280
Query: 168 AAAAAYDQYPYAASPAAAGYVTAGGY-------GYAVQQPITAAAPGTAAAAAAAAAAAA 220
A P A PA G V G+ GYA + A P TA AA AAAAAAA
Sbjct: 281 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYR---YAQPATATAATAAAAAAA 337
Query: 221 AF 222
A+
Sbjct: 338 AY 339
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 149 YIDYTGAAYAQYSAAAAAAAAAAAY-DQY-------PYAASPAAAGY 187
Y Y A A +AA AAAAAAAAY D Y PY A AA Y
Sbjct: 315 YAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASY 361
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 60.8 bits (146), Expect = 1e-09
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+FVGGL + T+ L+ YF FGE+ + + D TG+SRG+GF+ D A+ E+
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 72 PNPIIDGR 79
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 50.8 bits (120), Expect = 1e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
KIFVGGL T+ +R+YF FGEIE + D + K RG+ F+T + ++ +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 72 PNPIIDGRKANVNLA 86
+ G K + +A
Sbjct: 215 KFHTVSGSKCEIKVA 229
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 60.8 bits (146), Expect = 1e-09
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
K+FVGGL + T+ L+ YF FGE+ + + D TG+SRG+GF+ D A+ E+
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 72 PNPIIDGR 79
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 50.8 bits (120), Expect = 1e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
KIFVGGL T+ +R+YF FGEIE + D + K RG+ F+T + ++ +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 72 PNPIIDGRKANVNLA 86
+ G K + +A
Sbjct: 215 KFHTVSGSKCEIKVA 229
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 59.3 bits (142), Expect = 3e-09
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
+++VG L ++ T+ LR FE FG+I+ V++ D TG+S+GYGF+T +D A RA +
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 72 PN 73
N
Sbjct: 290 LN 291
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 59.3 bits (142), Expect = 3e-09
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
+++VG L ++ T+ LR FE FG+I+ V++ D TG+S+GYGF+T +D A RA +
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 72 PN 73
N
Sbjct: 324 LN 325
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 59.3 bits (142), Expect = 3e-09
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
+++VG L ++ T+ LR FE FG+I+ V++ D TG+S+GYGF+T +D A RA +
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 72 PN 73
N
Sbjct: 308 LN 309
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,906,581
Number of Sequences: 37866
Number of extensions: 408026
Number of successful extensions: 7528
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 3349
Number of HSP's gapped (non-prelim): 2325
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.