Search of human proteins with 11496974

Search of human proteins with 11496974

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11496974 nuclear transcription factor Y, alpha isoform 2
[Homo sapiens]
         (318 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11496974 nuclear transcription factor Y, alpha isoform 2 [Hom...   618   e-177
gi|4505389 nuclear transcription factor Y, alpha isoform 1 [Homo...   603   e-173
gi|67010025 Sp4 transcription factor [Homo sapiens]                    53   4e-07
gi|217272833 nuclear transcription factor Y, gamma isoform 4 [Ho...    52   7e-07
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom...    52   7e-07
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho...    50   2e-06
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho...    50   3e-06
gi|221139761 zinc finger protein 853 [Homo sapiens]                    45   7e-05
gi|15812226 transcriptional regulating factor 1 [Homo sapiens]         45   9e-05
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    45   1e-04
gi|125625357 Sp2 transcription factor [Homo sapiens]                   44   2e-04
gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]                  44   2e-04
gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]                   44   2e-04
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo...    43   3e-04
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo...    43   3e-04
gi|38788274 bromodomain PHD finger transcription factor isoform ...    43   4e-04
gi|38372901 Sp1 transcription factor isoform a [Homo sapiens]          42   6e-04
gi|218751903 Sp1 transcription factor isoform b [Homo sapiens]         42   6e-04
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho...    42   7e-04
gi|27477113 sterol regulatory element-binding transcription fact...    41   0.002
gi|122937388 MAX gene associated [Homo sapiens]                        40   0.002
gi|17017963 forkhead box P2 isoform I [Homo sapiens]                   40   0.003
gi|22538413 forkhead box P2 isoform III [Homo sapiens]                 40   0.003
gi|149999352 forkhead box P2 isoform II [Homo sapiens]                 40   0.003
gi|19923559 EMSY protein [Homo sapiens]                                40   0.004
gi|44890059 involucrin [Homo sapiens]                                  39   0.005
gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens]          39   0.006
gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens]          39   0.006
gi|56549696 E1A binding protein p400 [Homo sapiens]                    39   0.006
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]       39   0.006

>gi|11496974 nuclear transcription factor Y, alpha isoform 2 [Homo
           sapiens]
          Length = 318

 Score =  618 bits (1594), Expect = e-177
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT 60
           MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT
Sbjct: 1   MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQT 60

Query: 61  IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ 120
           IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ
Sbjct: 61  IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ 120

Query: 121 QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN 180
           QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN
Sbjct: 121 QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGAN 180

Query: 181 TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA 240
           TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA
Sbjct: 181 TNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNA 240

Query: 241 KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM 300
           KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM
Sbjct: 241 KQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHM 300

Query: 301 QDPNQADEEAMTQIIRVS 318
           QDPNQADEEAMTQIIRVS
Sbjct: 301 QDPNQADEEAMTQIIRVS 318


>gi|4505389 nuclear transcription factor Y, alpha isoform 1 [Homo
           sapiens]
          Length = 347

 Score =  603 bits (1554), Expect = e-173
 Identities = 318/347 (91%), Positives = 318/347 (91%), Gaps = 29/347 (8%)

Query: 1   MEQYTANSNSSTEQIVVQAGQIQQQ-----------------------------VQGQPL 31
           MEQYTANSNSSTEQIVVQAGQIQQQ                             VQGQPL
Sbjct: 1   MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPL 60

Query: 32  MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV 91
           MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV
Sbjct: 61  MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV 120

Query: 92  QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL 151
           QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL
Sbjct: 121 QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL 180

Query: 152 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV 211
           QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV
Sbjct: 181 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV 240

Query: 212 PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH 271
           PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH
Sbjct: 241 PGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLH 300

Query: 272 ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 318
           ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS
Sbjct: 301 ESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 347


>gi|67010025 Sp4 transcription factor [Homo sapiens]
          Length = 784

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 67/234 (28%), Positives = 92/234 (39%), Gaps = 40/234 (17%)

Query: 3   QYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIM 62
           QY + S SS+E+ + ++     Q          S  QL     QP  +Q     Q  ++ 
Sbjct: 346 QYASTSASSSERTIEES-----QTPAATESEAQSSSQL-----QPNGMQNAQD-QSNSLQ 394

Query: 63  QVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQP-------------- 108
           QV + G   LQQIQ+  P Q  IQ       Q Q GQT Q I QQP              
Sbjct: 395 QVQIVGQPILQQIQIQQPQQQIIQAIPPQSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQV 454

Query: 109 ----QTAVTAGQ-----TQTQQQIAVQGQQVAQTAEGQTIVYQPVNADG--TILQQVTVP 157
                T   +GQ      Q Q   ++   QV      Q +   PV++ G  T+ Q   V 
Sbjct: 455 LIRAPTLTPSGQISWQTVQVQNIQSLSNLQVQNAGLSQQLTITPVSSSGGTTLAQIAPVA 514

Query: 158 VSGM-ITIPAASLAGAQIVQTGANTNTTSSG---QGTVTVTLPVAGNVVNSGGM 207
           V+G  IT+  A LA    +QT +  N  ++G   QG       VAG      G+
Sbjct: 515 VAGAPITLNTAQLASVPNLQTVSVANLGAAGVQVQGVPVTITSVAGQQQGQDGV 568



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 28/222 (12%)

Query: 7   NSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPV 66
           N  +  +QI++   Q   Q+Q QP  +++   QL  +  Q  +V + P    +  +  P 
Sbjct: 64  NQATGQQQIIIDPSQGLVQLQNQPQQLELVTTQLAGNAWQ--LVASTPPASKENNVSQPA 121

Query: 67  SGTQGLQQIQLVPPGQIQIQGG--------QAVQVQGQQGQTQQIIIQQPQTA----VTA 114
           S +              + + G        Q +QVQ   G  Q  +I Q QT     +  
Sbjct: 122 SSSSSSSSSNNGSASPTKTKSGNSSTPGQFQVIQVQNPSGSVQYQVIPQLQTVEGQQIQI 181

Query: 115 GQTQTQQQIAVQGQQVAQTAEGQTIVYQPVN--ADGTILQQ----VTVPV----SGMITI 164
             T +     +QGQ    +A     +    N  A G IL Q     TVPV       I +
Sbjct: 182 NPTSSSSLQDLQGQIQLISAGNNQAILTAANRTASGNILAQNLANQTVPVQIRPGVSIPL 241

Query: 165 PAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGG 206
              +L G Q         T     G VT+ LPV  NV   GG
Sbjct: 242 QLQTLPGTQ----AQVVTTLPINIGGVTLALPVINNVAAGGG 279



 Score = 29.6 bits (65), Expect = 3.7
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 22  IQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVS---GTQGLQQIQLV 78
           + Q +  Q + VQ+  G  I     P+ +Q +PG Q Q +  +P++    T  L  I  V
Sbjct: 220 LAQNLANQTVPVQIRPGVSI-----PLQLQTLPGTQAQVVTTLPINIGGVTLALPVINNV 274

Query: 79  PPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ 120
             G    Q GQ              ++  P    T+  T  +
Sbjct: 275 AAGGGTGQVGQPAATADSGTSNGNQLVSTPTNTTTSASTMPE 316


>gi|217272833 nuclear transcription factor Y, gamma isoform 4 [Homo
           sapiens]
          Length = 297

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 38/179 (21%)

Query: 2   EQYTANSNSSTEQIVVQAGQI----QQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQ 57
           +Q    + SST  I  Q GQI     QQ Q  P+ +QV  GQ +       +VQA P GQ
Sbjct: 122 QQQGQQTTSSTTTI--QPGQIIIAQPQQGQTTPVTMQVGEGQQVQ------IVQAQPQGQ 173

Query: 58  GQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQP--------- 108
            Q          Q +QQI +   G+IQ      + VQ   GQ Q I + QP         
Sbjct: 174 AQQAQSGTGQTMQVMQQI-ITNTGEIQ-----QIPVQLNAGQLQYIRLAQPVSGTQVVQG 227

Query: 109 --QTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIP 165
             QT  T  Q  TQ ++    QQ +Q  +GQ + YQ        +QQVT+P    +  P
Sbjct: 228 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQQL-YQ--------IQQVTMPAGQDLAQP 277



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 25/146 (17%)

Query: 60  TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ------------QIIIQ 106
           T+ Q P +   QG QQ Q        IQ GQ +  Q QQGQT             QI+  
Sbjct: 109 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 168

Query: 107 QPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPA 166
           QPQ      Q+ T Q + V  Q +  T E Q I   PV  +   LQ + +         A
Sbjct: 169 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI---PVQLNAGQLQYIRL---------A 216

Query: 167 ASLAGAQIVQTGANTNTTSSGQGTVT 192
             ++G Q+VQ    T  T++ Q T T
Sbjct: 217 QPVSGTQVVQGQIQTLATNAQQITQT 242



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 35/186 (18%)

Query: 25  QVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQI- 83
           QVQGQ    Q +        GQ I+ Q   G      MQ  V   Q +Q +Q  P GQ  
Sbjct: 118 QVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQ--VGEGQQVQIVQAQPQGQAQ 175

Query: 84  QIQGG------------------QAVQVQGQQGQTQQIIIQQP--QTAVTAGQTQTQQQI 123
           Q Q G                  Q + VQ   GQ Q I + QP   T V  GQ QT   +
Sbjct: 176 QAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQT---L 232

Query: 124 AVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAA-SLAGAQIVQTGANTN 182
           A   QQ+ QT   Q         DG  L Q+       +T+PA   LA    +Q   + N
Sbjct: 233 ATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQ-----QVTMPAGQDLAQPMFIQ---SAN 284

Query: 183 TTSSGQ 188
             S GQ
Sbjct: 285 QPSDGQ 290


>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
           sapiens]
          Length = 335

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 38/179 (21%)

Query: 2   EQYTANSNSSTEQIVVQAGQI----QQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQ 57
           +Q    + SST  I  Q GQI     QQ Q  P+ +QV  GQ +       +VQA P GQ
Sbjct: 160 QQQGQQTTSSTTTI--QPGQIIIAQPQQGQTTPVTMQVGEGQQVQ------IVQAQPQGQ 211

Query: 58  GQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQP--------- 108
            Q          Q +QQI +   G+IQ      + VQ   GQ Q I + QP         
Sbjct: 212 AQQAQSGTGQTMQVMQQI-ITNTGEIQ-----QIPVQLNAGQLQYIRLAQPVSGTQVVQG 265

Query: 109 --QTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIP 165
             QT  T  Q  TQ ++    QQ +Q  +GQ + YQ        +QQVT+P    +  P
Sbjct: 266 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQQL-YQ--------IQQVTMPAGQDLAQP 315



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 25/146 (17%)

Query: 60  TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ------------QIIIQ 106
           T+ Q P +   QG QQ Q        IQ GQ +  Q QQGQT             QI+  
Sbjct: 147 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 206

Query: 107 QPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPA 166
           QPQ      Q+ T Q + V  Q +  T E Q I   PV  +   LQ + +         A
Sbjct: 207 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI---PVQLNAGQLQYIRL---------A 254

Query: 167 ASLAGAQIVQTGANTNTTSSGQGTVT 192
             ++G Q+VQ    T  T++ Q T T
Sbjct: 255 QPVSGTQVVQGQIQTLATNAQQITQT 280



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 35/186 (18%)

Query: 25  QVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQI- 83
           QVQGQ    Q +        GQ I+ Q   G      MQ  V   Q +Q +Q  P GQ  
Sbjct: 156 QVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQ--VGEGQQVQIVQAQPQGQAQ 213

Query: 84  QIQGG------------------QAVQVQGQQGQTQQIIIQQP--QTAVTAGQTQTQQQI 123
           Q Q G                  Q + VQ   GQ Q I + QP   T V  GQ QT   +
Sbjct: 214 QAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQT---L 270

Query: 124 AVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAA-SLAGAQIVQTGANTN 182
           A   QQ+ QT   Q         DG  L Q+       +T+PA   LA    +Q   + N
Sbjct: 271 ATNAQQITQTEVQQGQQQFSQFTDGQQLYQIQ-----QVTMPAGQDLAQPMFIQ---SAN 322

Query: 183 TTSSGQ 188
             S GQ
Sbjct: 323 QPSDGQ 328


>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
           sapiens]
          Length = 354

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 53/158 (33%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 2   EQYTANSNSSTEQIVVQAGQI----QQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQ 57
           +Q    + SST  I  Q GQI     QQ Q  P+ +QV  GQ +       +VQA P GQ
Sbjct: 160 QQQGQQTTSSTTTI--QPGQIIIAQPQQGQTTPVTMQVGEGQQVQ------IVQAQPQGQ 211

Query: 58  GQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQ--TAVTAG 115
            Q          Q +QQI +   G+IQ      + VQ   GQ Q I + QP   T V  G
Sbjct: 212 AQQAQSGTGQTMQVMQQI-ITNTGEIQ-----QIPVQLNAGQLQYIRLAQPVSGTQVVQG 265

Query: 116 QTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQ 153
           Q QT    A QGQ+ A   + +  + + +    T +QQ
Sbjct: 266 QIQTLATNAQQGQRNASQGKPRRCLKETLQITQTEVQQ 303



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 25/143 (17%)

Query: 60  TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ------------QIIIQ 106
           T+ Q P +   QG QQ Q        IQ GQ +  Q QQGQT             QI+  
Sbjct: 147 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 206

Query: 107 QPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPA 166
           QPQ      Q+ T Q + V  Q +  T E Q I   PV  +   LQ + +         A
Sbjct: 207 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI---PVQLNAGQLQYIRL---------A 254

Query: 167 ASLAGAQIVQTGANTNTTSSGQG 189
             ++G Q+VQ    T  T++ QG
Sbjct: 255 QPVSGTQVVQGQIQTLATNAQQG 277


>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
           sapiens]
          Length = 334

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 34/194 (17%)

Query: 60  TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ------------QIIIQ 106
           T+ Q P +   QG QQ Q        IQ GQ +  Q QQGQT             QI+  
Sbjct: 147 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQA 206

Query: 107 QPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPA 166
           QPQ      Q+ T Q + V  Q +  T E Q I   PV  +   LQ + +         A
Sbjct: 207 QPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQI---PVQLNAGQLQYIRL---------A 254

Query: 167 ASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLP 226
             ++G Q+VQ    T  T++ Q T T         V  G         G +  IQ++ +P
Sbjct: 255 QPVSGTQVVQGQIQTLATNAQQITQT--------EVQQGQQQFSQFTDGQLYQIQQVTMP 306

Query: 227 GAEMLEEEPLYVNA 240
             + L  +P+++ +
Sbjct: 307 AGQDL-AQPMFIQS 319



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 52/164 (31%), Positives = 65/164 (39%), Gaps = 28/164 (17%)

Query: 25  QVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQI- 83
           QVQGQ    Q +        GQ I+ Q   G      MQ  V   Q +Q +Q  P GQ  
Sbjct: 156 QVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQ--VGEGQQVQIVQAQPQGQAQ 213

Query: 84  QIQGG------------------QAVQVQGQQGQTQQIIIQQP--QTAVTAGQTQTQQQI 123
           Q Q G                  Q + VQ   GQ Q I + QP   T V  GQ QT   +
Sbjct: 214 QAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQT---L 270

Query: 124 AVQGQQVAQT--AEGQTIVYQPVNADGTILQQVTVPVSGMITIP 165
           A   QQ+ QT   +GQ    Q  +     +QQVT+P    +  P
Sbjct: 271 ATNAQQITQTEVQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQP 314


>gi|221139761 zinc finger protein 853 [Homo sapiens]
          Length = 659

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 27/146 (18%)

Query: 2   EQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTI 61
           ++      +  +Q++ Q  Q+QQQVQ Q L+ Q                      Q + +
Sbjct: 174 QEQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQ----------------------QQEQL 211

Query: 62  MQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQT-----AVTAGQ 116
            Q  +   Q   Q Q     Q Q+Q  Q + +  QQGQ QQ ++QQ Q       +   Q
Sbjct: 212 QQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQLLEQQQ 271

Query: 117 TQTQQQIAVQGQQVAQTAEGQTIVYQ 142
            Q QQQ+ +Q Q+  Q  + Q ++ Q
Sbjct: 272 AQLQQQLLLQQQEQLQQQQQQQLLQQ 297



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 73/305 (23%), Positives = 113/305 (37%), Gaps = 52/305 (17%)

Query: 15  IVVQAGQIQQQV--QGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGL 72
           ++ Q GQ+QQQ+  Q Q  + Q    Q      Q +++Q     Q Q   Q+     + L
Sbjct: 243 LLQQQGQLQQQLLQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQL 302

Query: 73  QQIQLVPPG--------------QIQIQGGQAVQVQGQQGQTQQIIIQQP-----QTAVT 113
           QQ QL PP                + +   Q ++ Q Q+ + QQ + +Q      Q  + 
Sbjct: 303 QQQQLQPPPLEPEEEEEVELELMPVDLGSEQELEQQRQELERQQELERQQEQRQLQLKLQ 362

Query: 114 AGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMI---TIPAASLA 170
               Q +QQ+  Q QQ+ Q      +    + A    +Q    PV   +    +PAA   
Sbjct: 363 EELQQLEQQLEQQQQQLEQQEVQLELTPVELGAQQQEVQLELTPVQPELQLELVPAAGGG 422

Query: 171 GAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEM 230
           GA +            G     V  P    VV      +MV  A + PA+  IP P    
Sbjct: 423 GAAV-----------PGAPAAVVVAPPGYVVVQE----LMVLPAVAAPAVVAIPGPAGSA 467

Query: 231 LEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRK----YLHESRHRHAMARKRGEG 286
                    A    R  +RR+AR +    G+  K   +      H++ H      + GE 
Sbjct: 468 ---------ALTPARQRRRRRARDRPTICGECGKGFSRSTDLVRHQATHTGERPHRCGEC 518

Query: 287 GRFFS 291
           G+ FS
Sbjct: 519 GKGFS 523



 Score = 35.4 bits (80), Expect = 0.067
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 70  QGLQQIQLVPPGQIQIQGG---QAVQVQGQQGQTQQIIIQQP--QTAVTAGQTQTQQQIA 124
           Q + Q Q + P Q+Q Q     Q  Q+Q QQ Q QQ++ QQ   Q  V   Q   QQQ  
Sbjct: 151 QLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQQQEQ 210

Query: 125 VQGQQVAQTAE 135
           +Q QQ+ Q  E
Sbjct: 211 LQQQQLLQQQE 221



 Score = 31.6 bits (70), Expect = 0.97
 Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 21  QIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPP 80
           Q Q Q  GQ  + Q+   +  +   Q +  +     Q Q +    V   Q LQQ Q    
Sbjct: 119 QQQPQQDGQQQLSQLQQEKHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQ---- 174

Query: 81  GQIQIQGGQAVQVQGQQGQTQ------QIIIQQ----PQTAVTAGQTQTQQQIAVQGQQV 130
            Q+Q Q  Q  QV  QQ Q Q      Q++ QQ     Q  +   Q Q QQQ   Q Q+ 
Sbjct: 175 EQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQ 234

Query: 131 AQTAEGQTIVYQPVNADGTILQQ 153
            Q  +   ++ Q       +LQQ
Sbjct: 235 LQQQQQLLLLQQQGQLQQQLLQQ 257



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 16/147 (10%)

Query: 11  STEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQ 70
           +TE  V++   +Q    G P    +SGG    S G     +  P  +  +  +  VS   
Sbjct: 21  ATETFVLE---LQCLEDGGPGPDTLSGG----SGGSESQEEEEPQERNSSPQRPAVSAPV 73

Query: 71  GLQQI-QLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQ 129
           G  +I +   PGQ ++Q  Q  Q    Q Q Q   +QQPQ        + QQQ    GQQ
Sbjct: 74  GASEIAEETRPGQRELQLQQLEQQPEPQQQPQHEQLQQPQP-----HLELQQQPQQDGQQ 128

Query: 130 ---VAQTAEGQTIVYQPVNADGTILQQ 153
                Q  + Q++ +Q +  +  ++ Q
Sbjct: 129 QLSQLQQEKHQSVHHQELKPELQLMHQ 155



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 34/136 (25%), Positives = 52/136 (38%)

Query: 18  QAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQL 77
           Q  Q+QQ+        ++     +    Q +  Q V   Q     Q  +   Q  +Q  L
Sbjct: 129 QLSQLQQEKHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVL 188

Query: 78  VPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQ 137
               Q+Q Q  +   +Q QQ Q QQ  + Q Q  +   Q Q QQ+   Q QQ+    +  
Sbjct: 189 QQQEQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQG 248

Query: 138 TIVYQPVNADGTILQQ 153
            +  Q +      LQQ
Sbjct: 249 QLQQQLLQQQQAQLQQ 264



 Score = 29.6 bits (65), Expect = 3.7
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 13  EQIVVQAGQIQQQV--QGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQ 70
           +Q++ Q  Q+QQQ   Q Q  + Q     L+   GQ +  Q +   Q Q   Q+      
Sbjct: 214 QQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQ-LQQQLLQQQQAQLQQQLLEQQQA 272

Query: 71  GLQQIQLVPPGQIQIQGGQAVQV-QGQQGQTQQIIIQQP 108
            LQQ QL+   Q Q+Q  Q  Q+ Q QQ Q QQ  +Q P
Sbjct: 273 QLQQ-QLLLQQQEQLQQQQQQQLLQQQQEQLQQQQLQPP 310


>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
          Length = 1200

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 38  GQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQ 97
           G L     QP+    V GGQ     Q+     Q +QQ Q  PP Q Q  G Q + +Q  Q
Sbjct: 230 GHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQQAGQQRISMQEIQ 289

Query: 98  GQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQ 129
            Q QQI   QPQ      Q Q  QQ+ +Q +Q
Sbjct: 290 TQPQQIRPSQPQ---PPPQQQQPQQLQLQQRQ 318


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 19/182 (10%)

Query: 15   IVVQAGQIQQQVQGQPLMVQVSGGQ--LITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGL 72
            +  Q  Q QQQ Q Q  M  +S  Q  L++ +GQP +     G   Q   Q  +   Q L
Sbjct: 3853 VTAQQQQQQQQHQQQGSMAGLSHLQQSLMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQL 3912

Query: 73   QQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQ 132
            QQ Q     Q Q    Q +Q Q QQ Q Q    QQ Q  +   Q Q QQQ   Q QQ  Q
Sbjct: 3913 QQQQQQQLQQQQQLQQQQLQQQQQQQQLQ----QQQQQQLQQQQQQLQQQQQQQQQQFQQ 3968

Query: 133  TAEGQTIVYQPVNADGTIL-------QQVT----VPVSGMITIPAASLAGAQIVQTGANT 181
              + Q +    +N   T+L       QQV     +P   +    +    G  ++ TG   
Sbjct: 3969 QQQQQQMGL--LNQSRTLLSPQQQQQQQVALGPGMPAKPLQHFSSPGALGPTLLLTGKEQ 4026

Query: 182  NT 183
            NT
Sbjct: 4027 NT 4028



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 13   EQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGL 72
            + ++  +GQ +   Q    + Q+   Q +    Q    Q     Q Q + Q  +   Q  
Sbjct: 3878 QSLMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQ 3937

Query: 73   QQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQ 132
            QQ+Q     Q+Q Q  Q  Q Q QQ Q  Q   QQ Q  +     Q++  ++ Q QQ  Q
Sbjct: 3938 QQLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQQQQQQMGLL---NQSRTLLSPQQQQQQQ 3994

Query: 133  TAEGQTIVYQPV 144
             A G  +  +P+
Sbjct: 3995 VALGPGMPAKPL 4006


>gi|125625357 Sp2 transcription factor [Homo sapiens]
          Length = 613

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 52/180 (28%)

Query: 25  QVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQ 84
           Q+QG  L     GGQL+ +   P M+                 GT+    IQ     QIQ
Sbjct: 95  QIQGSQLSASYPGGQLVFAIQNPTMIN---------------KGTRSNANIQYQAVPQIQ 139

Query: 85  IQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPV 144
               Q +QVQ       QII    Q  +T   +                       ++PV
Sbjct: 140 ASNSQTIQVQPNLTNQIQIIPGTNQAIITPSPSS----------------------HKPV 177

Query: 145 NADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNS 204
                 +Q+     S   T P         VQ+GAN    + G G VT+TLPV  N+VN+
Sbjct: 178 PIKPAPIQK-----SSTTTTP---------VQSGANVVKLTGGGGNVTLTLPV-NNLVNA 222



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 2/136 (1%)

Query: 63  QVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQ 122
           Q PV+  + ++ + +       IQ G  + +    G  Q  ++QQ Q      + Q   Q
Sbjct: 256 QPPVAVAEQVETVLIETTADNIIQAGNNLLIVQSPGGGQPAVVQQVQVVPPKAEQQQVVQ 315

Query: 123 IAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTN 182
           I  Q  +V Q A   T+   P         Q   P    + I   S    Q V    +  
Sbjct: 316 IPQQALRVVQAASA-TLPTVPQKPSQNFQIQAAEPTPTQVYIRTPS-GEVQTVLVQDSPP 373

Query: 183 TTSSGQGTVTVTLPVA 198
            T++     T + P +
Sbjct: 374 ATAAATSNTTCSSPAS 389



 Score = 28.5 bits (62), Expect = 8.2
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 21/78 (26%)

Query: 25  QVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQ 84
           QVQG P+ +  +GGQ      Q + VQ V G        + +SG         + P QIQ
Sbjct: 445 QVQGVPVTITNTGGQ------QQLTVQNVSGN------NLTISG---------LSPTQIQ 483

Query: 85  IQGGQAVQVQGQQGQTQQ 102
           +Q  QA+  + Q G+ ++
Sbjct: 484 LQMEQALAGETQPGEKRR 501


>gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]
          Length = 337

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 13  EQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQG- 71
           +QI+  +GQ+ Q V+        +G Q I    Q +++Q       Q I Q+   G Q  
Sbjct: 114 QQILTNSGQLLQVVRA------ANGAQYIFQPQQSVVLQQ------QVIPQMQPGGVQAP 161

Query: 72  -LQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAV----TAGQTQTQQQIAVQ 126
            +QQ+    PG I  Q G  +Q        QQI+    +T V     A  T  Q QI   
Sbjct: 162 VIQQVLAPLPGGISPQTGVIIQ-------PQQILFTGNKTQVIPTTVAAPTPAQAQITAT 214

Query: 127 GQQVAQTAEGQTIVYQPVNADGT 149
           GQQ  Q    QT     +  DGT
Sbjct: 215 GQQQPQAQPAQTQAPLVLQVDGT 237



 Score = 35.8 bits (81), Expect = 0.052
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 18/137 (13%)

Query: 89  QAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADG 148
           Q+  V G   + QQ+++Q  Q      Q Q QQQ         Q    QT+  Q      
Sbjct: 13  QSRAVDGFHSEEQQLLLQVQQ------QHQPQQQQHHHHHHHQQAQPQQTVPQQAQT--- 63

Query: 149 TILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTL-----PVAGNVVN 203
              QQV +P S   T P   +  ++++Q   N +  S+     T+ L     PV   + N
Sbjct: 64  ---QQVLIPASQQATAPQVIVPDSKLIQ-HMNASNMSAAATAATLALPAGVTPVQQILTN 119

Query: 204 SGGMVMMVPGAGSVPAI 220
           SG ++ +V  A     I
Sbjct: 120 SGQLLQVVRAANGAQYI 136


>gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]
          Length = 376

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 13  EQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQG- 71
           +QI+  +GQ+ Q V+        +G Q I    Q +++Q       Q I Q+   G Q  
Sbjct: 153 QQILTNSGQLLQVVRA------ANGAQYIFQPQQSVVLQQ------QVIPQMQPGGVQAP 200

Query: 72  -LQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAV----TAGQTQTQQQIAVQ 126
            +QQ+    PG I  Q G  +Q        QQI+    +T V     A  T  Q QI   
Sbjct: 201 VIQQVLAPLPGGISPQTGVIIQ-------PQQILFTGNKTQVIPTTVAAPTPAQAQITAT 253

Query: 127 GQQVAQTAEGQTIVYQPVNADGT 149
           GQQ  Q    QT     +  DGT
Sbjct: 254 GQQQPQAQPAQTQAPLVLQVDGT 276



 Score = 35.8 bits (81), Expect = 0.052
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 18/137 (13%)

Query: 89  QAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADG 148
           Q+  V G   + QQ+++Q  Q      Q Q QQQ         Q    QT+  Q      
Sbjct: 52  QSRAVDGFHSEEQQLLLQVQQ------QHQPQQQQHHHHHHHQQAQPQQTVPQQAQT--- 102

Query: 149 TILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTL-----PVAGNVVN 203
              QQV +P S   T P   +  ++++Q   N +  S+     T+ L     PV   + N
Sbjct: 103 ---QQVLIPASQQATAPQVIVPDSKLIQ-HMNASNMSAAATAATLALPAGVTPVQQILTN 158

Query: 204 SGGMVMMVPGAGSVPAI 220
           SG ++ +V  A     I
Sbjct: 159 SGQLLQVVRAANGAQYI 175


>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
           sapiens]
          Length = 1077

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 68  GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQG 127
           G + +QQ +L P    Q Q     Q Q Q     Q   Q    A    Q Q Q Q   Q 
Sbjct: 164 GVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA 223

Query: 128 QQVAQT-AEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSS 186
           Q  AQ  A+ Q            +  QV     G  T   +S A A  V T  +++T SS
Sbjct: 224 QAQAQAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPA--VSTSTSSSTPSS 281

Query: 187 GQGTVTVTLPVAGNV 201
              T T    VA  V
Sbjct: 282 TTSTTTTATSVAQTV 296


>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
           sapiens]
          Length = 1098

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 68  GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQG 127
           G + +QQ +L P    Q Q     Q Q Q     Q   Q    A    Q Q Q Q   Q 
Sbjct: 164 GVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA 223

Query: 128 QQVAQT-AEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSS 186
           Q  AQ  A+ Q            +  QV     G  T   +S A A  V T  +++T SS
Sbjct: 224 QAQAQAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPA--VSTSTSSSTPSS 281

Query: 187 GQGTVTVTLPVAGNV 201
              T T    VA  V
Sbjct: 282 TTSTTTTATSVAQTV 296


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
            [Homo sapiens]
          Length = 2920

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 16/171 (9%)

Query: 5    TANSNSSTEQIVVQAGQIQQQVQGQP-LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQ 63
            TA  ++  +         Q +VQ QP +  Q +    + S  QP   Q+    + Q   Q
Sbjct: 2272 TAQPSAQPQPQTQPQSPAQPEVQTQPEVQTQTTVSSHVPSEAQPTHAQS---SKPQVAAQ 2328

Query: 64   V-PVSGTQGLQQIQLVPPGQIQIQGGQAVQVQ-GQQGQTQQIIIQ----QPQTAV---TA 114
              P S  QG   +++  P Q +I+     Q+  GQQ Q Q    Q    QP T++   + 
Sbjct: 2329 SQPQSNVQGQSPVRVQSPSQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHTSLQIPSQ 2388

Query: 115  GQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIP 165
            GQ Q+Q Q+    Q +   + GQT+    V++      Q+  P   +I +P
Sbjct: 2389 GQPQSQPQVQSSTQTL---SSGQTLNQVTVSSPSRPQLQIQQPQPQVIAVP 2436



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 48/143 (33%), Positives = 54/143 (37%), Gaps = 31/143 (21%)

Query: 23   QQQVQ---GQPLMVQVSGGQLITSTGQPIMVQAVPGG-----QGQTIMQVPVSGTQGLQ- 73
            Q QVQ    QP+ +Q      I S GQP     V         GQT+ QV VS     Q 
Sbjct: 2364 QSQVQTTTSQPIPIQPHTSLQIPSQGQPQSQPQVQSSTQTLSSGQTLNQVTVSSPSRPQL 2423

Query: 74   QIQLVPPGQI-------------QIQGGQAVQVQGQQ-GQTQQIIIQQPQTAVTAGQTQT 119
            QIQ   P  I             QIQ     Q+Q QQ G  QQI +Q P         Q 
Sbjct: 2424 QIQQPQPQVIAVPQLQQQVQVLSQIQSQVVAQIQAQQSGVPQQIKLQLP--------IQI 2475

Query: 120  QQQIAVQGQQVAQTAEGQTIVYQ 142
            QQ  AVQ  Q+      Q    Q
Sbjct: 2476 QQSSAVQTHQIQNVVTVQAASVQ 2498



 Score = 36.6 bits (83), Expect = 0.030
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 5    TANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQV 64
            T +S  +  Q+ V +    Q      L +Q    Q+I        VQ +   Q Q + Q+
Sbjct: 2403 TLSSGQTLNQVTVSSPSRPQ------LQIQQPQPQVIAVPQLQQQVQVLSQIQSQVVAQI 2456

Query: 65   PVSGTQGLQQIQLVPPGQIQ----IQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ 120
                +   QQI+L  P QIQ    +Q  Q   V   Q  + Q  +Q+ Q      Q + Q
Sbjct: 2457 QAQQSGVPQQIKLQLPIQIQQSSAVQTHQIQNVVTVQAASVQEQLQRVQQLRDQQQKKKQ 2516

Query: 121  QQIAVQGQQVAQTAEGQTIVYQPV 144
            QQI ++ +   Q +    I+ + V
Sbjct: 2517 QQIEIKREHTLQASNQSEIIQKQV 2540



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 3    QYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIM 62
            Q +  S +ST  I   A Q  +  QGQ  +      QL    G    +  V  GQGQT  
Sbjct: 2118 QKSLTSATSTSNIQSSASQPPRPQQGQVKLTMAQLTQLTQGHGGNQGLTVVIQGQGQT-- 2175

Query: 63   QVPVSGTQGLQQIQLVPPGQIQI--QGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQT 119
                       Q+QL+P G   +   G Q +Q     G  Q+ +     T  T   T T
Sbjct: 2176 ---------TGQLQLIPQGVTVLPGPGQQLMQAAMPNGTVQRFLFTPLATTATTASTTT 2225



 Score = 31.6 bits (70), Expect = 0.97
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 29/186 (15%)

Query: 21   QIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVS------------- 67
            Q Q Q  GQ L +   G  ++   GQ +M  A+P G  Q  +  P++             
Sbjct: 2170 QGQGQTTGQ-LQLIPQGVTVLPGPGQQLMQAAMPNGTVQRFLFTPLATTATTASTTTTTV 2228

Query: 68   -----GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQ 122
                 GT   +Q +L P    Q+Q  Q   +   Q  +      QPQTA  + Q Q Q Q
Sbjct: 2229 STTAAGTGEQRQSKLSP----QMQVHQDKTLPPAQSSSVGPAEAQPQTAQPSAQPQPQTQ 2284

Query: 123  IAVQGQQVAQT---AEGQTIV--YQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQT 177
                 Q   QT    + QT V  + P  A  T  Q     V+   + P +++ G   V+ 
Sbjct: 2285 PQSPAQPEVQTQPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQ-SQPQSNVQGQSPVRV 2343

Query: 178  GANTNT 183
             + + T
Sbjct: 2344 QSPSQT 2349



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 13   EQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGL 72
            +Q V    QIQ QV  Q +  Q SG         PI +Q     Q   I  V       +
Sbjct: 2439 QQQVQVLSQIQSQVVAQ-IQAQQSGVPQQIKLQLPIQIQQSSAVQTHQIQNVVTVQAASV 2497

Query: 73   QQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQ-TQQQIAVQGQQVA 131
            Q+         Q+Q  Q ++ Q Q+ + QQI I++  T   + Q++  Q+Q+ ++   V 
Sbjct: 2498 QE---------QLQRVQQLRDQQQKKKQQQIEIKREHTLQASNQSEIIQKQVVMKHNAVI 2548

Query: 132  Q 132
            +
Sbjct: 2549 E 2549


>gi|38372901 Sp1 transcription factor isoform a [Homo sapiens]
          Length = 785

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 52/217 (23%), Positives = 78/217 (35%), Gaps = 38/217 (17%)

Query: 61  IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQV-------------------QGQQGQTQ 101
           IM    SG+ G       P     +QG  A+ +                   Q QQ Q Q
Sbjct: 338 IMNFTTSGSSGTNSQGQTPQRVSGLQGSDALNIQQNQTSGGSLQAGQQKEGEQNQQTQQQ 397

Query: 102 QIIIQQP-----------QTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 150
           QI+IQ             Q A  +GQT T Q I+   Q+  Q  + Q +     N+   I
Sbjct: 398 QILIQPQLVQGGQALQALQAAPLSGQTFTTQAIS---QETLQNLQLQAV----PNSGPII 450

Query: 151 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 210
           ++  TV  +G ++     L   Q+    A T T +  QG        +   +        
Sbjct: 451 IRTPTVGPNGQVSWQTLQLQNLQVQNPQAQTITLAPMQGVSLGQTSSSNTTLTPIASAAS 510

Query: 211 VP-GAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRI 246
           +P G  +V A Q   +PG + +    L  +  Q H I
Sbjct: 511 IPAGTVTVNAAQLSSMPGLQTINLSALGTSGIQVHPI 547



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 35/205 (17%)

Query: 35  VSGGQLITSTGQPIMVQAV--------PGGQGQTIMQVPVSGTQGLQ------QIQLVPP 80
           VSGGQ + +    +  Q V        P  Q Q I Q      Q LQ      Q+Q    
Sbjct: 142 VSGGQYVVAAAPNLQNQQVLTGLPGVMPNIQYQVIPQFQTVDGQQLQFAATGAQVQQDGS 201

Query: 81  GQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQT----AEG 136
           GQIQI  G   Q+   +G    II   P     A   Q      + GQ    T    A  
Sbjct: 202 GQIQIIPGANQQIITNRGSGGNIIAAMPNLLQQAVPLQGLANNVLSGQTQYVTNVPVALN 261

Query: 137 QTIVYQPVNADGTIL-----QQVTV-----------PVSGMITIPAASLAGAQIVQTGAN 180
             I   PVN+          Q VT+           PV+   TI +ASL  +Q   +   
Sbjct: 262 GNITLLPVNSVSAATLTPSSQAVTISSSGSQESGSQPVTSGTTISSASLVSSQASSSSFF 321

Query: 181 TNTTSSGQGTVTVTLPVAGNVVNSG 205
           TN  S    T T  + +  N   SG
Sbjct: 322 TNANSYSTTTTTSNMGIM-NFTTSG 345


>gi|218751903 Sp1 transcription factor isoform b [Homo sapiens]
          Length = 778

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 52/217 (23%), Positives = 78/217 (35%), Gaps = 38/217 (17%)

Query: 61  IMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQV-------------------QGQQGQTQ 101
           IM    SG+ G       P     +QG  A+ +                   Q QQ Q Q
Sbjct: 331 IMNFTTSGSSGTNSQGQTPQRVSGLQGSDALNIQQNQTSGGSLQAGQQKEGEQNQQTQQQ 390

Query: 102 QIIIQQP-----------QTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 150
           QI+IQ             Q A  +GQT T Q I+   Q+  Q  + Q +     N+   I
Sbjct: 391 QILIQPQLVQGGQALQALQAAPLSGQTFTTQAIS---QETLQNLQLQAV----PNSGPII 443

Query: 151 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 210
           ++  TV  +G ++     L   Q+    A T T +  QG        +   +        
Sbjct: 444 IRTPTVGPNGQVSWQTLQLQNLQVQNPQAQTITLAPMQGVSLGQTSSSNTTLTPIASAAS 503

Query: 211 VP-GAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRI 246
           +P G  +V A Q   +PG + +    L  +  Q H I
Sbjct: 504 IPAGTVTVNAAQLSSMPGLQTINLSALGTSGIQVHPI 540



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 35/205 (17%)

Query: 35  VSGGQLITSTGQPIMVQAV--------PGGQGQTIMQVPVSGTQGLQ------QIQLVPP 80
           VSGGQ + +    +  Q V        P  Q Q I Q      Q LQ      Q+Q    
Sbjct: 135 VSGGQYVVAAAPNLQNQQVLTGLPGVMPNIQYQVIPQFQTVDGQQLQFAATGAQVQQDGS 194

Query: 81  GQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQT----AEG 136
           GQIQI  G   Q+   +G    II   P     A   Q      + GQ    T    A  
Sbjct: 195 GQIQIIPGANQQIITNRGSGGNIIAAMPNLLQQAVPLQGLANNVLSGQTQYVTNVPVALN 254

Query: 137 QTIVYQPVNADGTIL-----QQVTV-----------PVSGMITIPAASLAGAQIVQTGAN 180
             I   PVN+          Q VT+           PV+   TI +ASL  +Q   +   
Sbjct: 255 GNITLLPVNSVSAATLTPSSQAVTISSSGSQESGSQPVTSGTTISSASLVSSQASSSSFF 314

Query: 181 TNTTSSGQGTVTVTLPVAGNVVNSG 205
           TN  S    T T  + +  N   SG
Sbjct: 315 TNANSYSTTTTTSNMGIM-NFTTSG 338


>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
           sapiens]
          Length = 301

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 49/156 (31%), Positives = 62/156 (39%), Gaps = 35/156 (22%)

Query: 60  TIMQVPVS-GTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQII---------IQQPQ 109
           T+ Q P +   QG QQ Q        IQ GQ +  Q QQGQT Q++         IQQ  
Sbjct: 147 TLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTMQVMQQIITNTGEIQQIP 206

Query: 110 TAVTAGQTQ----------TQ------QQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQ 153
             + AGQ Q          TQ      Q +A   QQ+ QT   Q         DG  L Q
Sbjct: 207 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ 266

Query: 154 VTVPVSGMITIPAA-SLAGAQIVQTGANTNTTSSGQ 188
           +       +T+PA   LA    +Q   + N  S GQ
Sbjct: 267 IQ-----QVTMPAGQDLAQPMFIQ---SANQPSDGQ 294


>gi|27477113 sterol regulatory element-binding transcription factor
           2 [Homo sapiens]
          Length = 1141

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 59/232 (25%), Positives = 84/232 (36%), Gaps = 32/232 (13%)

Query: 21  QIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPP 80
           Q Q Q+Q Q +M+  +     T+    I+ Q +      T  QV     Q L     V P
Sbjct: 140 QPQTQLQQQTVMITPT---FSTTPQTRIIQQPLIYQNAATSFQVLQPQVQSLVTSSQVQP 196

Query: 81  GQIQIQGGQAVQVQGQQGQTQQIIIQQ--PQTAVTAGQTQTQQQIAVQGQQVAQTAEGQT 138
             IQ Q  Q VQ Q    QT    +Q   P T  T    Q QQ   +   Q+ +T    +
Sbjct: 197 VTIQ-QQVQTVQAQRVLTQTANGTLQTLAPATVQTVAAPQVQQVPVLVQPQIIKT---DS 252

Query: 139 IVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVA 198
           +V   +  DG+       PV   +  PA +     I        T     GT+  T+PV 
Sbjct: 253 LVLTTLKTDGS-------PVMAAVQNPALTALTTPIQTAALQVPTLVGSSGTILTTMPV- 304

Query: 199 GNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRR 250
                       + G   VP  Q   +PG     E P     +  H I+++R
Sbjct: 305 ------------MMGQEKVPIKQ---VPGGVKQLEPPKEGERRTTHNIIEKR 341


>gi|122937388 MAX gene associated [Homo sapiens]
          Length = 3114

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 12   TEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMV--QAVPGGQGQTIMQVPVSGT 69
            T+ ++ + G +QQ++ G      ++G Q  +    P+MV    V     Q    V  + T
Sbjct: 1588 TQFVMSKVGALQQKIPGVSTPQTLAGTQKFSIRPSPVMVVTPVVSSEPVQVCSPVTAAVT 1647

Query: 70   QGLQQIQL-----VPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIA 124
                Q+ L     V P    I   +  +     G T   +++  +T  +   T TQ    
Sbjct: 1648 TTTPQVFLENTTAVTP-MTAISDVETKETTYSSGATTTGVVEVSETNTSTSVTSTQSTAT 1706

Query: 125  VQGQQ-------VAQTAEGQTIVYQP-------VNADGTILQQVTVPVSG-MITIPAASL 169
            V   +       VA  A  +++V  P        +   T L  VT   S  M+T P +SL
Sbjct: 1707 VNLTKTTGITTPVASVAFPKSLVASPSTITLPVASTASTSLVVVTAAASSSMVTTPTSSL 1766

Query: 170  AGAQIVQTGANTNTTSSGQGTVTVTLPVA------GNVVNSGGMVMMVP---GAGSVPAI 220
                I+ +G N +   S +      +PVA        V  +G  ++++P   G+ ++  +
Sbjct: 1767 GSVPIILSGINGSPPVSQRPENAAQIPVATPQVSPNTVKRAGPRLLLIPVQQGSPTLRPV 1826

Query: 221  QRIPLPGAEML 231
                L G  M+
Sbjct: 1827 SNTQLQGHRMV 1837


>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
          Length = 715

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 12/207 (5%)

Query: 16  VVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQI 75
           V+   Q+QQ +Q Q L  Q    Q +    Q +M+Q     +     Q  +      QQ 
Sbjct: 98  VITPQQMQQILQQQVLSPQQL--QALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQ 155

Query: 76  QLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAE 135
           Q     Q Q Q  Q  Q Q QQ Q QQ   QQ Q      Q + QQQ   Q QQ+A    
Sbjct: 156 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLA---- 211

Query: 136 GQTIVYQPVNADGTILQQ----VTVPVSGMITIP--AASLAGAQIVQTGANTNTTSSGQG 189
            Q +V+Q        LQQ    +++   G+I+IP   A+L    + Q G +         
Sbjct: 212 AQQLVFQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQAALPVQSLPQAGLSPAEIQQLWK 271

Query: 190 TVTVTLPVAGNVVNSGGMVMMVPGAGS 216
            VT    +  N +  GG+ +    + S
Sbjct: 272 EVTGVHSMEDNGIKHGGLDLTTNNSSS 298


>gi|22538413 forkhead box P2 isoform III [Homo sapiens]
          Length = 623

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 12/207 (5%)

Query: 16  VVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQI 75
           V+   Q+QQ +Q Q L  Q    Q +    Q +M+Q     +     Q  +      QQ 
Sbjct: 6   VITPQQMQQILQQQVLSPQQL--QALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQ 63

Query: 76  QLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAE 135
           Q     Q Q Q  Q  Q Q QQ Q QQ   QQ Q      Q + QQQ   Q QQ+A    
Sbjct: 64  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLA---- 119

Query: 136 GQTIVYQPVNADGTILQQ----VTVPVSGMITIP--AASLAGAQIVQTGANTNTTSSGQG 189
            Q +V+Q        LQQ    +++   G+I+IP   A+L    + Q G +         
Sbjct: 120 AQQLVFQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQAALPVQSLPQAGLSPAEIQQLWK 179

Query: 190 TVTVTLPVAGNVVNSGGMVMMVPGAGS 216
            VT    +  N +  GG+ +    + S
Sbjct: 180 EVTGVHSMEDNGIKHGGLDLTTNNSSS 206


>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 12/207 (5%)

Query: 16  VVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQI 75
           V+   Q+QQ +Q Q L  Q    Q +    Q +M+Q     +     Q  +      QQ 
Sbjct: 123 VITPQQMQQILQQQVLSPQQL--QALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQ 180

Query: 76  QLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAE 135
           Q     Q Q Q  Q  Q Q QQ Q QQ   QQ Q      Q + QQQ   Q QQ+A    
Sbjct: 181 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLA---- 236

Query: 136 GQTIVYQPVNADGTILQQ----VTVPVSGMITIP--AASLAGAQIVQTGANTNTTSSGQG 189
            Q +V+Q        LQQ    +++   G+I+IP   A+L    + Q G +         
Sbjct: 237 AQQLVFQQQLLQMQQLQQQQHLLSLQRQGLISIPPGQAALPVQSLPQAGLSPAEIQQLWK 296

Query: 190 TVTVTLPVAGNVVNSGGMVMMVPGAGS 216
            VT    +  N +  GG+ +    + S
Sbjct: 297 EVTGVHSMEDNGIKHGGLDLTTNNSSS 323


>gi|19923559 EMSY protein [Homo sapiens]
          Length = 1322

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 22/221 (9%)

Query: 12  TEQIVVQAGQ--IQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGT 69
           T QI  ++G   I QQVQ   ++ +     L TS+  PIMV +  G    T +    +GT
Sbjct: 447 TIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGT 506

Query: 70  QGLQQIQLVPP--GQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQI---- 123
           Q       V P  G++    G A  V+   G    II   P++  T G       I    
Sbjct: 507 QATYTRPTVSPSIGRMAATPGAATYVKTTSG---SIITVVPKSLATLGGKIISSNIVSGT 563

Query: 124 AVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTNT 183
             +   +  T++   IV Q     GT +Q   +P   ++T    +  G + +Q    T  
Sbjct: 564 TTKITTIPMTSKPNVIVVQKTTGKGTTIQ--GLPGKNVVT-TLLNAGGEKTIQ----TVP 616

Query: 184 TSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIP 224
           T +    +T T P+   +V     +    G+   PA + IP
Sbjct: 617 TGAKPAILTATRPITKMIVTQPKGI----GSTVQPAAKIIP 653



 Score = 33.1 bits (74), Expect = 0.33
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 23/129 (17%)

Query: 22  IQQQVQGQPLMVQVSGGQLITST----GQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQL 77
           + Q+  G+   +Q   G+ + +T    G    +Q VP G    I+    + T+ + ++ +
Sbjct: 580 VVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIL----TATRPITKMIV 635

Query: 78  VPPGQIQIQGGQAVQ----------VQGQQGQTQQIIIQQPQT-AVTAGQTQTQQQIAVQ 126
             P  I    G  VQ          V GQQG+TQ +I  +P T   T    QT+Q +   
Sbjct: 636 TQPKGI----GSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTET 691

Query: 127 GQQVAQTAE 135
            QQ ++ AE
Sbjct: 692 LQQASRVAE 700


>gi|44890059 involucrin [Homo sapiens]
          Length = 585

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 18  QAGQIQ--QQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQI 75
           Q GQ++  +Q +GQP  ++   GQL     Q   ++ +   +GQ        G  GL + 
Sbjct: 309 QMGQLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQEGQLEHLEHQEGQLGLPEQ 368

Query: 76  QLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQ----TQTQQQIAVQGQQVA 131
           Q++   Q++ Q GQ   ++ ++GQ + ++ Q+ Q      Q     Q ++Q+    QQV 
Sbjct: 369 QVLQLKQLEKQQGQPKHLEEEEGQLKHLVQQEGQLKHLVQQEGQLEQQERQVEHLEQQVG 428

Query: 132 Q 132
           Q
Sbjct: 429 Q 429


>gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens]
          Length = 713

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 32  MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV 91
           ++Q +   L TS+GQ          QG  I Q PVS     Q IQ+     +     Q +
Sbjct: 280 ILQQNTNSLTTSSGQVHSSDL----QGNYI-QSPVSEETQAQNIQVSTAQPVV----QHL 330

Query: 92  QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL 151
           Q+Q  Q  T Q  I Q  T       QT   +   GQ ++Q A  Q +  Q +N    ++
Sbjct: 331 QLQESQQPTSQAQIVQGITP------QTIHGVQASGQNISQQAL-QNLQLQ-LNPGTFLI 382

Query: 152 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV 211
           Q  TV  SG +T     + G Q +Q       T++ Q T+T    +    V +GG     
Sbjct: 383 QAQTVTPSGQVTWQTFQVQGVQNLQ-NLQIQNTAAQQITLTPVQTLTLGQVAAGGAFTST 441

Query: 212 P---GAGSVPAIQRI 223
           P     G +P +Q +
Sbjct: 442 PVSLSTGQLPNLQTV 456


>gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens]
          Length = 781

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 32  MVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAV 91
           ++Q +   L TS+GQ          QG  I Q PVS     Q IQ+     +     Q +
Sbjct: 348 ILQQNTNSLTTSSGQVHSSDL----QGNYI-QSPVSEETQAQNIQVSTAQPVV----QHL 398

Query: 92  QVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTIL 151
           Q+Q  Q  T Q  I Q  T       QT   +   GQ ++Q A  Q +  Q +N    ++
Sbjct: 399 QLQESQQPTSQAQIVQGITP------QTIHGVQASGQNISQQAL-QNLQLQ-LNPGTFLI 450

Query: 152 QQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMV 211
           Q  TV  SG +T     + G Q +Q       T++ Q T+T    +    V +GG     
Sbjct: 451 QAQTVTPSGQVTWQTFQVQGVQNLQ-NLQIQNTAAQQITLTPVQTLTLGQVAAGGAFTST 509

Query: 212 P---GAGSVPAIQRI 223
           P     G +P +Q +
Sbjct: 510 PVSLSTGQLPNLQTV 524


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 51/215 (23%), Positives = 75/215 (34%), Gaps = 24/215 (11%)

Query: 21   QIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVP--------VSGTQGL 72
            Q  Q     P     S      S   P  ++A    Q  T  Q P         +G   L
Sbjct: 1488 QTSQASASAPRHQPASASSTAASPAHPAKLRAQTTAQASTPGQPPPQPQAPSHAAGQSAL 1547

Query: 73   QQIQLVPPGQIQ--IQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQV 130
             Q +LV P Q Q  +  G+ V++       Q   I  PQ+ V   +T    Q       +
Sbjct: 1548 PQ-RLVLPSQAQARLPSGEVVKI------AQLASITGPQSRVAQPETPVTLQFQGSKFTL 1600

Query: 131  AQTAEGQTIVYQPVNADGTILQQVTVP------VSGMITIPAASLAGAQIVQTGANTNTT 184
            + +   Q    QP+   G++LQ V+ P        G + +   S AGA     G+     
Sbjct: 1601 SHSQLRQLTAGQPLQLQGSVLQIVSAPGQPYLRAPGPVVMQTVSQAGAVHGALGSKPPAG 1660

Query: 185  SSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPA 219
                  +T  + V G V     + +  PG  S PA
Sbjct: 1661 GPSPAPLTPQVGVPGRVA-VNALAVGEPGTASKPA 1694



 Score = 38.1 bits (87), Expect = 0.010
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 13   EQIVVQAGQIQQQVQGQPLMVQ--VSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQ 70
            +Q V Q   IQ Q    P  VQ  ++  Q+ T   Q  +  A         +  P+S  Q
Sbjct: 2934 QQAVQQQKAIQPQAAQGPAAVQQKITAQQITTPGAQQKVAYAAQPALKTQFLTTPISQAQ 2993

Query: 71   GLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQV 130
                         ++ G Q VQ Q Q  +  Q++ QQ   A         QQ + Q   +
Sbjct: 2994 -------------KLAGAQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQASPQTVAL 3040

Query: 131  AQ-TAEGQTIVYQP-VNADGTILQQVTVPVSGMITIPA 166
             Q TA GQ +   P V A   ++QQ  +    + T  A
Sbjct: 3041 TQATAAGQQVQMIPAVTATAQVVQQKLIQQQVVTTASA 3078



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 55/191 (28%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 12   TEQIVVQAGQIQQQVQGQPLMVQVSG-GQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQ 70
            T Q+ VQ  Q  QQ   Q   V     G L+T T               T+  + V+   
Sbjct: 2807 TAQVQVQTSQPPQQQSPQLTTVTAPRPGALLTGT---------------TVANLQVA--- 2848

Query: 71   GLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQT-----AVTAGQTQTQQQIAV 125
               ++  VP  Q+Q QG    Q+Q Q  Q  Q+ + +P       AV +    T   + V
Sbjct: 2849 ---RLTRVPTSQLQAQG----QMQTQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNV 2901

Query: 126  QGQQVA----QTAEGQTIVYQPVNADGTI-LQQVTVPVSGMITIPAASLAGAQIVQTGAN 180
             G  VA    Q A GQT+V QPV+    + L+Q  V     I   AA    A   +  A 
Sbjct: 2902 AGISVAIGQPQKAAGQTVVAQPVHMQQLLKLKQQAVQQQKAIQPQAAQGPAAVQQKITAQ 2961

Query: 181  TNTTSSGQGTV 191
              TT   Q  V
Sbjct: 2962 QITTPGAQQKV 2972



 Score = 35.8 bits (81), Expect = 0.052
 Identities = 67/287 (23%), Positives = 109/287 (37%), Gaps = 28/287 (9%)

Query: 25  QVQGQPLMVQVSGG-QLITSTGQP-IMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVP-PG 81
           Q   QP +V+     Q+   T QP + + A P  Q      +P+  +Q  Q    VP PG
Sbjct: 575 QFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPPSSQ------LPIPPSQPAQLALHVPTPG 628

Query: 82  QIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVY 141
           ++Q+Q  Q   +      T+  +   P        + T     V G     +    + V 
Sbjct: 629 KVQVQASQLSSLPQMVASTRLPVDPAPPCPRPLPTSSTSSLAPVSGSGPGPSPARSSPVN 688

Query: 142 QPVNADGTILQQVTVPVSGMI-TIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGN 200
           +P +A    L  VT    G++ + P    + AQ       T++  S Q T+T  + +  N
Sbjct: 689 RPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNA-----TSSQDSSQDTLTEQITLE-N 742

Query: 201 VVNSGGMVMMVPGAGS---VPAIQRIPLPGAE---MLEEEPLYVNAKQYHRILKRRQAR- 253
            V+     +   G  S   +P +Q  P P +    +LEE           R  K   A+ 
Sbjct: 743 QVHQRIAELRKAGLWSQRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKK 802

Query: 254 -----AKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEK 295
                 +   E ++ +ER K   +SR R   A    E   F+S  E+
Sbjct: 803 LVRTVVRHHEEKQLREERGKKEEQSRLRRIAASTAREIECFWSNIEQ 849



 Score = 32.0 bits (71), Expect = 0.75
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 27   QGQPLMVQVSGGQLITSTGQPIMVQA---VPGGQGQTIMQVPVSGTQGLQQIQLVPPGQI 83
            QG   +  V+   ++T+   P+   A   VP     T +Q+P          + + P   
Sbjct: 2664 QGVRAVTSVTASAVVTTNLTPVQTPARSLVPQVSQATGVQLPG---------KTITPAHF 2714

Query: 84   QIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQP 143
            Q+   Q  Q Q QQ Q QQ   QQ Q      Q Q QQQ     Q      +GQ      
Sbjct: 2715 QLLRQQQQQQQQQQQQQQQQQQQQQQ------QQQQQQQTTTTSQVQVPQIQGQAQSPAQ 2768

Query: 144  VNADGTI 150
            + A G +
Sbjct: 2769 IKAVGKL 2775


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 47/151 (31%), Positives = 59/151 (39%), Gaps = 6/151 (3%)

Query: 5   TANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQV 64
           T  +    +Q+ +Q  Q QQQ Q Q    Q +  Q      Q    QA      Q    V
Sbjct: 148 TPQTQLQLQQVALQQQQQQQQFQQQ----QQAALQQQQQQQQQQQFQAQQSAMQQQFQAV 203

Query: 65  PVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQII-IQQPQTAVTAGQTQTQQQI 123
            V   Q LQQ Q      I++      Q+Q QQ Q Q+I  +Q  Q      Q Q QQQ 
Sbjct: 204 -VQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQ 262

Query: 124 AVQGQQVAQTAEGQTIVYQPVNADGTILQQV 154
           A+Q Q   Q    Q     P  A    LQQ+
Sbjct: 263 ALQAQPPIQQPPMQQPQPPPSQALPQQLQQM 293



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 52/172 (30%), Positives = 69/172 (40%), Gaps = 27/172 (15%)

Query: 18  QAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTI-----------MQVPV 66
           Q  Q QQQ Q Q L  Q    Q      QP   QA+P    Q              Q PV
Sbjct: 251 QQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPV 310

Query: 67  SGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQ--------IIIQQPQTAVTAGQTQ 118
           +  Q     QL P  Q Q    QA  + GQ   TQ         +++QQP       Q Q
Sbjct: 311 AQNQ---PSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPP---VQPQVQ 364

Query: 119 TQQQIAVQGQQVAQ-TAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASL 169
            QQQ AVQ  Q AQ  A G  ++ + +   G  ++    P + +  IP++S+
Sbjct: 365 -QQQTAVQTAQAAQMVAPGVQMITEALAQGGMHIRARFPPTTAVSAIPSSSI 415



 Score = 35.8 bits (81), Expect = 0.052
 Identities = 43/130 (33%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 16  VVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQI 75
           VV     Q Q+Q Q + +Q    Q      Q   +Q     Q Q   Q   S  Q  QQ 
Sbjct: 143 VVSTATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQ--QQF 200

Query: 76  QLVPPGQIQIQGGQAVQVQ--GQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQT 133
           Q V   Q Q+Q  Q  Q        Q QQ I QQ Q      Q Q QQQ   Q QQ  Q 
Sbjct: 201 QAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQ--QQQQQQQQQ 258

Query: 134 AEGQTIVYQP 143
            + Q +  QP
Sbjct: 259 QQQQALQAQP 268



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 32/101 (31%), Positives = 39/101 (38%)

Query: 42  TSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQ 101
           TS   P  +  V     QT +Q+     Q  QQ Q     Q      Q  Q Q QQ Q Q
Sbjct: 133 TSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQ 192

Query: 102 QIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQ 142
           Q  +QQ   AV   Q Q QQQ   Q   +    + Q  + Q
Sbjct: 193 QSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQ 233



 Score = 32.3 bits (72), Expect = 0.57
 Identities = 40/152 (26%), Positives = 54/152 (35%), Gaps = 28/152 (18%)

Query: 9   NSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQ--TIMQVPV 66
           N  ++  V       Q + G P       G      GQ +      G  GQ  ++   P 
Sbjct: 71  NKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQPP 130

Query: 67  SGTQGLQQIQLV------PPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQ 120
            GT G+    +       P  Q+Q+Q     QV  QQ Q QQ   QQ Q A+   Q Q Q
Sbjct: 131 PGTSGMAPHSMAVVSTATPQTQLQLQ-----QVALQQQQQQQQFQQQQQAALQQQQQQQQ 185

Query: 121 QQ---------------IAVQGQQVAQTAEGQ 137
           QQ               +  Q QQ+ Q  + Q
Sbjct: 186 QQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQ 217



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 15  IVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQ 74
           +VVQ   +Q QVQ Q   VQ +    + + G  ++ +A+  G      + P +       
Sbjct: 352 MVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQMITEALAQGGMHIRARFPPT-----TA 406

Query: 75  IQLVPPGQIQIQGGQAVQVQ------------GQQGQTQQIIIQQPQTAVTAGQTQTQ 120
           +  +P   I +      QV             GQQ QT Q +   PQ +   GQ  +Q
Sbjct: 407 VSAIPSSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQ 464



 Score = 29.6 bits (65), Expect = 3.7
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 35/132 (26%)

Query: 2   EQYTANSNSSTEQ---IVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQG 58
           +Q+ A  ++  +Q   +V Q  Q+QQQ Q Q  ++++                     Q 
Sbjct: 187 QQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHH-------------------QN 227

Query: 59  QTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQT-------QQIIIQQPQTA 111
           Q  +Q      Q  QQ+Q +   Q+Q Q  Q  Q Q QQ Q        QQ  +QQPQ  
Sbjct: 228 QQQIQ------QQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPP 281

Query: 112 VTAGQTQTQQQI 123
            +    Q  QQ+
Sbjct: 282 PSQALPQQLQQM 293


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.127    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,918,359
Number of Sequences: 37866
Number of extensions: 578261
Number of successful extensions: 2322
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 1827
Number of HSP's gapped (non-prelim): 469
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.