Guide to the Human Genome
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Name: NFYA Sequence: fasta or formatted (347aa) NCBI GI: 4505389
Description:

nuclear transcription factor Y, alpha isoform 1

Referenced in:

Homeobox and Related Proteins
RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [318aa] nuclear transcription factor Y, alpha isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         31           2
 C cysteine            0.0          0           0
 D aspartate           1.2          4           1
 E glutamate           4.6         16           3
 F phenylalanine       0.6          2           2
 G glycine            10.7         37           2
 H histidine           1.4          5           1
 I isoleucine          6.6         23           3
 K lysine              2.6          9           1
 L leucine             4.3         15           1
 M methionine          3.5         12           2
 N asparagine          2.6          9           1
 P proline             5.8         20           2
 Q glutamine          18.7         65           5
 R arginine            3.7         13           2
 S serine              5.2         18           2
 T threonine           7.8         27           2
 V valine             10.4         36           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear transcription factor Y, alpha isoform 1 [Homo... 
NFYA                  0.896   nuclear transcription factor Y, alpha isoform 2 [Hom...
NFYC                  0.053   nuclear transcription factor Y, gamma isoform 3 [Ho...
NFYC                  0.048   nuclear transcription factor Y, gamma isoform 4 [Ho...
NFYC                  0.048   nuclear transcription factor Y, gamma isoform 2 [Hom...
NFYC                  0.047   nuclear transcription factor Y, gamma isoform 1 [Ho...
NFYC                  0.042   nuclear transcription factor Y, gamma isoform 5 [Ho...
SP4                   0.042   Sp4 transcription factor 
MED15                 0.039   mediator complex subunit 15 isoform a 
MED15                 0.034   mediator complex subunit 15 isoform b 
BPTF                  0.034   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.034   bromodomain PHD finger transcription factor isoform ...
GTF2A1                0.033   TFIIA alpha, p55 isoform 2 
GTF2A1                0.033   TFIIA alpha, p55 isoform 1 
TRERF1                0.031   transcriptional regulating factor 1 
ZNF853                0.031   zinc finger protein 853 
C11orf30              0.029   EMSY protein 
MLL2                  0.029   myeloid/lymphoid or mixed-lineage leukemia 2 
EP400                 0.028   E1A binding protein p400 
TSC22D1               0.028   TSC22 domain family, member 1 isoform 1 
TCERG1                0.028   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.028   transcription elongation regulator 1 isoform 1 [Homo...
SP1                   0.026   Sp1 transcription factor isoform a 
SP1                   0.026   Sp1 transcription factor isoform b 
IVL                   0.026   involucrin 
SP2                   0.026   Sp2 transcription factor 
FOXP2                 0.025   forkhead box P2 isoform I 
SP3                   0.023   Sp3 transcription factor isoform 2 
SP3                   0.023   Sp3 transcription factor isoform 1 
FOXP2                 0.023   forkhead box P2 isoform II 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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