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Search of human proteins with 219521924
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219521924 DC-STAMP domain containing 1 isoform 1 [Homo
sapiens]
(706 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219521924 DC-STAMP domain containing 1 isoform 1 [Homo sapiens] 1444 0.0
gi|219521926 DC-STAMP domain containing 1 isoform 2 [Homo sapiens] 1381 0.0
gi|109240536 DC-STAMP domain containing 2 [Homo sapiens] 169 1e-41
gi|13540565 dendritic cell-specific transmembrane protein [Homo ... 70 7e-12
gi|239757512 PREDICTED: chromosome 20 open reading frame 123 [Ho... 40 0.010
gi|239752028 PREDICTED: hypothetical protein LOC128506 [Homo sap... 40 0.010
gi|239746512 PREDICTED: hypothetical protein LOC128506 [Homo sap... 40 0.010
gi|225637556 hypothetical protein LOC128506 [Homo sapiens] 40 0.010
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ... 33 1.2
gi|134031945 SCO-spondin [Homo sapiens] 32 1.5
gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens] 32 2.6
gi|109134327 PTD016 protein [Homo sapiens] 31 3.4
gi|219555718 synaptonemal complex central element protein 1 isof... 31 4.5
gi|219555716 synaptonemal complex central element protein 1 isof... 31 4.5
gi|18640754 synaptonemal complex central element protein 1 isofo... 31 4.5
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 31 4.5
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ... 30 5.9
gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo s... 30 5.9
gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapi... 30 7.7
gi|21361493 ring finger protein 141 [Homo sapiens] 30 7.7
>gi|219521924 DC-STAMP domain containing 1 isoform 1 [Homo sapiens]
Length = 706
Score = 1444 bits (3737), Expect = 0.0
Identities = 706/706 (100%), Positives = 706/706 (100%)
Query: 1 MDIKHHQNGTRGQRRKQPHTTVQRLLTWGLPVSCSWFLWRQPGEFPVTALLLGAGAGGLL 60
MDIKHHQNGTRGQRRKQPHTTVQRLLTWGLPVSCSWFLWRQPGEFPVTALLLGAGAGGLL
Sbjct: 1 MDIKHHQNGTRGQRRKQPHTTVQRLLTWGLPVSCSWFLWRQPGEFPVTALLLGAGAGGLL 60
Query: 61 AIGLFQLLVNPMNIYEEQKIMFLYSLVGLGAMGWGTSPHIRCASLLLVPKMLGKEGRLFV 120
AIGLFQLLVNPMNIYEEQKIMFLYSLVGLGAMGWGTSPHIRCASLLLVPKMLGKEGRLFV
Sbjct: 61 AIGLFQLLVNPMNIYEEQKIMFLYSLVGLGAMGWGTSPHIRCASLLLVPKMLGKEGRLFV 120
Query: 121 LGYALAAIYVGPVANLRHNLNNVIASLGCTVELQINNTRAAWRISTAPLRAMFKDLLSSK 180
LGYALAAIYVGPVANLRHNLNNVIASLGCTVELQINNTRAAWRISTAPLRAMFKDLLSSK
Sbjct: 121 LGYALAAIYVGPVANLRHNLNNVIASLGCTVELQINNTRAAWRISTAPLRAMFKDLLSSK 180
Query: 181 ELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREARQAPASRLHLSTQKMY 240
ELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREARQAPASRLHLSTQKMY
Sbjct: 181 ELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREARQAPASRLHLSTQKMY 240
Query: 241 ELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIWVPLLTHLLCLPMKFKFFCGIAKVME 300
ELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIWVPLLTHLLCLPMKFKFFCGIAKVME
Sbjct: 241 ELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIWVPLLTHLLCLPMKFKFFCGIAKVME 300
Query: 301 VWCRNRIPVEGNFGQTYDSLNQSIRGLDGEFSANIDFKEEKQAGVLGLNTSWERVSTEVR 360
VWCRNRIPVEGNFGQTYDSLNQSIRGLDGEFSANIDFKEEKQAGVLGLNTSWERVSTEVR
Sbjct: 301 VWCRNRIPVEGNFGQTYDSLNQSIRGLDGEFSANIDFKEEKQAGVLGLNTSWERVSTEVR 360
Query: 361 DYVYRQEARLEWALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR 420
DYVYRQEARLEWALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR
Sbjct: 361 DYVYRQEARLEWALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR 420
Query: 421 RKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWAL 480
RKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWAL
Sbjct: 421 RKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWAL 480
Query: 481 YSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTIGALNTSSETVMESNNMPCL 540
YSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTIGALNTSSETVMESNNMPCL
Sbjct: 481 YSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTIGALNTSSETVMESNNMPCL 540
Query: 541 PQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIAAFYFPKREKKRILFLYNDLLK 600
PQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIAAFYFPKREKKRILFLYNDLLK
Sbjct: 541 PQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIAAFYFPKREKKRILFLYNDLLK 600
Query: 601 KRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVC 660
KRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVC
Sbjct: 601 KRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVC 660
Query: 661 RTLDCEAVYCWSCWDDMRQRCPVCTPREELSSSAFSDSNDDTAYAG 706
RTLDCEAVYCWSCWDDMRQRCPVCTPREELSSSAFSDSNDDTAYAG
Sbjct: 661 RTLDCEAVYCWSCWDDMRQRCPVCTPREELSSSAFSDSNDDTAYAG 706
>gi|219521926 DC-STAMP domain containing 1 isoform 2 [Homo sapiens]
Length = 681
Score = 1381 bits (3575), Expect = 0.0
Identities = 681/706 (96%), Positives = 681/706 (96%), Gaps = 25/706 (3%)
Query: 1 MDIKHHQNGTRGQRRKQPHTTVQRLLTWGLPVSCSWFLWRQPGEFPVTALLLGAGAGGLL 60
MDIKHHQNGTRGQRRKQPHTTVQRLLTWGLPVSCSWFLWRQPGEFPVTALLLGAGAGGLL
Sbjct: 1 MDIKHHQNGTRGQRRKQPHTTVQRLLTWGLPVSCSWFLWRQPGEFPVTALLLGAGAGGLL 60
Query: 61 AIGLFQLLVNPMNIYEEQKIMFLYSLVGLGAMGWGTSPHIRCASLLLVPKMLGKEGRLFV 120
AIGL GAMGWGTSPHIRCASLLLVPKMLGKEGRLFV
Sbjct: 61 AIGL-------------------------GAMGWGTSPHIRCASLLLVPKMLGKEGRLFV 95
Query: 121 LGYALAAIYVGPVANLRHNLNNVIASLGCTVELQINNTRAAWRISTAPLRAMFKDLLSSK 180
LGYALAAIYVGPVANLRHNLNNVIASLGCTVELQINNTRAAWRISTAPLRAMFKDLLSSK
Sbjct: 96 LGYALAAIYVGPVANLRHNLNNVIASLGCTVELQINNTRAAWRISTAPLRAMFKDLLSSK 155
Query: 181 ELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREARQAPASRLHLSTQKMY 240
ELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREARQAPASRLHLSTQKMY
Sbjct: 156 ELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREARQAPASRLHLSTQKMY 215
Query: 241 ELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIWVPLLTHLLCLPMKFKFFCGIAKVME 300
ELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIWVPLLTHLLCLPMKFKFFCGIAKVME
Sbjct: 216 ELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIWVPLLTHLLCLPMKFKFFCGIAKVME 275
Query: 301 VWCRNRIPVEGNFGQTYDSLNQSIRGLDGEFSANIDFKEEKQAGVLGLNTSWERVSTEVR 360
VWCRNRIPVEGNFGQTYDSLNQSIRGLDGEFSANIDFKEEKQAGVLGLNTSWERVSTEVR
Sbjct: 276 VWCRNRIPVEGNFGQTYDSLNQSIRGLDGEFSANIDFKEEKQAGVLGLNTSWERVSTEVR 335
Query: 361 DYVYRQEARLEWALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR 420
DYVYRQEARLEWALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR
Sbjct: 336 DYVYRQEARLEWALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR 395
Query: 421 RKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWAL 480
RKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWAL
Sbjct: 396 RKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWAL 455
Query: 481 YSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTIGALNTSSETVMESNNMPCL 540
YSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTIGALNTSSETVMESNNMPCL
Sbjct: 456 YSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTIGALNTSSETVMESNNMPCL 515
Query: 541 PQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIAAFYFPKREKKRILFLYNDLLK 600
PQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIAAFYFPKREKKRILFLYNDLLK
Sbjct: 516 PQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIAAFYFPKREKKRILFLYNDLLK 575
Query: 601 KRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVC 660
KRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVC
Sbjct: 576 KRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVC 635
Query: 661 RTLDCEAVYCWSCWDDMRQRCPVCTPREELSSSAFSDSNDDTAYAG 706
RTLDCEAVYCWSCWDDMRQRCPVCTPREELSSSAFSDSNDDTAYAG
Sbjct: 636 RTLDCEAVYCWSCWDDMRQRCPVCTPREELSSSAFSDSNDDTAYAG 681
>gi|109240536 DC-STAMP domain containing 2 [Homo sapiens]
Length = 773
Score = 169 bits (427), Expect = 1e-41
Identities = 164/661 (24%), Positives = 271/661 (40%), Gaps = 52/661 (7%)
Query: 43 GEFPVTALLLGAGAGGLL-------AIGLFQLLVNPMNIYEEQKIMFLYSLVGLGAMGWG 95
GE P A + GG A GL +LLV + + ++ +L ++G G
Sbjct: 14 GEEPSMARAVVRSVGGFTLGLSLATAYGLLELLVEGHSPWG--CLVGTLTLAAFLSLGMG 71
Query: 96 TSPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYVGPVANLRHNLNNVIASLGCTVELQI 155
S +R LLL+P+ ++GR +L A + GP AN N ++ C EL +
Sbjct: 72 FSRQVRATVLLLLPQAFSRQGRTLLLVAAFGLVLQGPCANTLRNFTRASEAVACGAELAL 131
Query: 156 NNTRAAWRISTAPLRAMFKDLLSSKELLRAETRNISATFEDLDAQVNSETGYTPEDTMDS 215
N T + + PL + + + + + F + MD
Sbjct: 132 NQTAEVLQRAKQPLVSALNKIKAIARKTKEVADRVRKFFRSI---------------MD- 175
Query: 216 GETAQGREARQAPASRLHLSTQKMYELKTKLRCSYVVNQAILSCRRWFDRKHEQCMKHIW 275
G R R LH+ C+ + L C R FD + CM +
Sbjct: 176 GVKHIARALRNVWQWLLHIGDV----------CNSELGNPYLKCARVFDDAKDSCM--MV 223
Query: 276 VPLLTHLLCLPMKFKF-FCGIAKVMEVWCRNRIPVEGNFGQTYDS-LNQSIRGLDGEFSA 333
+P HL + M FK CG+A +++V+C ++ QT + + Q + + EF
Sbjct: 224 IPQAYHLCYVLMPFKLALCGLASLVQVFCVIPKYIQPFLRQTIGTPVIQLLNRVRQEFEF 283
Query: 334 NIDFKEEKQAGVLGLNTSWERVSTEVRDYVYRQEARLEWALGLLHVLLSCTFLLVLHASF 393
N+ L + S +V+ ++ + V + R+ AL L+ +L+ +
Sbjct: 284 NMTATHHFSVD-LNASRSLSQVAMDLHEAVSMKLHRVREALALMGFTTPLLLVLLYLQAL 342
Query: 394 SYMDSYNHDIRFDNIYISTYFCQIDDRRKKLGKRTLLPLRKAEEKTVIFPCKPTIQASEM 453
Y Y + +DNIYI++ F +++ R G T+LPL E + I P + E
Sbjct: 343 FYRYCYLNWDHYDNIYITSRFLRMEAVRSTAGLPTVLPLSAHEARRYIPPGSIFLSQWEK 402
Query: 454 SNVVRELLETLPILLLLVVLCGLDWALYSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSML 513
+ E + LLL++ L LD+A++ + D RH + RS + + V G
Sbjct: 403 FFYILETFNLIRHLLLVLFLVFLDYAVFWVLDLARHQLQGEIVARSPVLVSLTVEGTGYA 462
Query: 514 ARLLRKTIGALNTSSETVMESNNMPCLPQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYR 573
+ R + A + + + + CL +P D+ Y V GL + L ++ R
Sbjct: 463 GNIYRDLVSAFDVLQQGNISILSRRCLLRPSEPDSTGYIVIGVMYGLCFFITLFGSYVSR 522
Query: 574 LRRVIAAFYFPKREKKRILFLYNDLLKKRAAFTKLRRAAILRRERQQKAPRHPLADILHR 633
LRRVI A Y+P RE++RI +LYN LL +R ++ RR Q L +L
Sbjct: 523 LRRVICASYYPSREQERISYLYNVLLSRRTNLLAALHRSVRRRAADQGHRSAFL--VLAS 580
Query: 634 GCPLL-----RRWLCRR-CVVCQAP----ETPESYVCRTLDCEAVYCWSCWDDMRQRCPV 683
CP L WL + C+ C P + + C T C+ +YC +C+ + C V
Sbjct: 581 RCPCLGPFVSHFWLHQAYCLGCGQPQDEGDMENTVSCSTPGCQGLYCLTCFRLLDNTCSV 640
Query: 684 C 684
C
Sbjct: 641 C 641
>gi|13540565 dendritic cell-specific transmembrane protein [Homo
sapiens]
Length = 470
Score = 70.1 bits (170), Expect = 7e-12
Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 19/204 (9%)
Query: 404 RFDNIYISTYFCQIDDRRKKLGKRTLLPLRKAEE-KTVIFPCK-PTIQASEMSNVVRELL 461
+++NIYI+ F Q D+R + + +LPL K E K VI P PT E N+ L
Sbjct: 241 KYENIYITRQFVQFDERERHQQRPCVLPLNKEERRKYVIIPTFWPT--PKERKNLGLFFL 298
Query: 462 ETLPILLLLVVLCGLDWALYSIFDTIRHHSFLQYSFRSSHKLEVKVGGDSMLARLLRKTI 521
L L + V+ +D+ LY + ++ Q+ ++ +K+ G+ + T
Sbjct: 299 PILIHLCIWVLFAAVDYLLYRLIFSVSK----QFQSLPGFEVHLKLHGEK------QGTQ 348
Query: 522 GALNTSSE--TVMESNNMPCLPQPVGLDARAYWRAAVPIGLLVCLCLLQAFGYRLRRVIA 579
++ SS +V E N C+P+P L + + +V + +LV L LL + +L+ +++
Sbjct: 349 DIIHDSSFNISVFEPN---CIPKPKFLLSETWVPLSVILLILVMLGLLSSILMQLKILVS 405
Query: 580 AFYFPKREKKRILFLYNDLLKKRA 603
A ++P E+KRI +L+ LLKKR+
Sbjct: 406 ASFYPSVERKRIQYLHAKLLKKRS 429
Score = 33.9 bits (76), Expect = 0.53
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 97 SPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYVGPVANLRHNLNNVIASLGCTVE---- 152
S H RC LL+ +EGR ++ + +G V N+ HN ++ + C +
Sbjct: 75 SKHARCFILLVFLSCGLREGRNALIAAGTGIVILGHVENIFHNFKGLLDGMTCNLRAKSF 134
Query: 153 ------LQINNTRAAWRISTAPLRAMFKDLLSSKELLRAETRNISATFEDLDAQVNSETG 206
L+ W A ++F DL+S + L ++ + L+AQ+N G
Sbjct: 135 SIHFPLLKKYIEAIQWIYGLATPLSVFDDLVSWNQTLAV---SLFSPSHVLEAQLNDSKG 191
>gi|239757512 PREDICTED: chromosome 20 open reading frame 123 [Homo
sapiens]
Length = 560
Score = 39.7 bits (91), Expect = 0.010
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 31 PVSCSWFLWRQP-----GEFPVTALL---LGAGAGGLLAIGLFQLLVNPMNIYEEQKIMF 82
P+ +W + QP G+ LL L A A GL+ L LL +Y
Sbjct: 23 PLQAAWDAFSQPVPASCGQLLTQLLLCASLAAAAAGLVYHWLASLL-----LYPPGPSAM 77
Query: 83 LYSLVGLGA-MGWGTSPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYVGPVANLRHNLN 141
+ ++ GL + G P +RC L VP + ++GR +L Y+ A + + V N+ N+
Sbjct: 78 VATVCGLLVFLSLGLVPPVRCLFALSVPTLGMEQGRRLLLSYSTATLAIAVVPNVLANVG 137
Query: 142 NVIASLGCTVE 152
L C E
Sbjct: 138 AAGQVLRCVTE 148
Score = 37.0 bits (84), Expect = 0.063
Identities = 92/357 (25%), Positives = 130/357 (36%), Gaps = 90/357 (25%)
Query: 373 ALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDRRKKLGKRTLLPL 432
ALG V+ L +L S Y+ Y D+RFDNIY + Q L
Sbjct: 216 ALGTQRVVTGLFMLGLLVESAWYLHCYLTDLRFDNIYATQQLTQ--------------RL 261
Query: 433 RKAEEKTVIFPCKPT--IQASEMSNVVRELLETLPILLLLVVLCGLDWALYSIFDTIRHH 490
+A+ ++ P PT +QA+++ ELL L L LL +L ++ H
Sbjct: 262 AQAQATHLLAP-PPTWLLQAAQLRLSQEELLSCLLRLGLLALLL----VATAVAVATDHV 316
Query: 491 SFL--QYSFRSSHKLEVK--------------VGGDSMLARLLRKTIGALNTSS----ET 530
+FL Q + + KL +G L L L+ S E
Sbjct: 317 AFLLAQATVDWAQKLPTVPITLTVKYDVAYTVLGFIPFLFNQLAPESPFLSVHSSYQWEL 376
Query: 531 VMESNNMPCLPQPVGLDARAYWRAAVPI--GLLVCLC----LLQAFGYRLRRVIAAFYFP 584
+ S P LP AR RAA P+ G L L LL+A+ RLR IAA +F
Sbjct: 377 RLTSARCPLLP------ARRP-RAAAPLAAGALQLLAGSTVLLEAYARRLRHAIAASFFT 429
Query: 585 KREKKRILFLYNDLLKKRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCR 644
+E +R+ L+ A + RR + + + PL D C R C+
Sbjct: 430 AQEARRVRHLH---------------ARLQRRHDRHQGQQLPLGD---PSCVPTPRPACK 471
Query: 645 RCVVCQAPETPESYVCRTLDC--------EAVYCWSCWDDMRQRCPVCTPREELSSS 693
P +++ LD E WSC D PV P L S
Sbjct: 472 ----------PPAWIDYRLDALRTESSEGEGKELWSCRDLSCNLGPVPPPCVTLGKS 518
>gi|239752028 PREDICTED: hypothetical protein LOC128506 [Homo
sapiens]
Length = 560
Score = 39.7 bits (91), Expect = 0.010
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 31 PVSCSWFLWRQP-----GEFPVTALL---LGAGAGGLLAIGLFQLLVNPMNIYEEQKIMF 82
P+ +W + QP G+ LL L A A GL+ L LL +Y
Sbjct: 23 PLQAAWDAFSQPVPASCGQLLTQLLLCASLAAAAAGLVYHWLASLL-----LYPPGPSAM 77
Query: 83 LYSLVGLGA-MGWGTSPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYVGPVANLRHNLN 141
+ ++ GL + G P +RC L VP + ++GR +L Y+ A + + V N+ N+
Sbjct: 78 VATVCGLLVFLSLGLVPPVRCLFALSVPTLGMEQGRRLLLSYSTATLAIAVVPNVLANVG 137
Query: 142 NVIASLGCTVE 152
L C E
Sbjct: 138 AAGQVLRCVTE 148
Score = 37.0 bits (84), Expect = 0.063
Identities = 92/357 (25%), Positives = 130/357 (36%), Gaps = 90/357 (25%)
Query: 373 ALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDRRKKLGKRTLLPL 432
ALG V+ L +L S Y+ Y D+RFDNIY + Q L
Sbjct: 216 ALGTQRVVTGLFMLGLLVESAWYLHCYLTDLRFDNIYATQQLTQ--------------RL 261
Query: 433 RKAEEKTVIFPCKPT--IQASEMSNVVRELLETLPILLLLVVLCGLDWALYSIFDTIRHH 490
+A+ ++ P PT +QA+++ ELL L L LL +L ++ H
Sbjct: 262 AQAQATHLLAP-PPTWLLQAAQLRLSQEELLSCLLRLGLLALLL----VATAVAVATDHV 316
Query: 491 SFL--QYSFRSSHKLEVK--------------VGGDSMLARLLRKTIGALNTSS----ET 530
+FL Q + + KL +G L L L+ S E
Sbjct: 317 AFLLAQATVDWAQKLPTVPITLTVKYDVAYTVLGFIPFLFNQLAPESPFLSVHSSYQWEL 376
Query: 531 VMESNNMPCLPQPVGLDARAYWRAAVPI--GLLVCLC----LLQAFGYRLRRVIAAFYFP 584
+ S P LP AR RAA P+ G L L LL+A+ RLR IAA +F
Sbjct: 377 RLTSARCPLLP------ARRP-RAAAPLAAGALQLLAGSTVLLEAYARRLRHAIAASFFT 429
Query: 585 KREKKRILFLYNDLLKKRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCR 644
+E +R+ L+ A + RR + + + PL D C R C+
Sbjct: 430 AQEARRVRHLH---------------ARLQRRHDRHQGQQLPLGD---PSCVPTPRPACK 471
Query: 645 RCVVCQAPETPESYVCRTLDC--------EAVYCWSCWDDMRQRCPVCTPREELSSS 693
P +++ LD E WSC D PV P L S
Sbjct: 472 ----------PPAWIDYRLDALRTESSEGEGKELWSCRDLSCNLGPVPPPCVTLGKS 518
>gi|239746512 PREDICTED: hypothetical protein LOC128506 [Homo
sapiens]
Length = 560
Score = 39.7 bits (91), Expect = 0.010
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 31 PVSCSWFLWRQP-----GEFPVTALL---LGAGAGGLLAIGLFQLLVNPMNIYEEQKIMF 82
P+ +W + QP G+ LL L A A GL+ L LL +Y
Sbjct: 23 PLQAAWDAFSQPVPASCGQLLTQLLLCASLAAAAAGLVYHWLASLL-----LYPPGPSAM 77
Query: 83 LYSLVGLGA-MGWGTSPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYVGPVANLRHNLN 141
+ ++ GL + G P +RC L VP + ++GR +L Y+ A + + V N+ N+
Sbjct: 78 VATVCGLLVFLSLGLVPPVRCLFALSVPTLGMEQGRRLLLSYSTATLAIAVVPNVLANVG 137
Query: 142 NVIASLGCTVE 152
L C E
Sbjct: 138 AAGQVLRCVTE 148
Score = 37.0 bits (84), Expect = 0.063
Identities = 92/357 (25%), Positives = 130/357 (36%), Gaps = 90/357 (25%)
Query: 373 ALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDRRKKLGKRTLLPL 432
ALG V+ L +L S Y+ Y D+RFDNIY + Q L
Sbjct: 216 ALGTQRVVTGLFMLGLLVESAWYLHCYLTDLRFDNIYATQQLTQ--------------RL 261
Query: 433 RKAEEKTVIFPCKPT--IQASEMSNVVRELLETLPILLLLVVLCGLDWALYSIFDTIRHH 490
+A+ ++ P PT +QA+++ ELL L L LL +L ++ H
Sbjct: 262 AQAQATHLLAP-PPTWLLQAAQLRLSQEELLSCLLRLGLLALLL----VATAVAVATDHV 316
Query: 491 SFL--QYSFRSSHKLEVK--------------VGGDSMLARLLRKTIGALNTSS----ET 530
+FL Q + + KL +G L L L+ S E
Sbjct: 317 AFLLAQATVDWAQKLPTVPITLTVKYDVAYTVLGFIPFLFNQLAPESPFLSVHSSYQWEL 376
Query: 531 VMESNNMPCLPQPVGLDARAYWRAAVPI--GLLVCLC----LLQAFGYRLRRVIAAFYFP 584
+ S P LP AR RAA P+ G L L LL+A+ RLR IAA +F
Sbjct: 377 RLTSARCPLLP------ARRP-RAAAPLAAGALQLLAGSTVLLEAYARRLRHAIAASFFT 429
Query: 585 KREKKRILFLYNDLLKKRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCR 644
+E +R+ L+ A + RR + + + PL D C R C+
Sbjct: 430 AQEARRVRHLH---------------ARLQRRHDRHQGQQLPLGD---PSCVPTPRPACK 471
Query: 645 RCVVCQAPETPESYVCRTLDC--------EAVYCWSCWDDMRQRCPVCTPREELSSS 693
P +++ LD E WSC D PV P L S
Sbjct: 472 ----------PPAWIDYRLDALRTESSEGEGKELWSCRDLSCNLGPVPPPCVTLGKS 518
>gi|225637556 hypothetical protein LOC128506 [Homo sapiens]
Length = 566
Score = 39.7 bits (91), Expect = 0.010
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 31 PVSCSWFLWRQP-----GEFPVTALL---LGAGAGGLLAIGLFQLLVNPMNIYEEQKIMF 82
P+ +W + QP G+ LL L A A GL+ L LL +Y
Sbjct: 29 PLQAAWDAFSQPVPASCGQLLTQLLLCASLAAAAAGLVYHWLASLL-----LYPPGPSAM 83
Query: 83 LYSLVGLGA-MGWGTSPHIRCASLLLVPKMLGKEGRLFVLGYALAAIYVGPVANLRHNLN 141
+ ++ GL + G P +RC L VP + ++GR +L Y+ A + + V N+ N+
Sbjct: 84 VATVCGLLVFLSLGLVPPVRCLFALSVPTLGMEQGRRLLLSYSTATLAIAVVPNVLANVG 143
Query: 142 NVIASLGCTVE 152
L C E
Sbjct: 144 AAGQVLRCVTE 154
Score = 37.0 bits (84), Expect = 0.063
Identities = 92/357 (25%), Positives = 130/357 (36%), Gaps = 90/357 (25%)
Query: 373 ALGLLHVLLSCTFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDRRKKLGKRTLLPL 432
ALG V+ L +L S Y+ Y D+RFDNIY + Q L
Sbjct: 222 ALGTQRVVTGLFMLGLLVESAWYLHCYLTDLRFDNIYATQQLTQ--------------RL 267
Query: 433 RKAEEKTVIFPCKPT--IQASEMSNVVRELLETLPILLLLVVLCGLDWALYSIFDTIRHH 490
+A+ ++ P PT +QA+++ ELL L L LL +L ++ H
Sbjct: 268 AQAQATHLLAP-PPTWLLQAAQLRLSQEELLSCLLRLGLLALLL----VATAVAVATDHV 322
Query: 491 SFL--QYSFRSSHKLEVK--------------VGGDSMLARLLRKTIGALNTSS----ET 530
+FL Q + + KL +G L L L+ S E
Sbjct: 323 AFLLAQATVDWAQKLPTVPITLTVKYDVAYTVLGFIPFLFNQLAPESPFLSVHSSYQWEL 382
Query: 531 VMESNNMPCLPQPVGLDARAYWRAAVPI--GLLVCLC----LLQAFGYRLRRVIAAFYFP 584
+ S P LP AR RAA P+ G L L LL+A+ RLR IAA +F
Sbjct: 383 RLTSARCPLLP------ARRP-RAAAPLAAGALQLLAGSTVLLEAYARRLRHAIAASFFT 435
Query: 585 KREKKRILFLYNDLLKKRAAFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCR 644
+E +R+ L+ A + RR + + + PL D C R C+
Sbjct: 436 AQEARRVRHLH---------------ARLQRRHDRHQGQQLPLGD---PSCVPTPRPACK 477
Query: 645 RCVVCQAPETPESYVCRTLDC--------EAVYCWSCWDDMRQRCPVCTPREELSSS 693
P +++ LD E WSC D PV P L S
Sbjct: 478 ----------PPAWIDYRLDALRTESSEGEGKELWSCRDLSCNLGPVPPPCVTLGKS 524
>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
sapiens]
Length = 564
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 636 PLLRRWLCRRCVVCQA--PETPESYVCRTLDCEAVYCWSCWDDMRQRCPVCTPR 687
P+ RW CRR V+C P+TP+ + + W M+ R PVCT R
Sbjct: 409 PVCTRWCCRRLVLCVKLFPQTPQW-------DDHLKARPHWPQMKARRPVCTLR 455
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 641 WLCRRCVVCQAPETPESYVCRTLDC---EAVYCWSCWDDMRQRCPV 683
WL C C TPE +C +C EA WS W D CPV
Sbjct: 4228 WLQGECQRCSC--TPEGVICEDTECAVPEAWTLWSSWSD----CPV 4267
>gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]
Length = 113
Score = 31.6 bits (70), Expect = 2.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 635 CPLLRRWLCRRCVVCQAPETPESYVCRTLDCEAVY---CWSCWDDMRQRCPVC 684
C + R + C+ CQA E V +C + C S W RCP+C
Sbjct: 50 CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 102
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 646 CVVCQAP-ETPESYVCRTLDCEAVYCWSCWDDMRQRCPVC 684
C +CQA + P +C+ + CE C + W + + CP+C
Sbjct: 375 CSICQAEFQKPILLICQHIFCEE--CMTLWFNREKTCPLC 412
>gi|219555718 synaptonemal complex central element protein 1 isoform
4 [Homo sapiens]
Length = 351
Score = 30.8 bits (68), Expect = 4.5
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 178 SSKELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREA 224
SSKE L E + + AT ED+ Q+ S G T+D G + +EA
Sbjct: 190 SSKEQLLKEEKLVKATLEDVKHQLCSLCGAEGPSTLDEGLFLRSQEA 236
>gi|219555716 synaptonemal complex central element protein 1 isoform
3 [Homo sapiens]
Length = 318
Score = 30.8 bits (68), Expect = 4.5
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 178 SSKELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREA 224
SSKE L E + + AT ED+ Q+ S G T+D G + +EA
Sbjct: 190 SSKEQLLKEEKLVKATLEDVKHQLCSLCGAEGPSTLDEGLFLRSQEA 236
>gi|18640754 synaptonemal complex central element protein 1 isoform
1 [Homo sapiens]
Length = 282
Score = 30.8 bits (68), Expect = 4.5
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 178 SSKELLRAETRNISATFEDLDAQVNSETGYTPEDTMDSGETAQGREA 224
SSKE L E + + AT ED+ Q+ S G T+D G + +EA
Sbjct: 154 SSKEQLLKEEKLVKATLEDVKHQLCSLCGAEGPSTLDEGLFLRSQEA 200
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 30.8 bits (68), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 646 CVVCQAP-ETPESYVCRTLDCEAVYCWSCWDDMRQRCPVC 684
C +CQA P +C+ + CE C W D + CP+C
Sbjct: 384 CAICQAEFREPLILLCQHVFCEECLC--LWLDRERTCPLC 421
>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
Length = 522
Score = 30.4 bits (67), Expect = 5.9
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 636 PLLRRWLCRRCVVCQ--APETPESYVCRTLDCEAVYCWSCWDDMRQ 679
P+ RW CRR VC P+TP+++ + C W R+
Sbjct: 329 PVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASRE 374
>gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo
sapiens]
Length = 1977
Score = 30.4 bits (67), Expect = 5.9
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 384 TFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR-----RKKLGKRTLLPLRKAEEK 438
T++ +L ++ +Y + F N + F +D LG L P++
Sbjct: 1223 TYIFILEMLLKWI-AYGYKTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTL 1281
Query: 439 TVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWALYSI 483
+ P + + M VV L+ +P ++ ++++C + W ++SI
Sbjct: 1282 RALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSI 1326
>gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapiens]
Length = 1836
Score = 30.0 bits (66), Expect = 7.7
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 384 TFLLVLHASFSYMDSYNHDIRFDNIYISTYFCQIDDR-----RKKLGKRTLLPLRKAEEK 438
T++ ++ ++ +Y + F N + F +D LG L P++
Sbjct: 1073 TYIFIMEMLLKWV-AYGFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTL 1131
Query: 439 TVIFPCKPTIQASEMSNVVRELLETLPILLLLVVLCGLDWALYSI 483
+ P + + M VV LL +P ++ ++++C + W ++SI
Sbjct: 1132 RALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSI 1176
>gi|21361493 ring finger protein 141 [Homo sapiens]
Length = 230
Score = 30.0 bits (66), Expect = 7.7
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 35/150 (23%)
Query: 545 GLDARAYWRAAVPIGLLVCLCLLQAFGY-RLRRVIAAFYFPKREKKRILFLYNDLLKKRA 603
G D+ A+W+ V + VC + ++ G R++ + F + LY D+ + A
Sbjct: 67 GSDSSAFWKVVVRV---VCTKINKSSGIVEASRIMNLYQF--------IQLYKDITSQAA 115
Query: 604 AFTKLRRAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVCQAPETPESYVCRT- 662
+L + + P + + L W+ R V Q + E +C
Sbjct: 116 G--------VLAQSSTSEEPDENSSSVTSCQASL---WMGR---VKQLTDEEECCICMDG 161
Query: 663 -----LDCEAVYCWSC---WDDMRQRCPVC 684
L C +C C W D + CP+C
Sbjct: 162 RADLILPCAHSFCQKCIDKWSDRHRNCPIC 191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,862,892
Number of Sequences: 37866
Number of extensions: 1205130
Number of successful extensions: 3663
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3630
Number of HSP's gapped (non-prelim): 39
length of query: 706
length of database: 18,247,518
effective HSP length: 109
effective length of query: 597
effective length of database: 14,120,124
effective search space: 8429714028
effective search space used: 8429714028
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.