Guide to the Human Genome
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Name: TM7SF4 Sequence: fasta or formatted (470aa) NCBI GI: 13540565
Description:

dendritic cell-specific transmembrane protein

Referenced in:

Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         25           4
 C cysteine            2.8         13           2
 D aspartate           2.6         12           2
 E glutamate           4.0         19           2
 F phenylalanine       6.0         28           2
 G glycine             5.5         26           1
 H histidine           2.8         13           1
 I isoleucine          7.9         37           2
 K lysine              6.4         30           2
 L leucine            16.0         75           2
 M methionine          2.1         10           1
 N asparagine          2.3         11           1
 P proline             4.5         21           1
 Q glutamine           3.8         18           2
 R arginine            4.3         20           2
 S serine              8.3         39           2
 T threonine           3.6         17           3
 V valine              6.8         32           1
 W tryptophan          2.6         12           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dendritic cell-specific transmembrane protein 
DCST2                 0.049   DC-STAMP domain containing 2 
DCST1                 0.049   DC-STAMP domain containing 1 isoform 2 
DCST1                 0.049   DC-STAMP domain containing 1 isoform 1 
C20orf123             0.026   PREDICTED: chromosome 20 open reading frame 123 [Ho...
C20orf123             0.026   PREDICTED: hypothetical protein LOC128506 
C20orf123             0.026   PREDICTED: hypothetical protein LOC128506 
C20orf123             0.026   hypothetical protein LOC128506 
SLC35A3               0.008   solute carrier family 35 member 3A 
SLC44A2               0.005   solute carrier family 44, member 2 isoform 1 
SLC44A2               0.005   solute carrier family 44, member 2 isoform 2 
SEC61A2               0.005   Sec61 alpha form 2 isoform b 
SEC61A2               0.005   Sec61 alpha form 2 isoform c 
SEC61A2               0.005   Sec61 alpha form 2 isoform a 
UBR3                  0.005   E3 ubiquitin-protein ligase UBR3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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