Guide to the Human Genome
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Name: DCST1 Sequence: fasta or formatted (706aa) NCBI GI: 219521924
Description:

DC-STAMP domain containing 1 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {681aa} DC-STAMP domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         52           2
 C cysteine            3.7         26           1
 D aspartate           4.0         28           2
 E glutamate           5.4         38           2
 F phenylalanine       4.0         28           2
 G glycine             5.5         39           2
 H histidine           2.4         17           2
 I isoleucine          4.4         31           1
 K lysine              4.7         33           2
 L leucine            13.6         96           4
 M methionine          2.4         17           1
 N asparagine          3.5         25           2
 P proline             4.2         30           1
 Q glutamine           3.8         27           2
 R arginine            8.5         60           2
 S serine              6.2         44           3
 T threonine           5.1         36           2
 V valine              5.8         41           2
 W tryptophan          2.1         15           1
 Y tyrosine            3.3         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DC-STAMP domain containing 1 isoform 1 
DCST1                 0.956   DC-STAMP domain containing 1 isoform 2 
DCST2                 0.101   DC-STAMP domain containing 2 
TM7SF4                0.032   dendritic cell-specific transmembrane protein 
C20orf123             0.011   PREDICTED: chromosome 20 open reading frame 123 [Ho...
C20orf123             0.011   PREDICTED: hypothetical protein LOC128506 
C20orf123             0.011   PREDICTED: hypothetical protein LOC128506 
C20orf123             0.011   hypothetical protein LOC128506 
LOC100291995          0.006   PREDICTED: hypothetical protein XP_002345272 
SSPO                  0.005   SCO-spondin 
RNF7                  0.005   ring finger protein 7 isoform 1 
RNFT1                 0.004   PTD016 protein 
SYCE1                 0.004   synaptonemal complex central element protein 1 isof...
SYCE1                 0.004   synaptonemal complex central element protein 1 isof...
SYCE1                 0.004   synaptonemal complex central element protein 1 isofo...
RNFT2                 0.004   transmembrane protein 118 isoform 1 
LOC100288302          0.004   PREDICTED: hypothetical protein XP_002343738 
SCN9A                 0.004   sodium channel, voltage-gated, type IX, alpha 
SCN4A                 0.004   voltage-gated sodium channel type 4 alpha 
RNF141                0.004   ring finger protein 141 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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