Guide to the Human Genome
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Name: FLJ16686 Sequence: fasta or formatted (616aa) NCBI GI: 218563746
Description:

hypothetical protein LOC401124

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         22           1
 C cysteine            2.4         15           1
 D aspartate           4.5         28           2
 E glutamate           5.8         36           2
 F phenylalanine       3.9         24           1
 G glycine             4.4         27           2
 H histidine           3.1         19           1
 I isoleucine          6.0         37           2
 K lysine              8.3         51           2
 L leucine            12.2         75           3
 M methionine          1.1          7           1
 N asparagine          4.4         27           2
 P proline             6.2         38           2
 Q glutamine           4.2         26           2
 R arginine            4.7         29           2
 S serine              9.1         56           2
 T threonine           4.9         30           2
 V valine              7.3         45           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.1         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC401124 
ANK2                  0.030   ankyrin 2 isoform 3 
ANK2                  0.030   ankyrin 2 isoform 2 
ANK3                  0.029   ankyrin 3 isoform 2 
ANK3                  0.025   ankyrin 3 isoform 1 
LRDD                  0.025   leucine rich repeat and death domain containing prot...
LRDD                  0.024   leucine rich repeat and death domain containing prot...
ANK2                  0.020   ankyrin 2 isoform 1 
LRDD                  0.020   leucine rich repeat and death domain containing prot...
ANK1                  0.016   ankyrin 1 isoform 9 
ANK1                  0.016   ankyrin 1 isoform 1 
ANK1                  0.016   ankyrin 1 isoform 3 
ANK1                  0.016   ankyrin 1 isoform 2 
ANK1                  0.016   ankyrin 1 isoform 4 
RAB35                 0.006   RAB35, member RAS oncogene family 
SLC20A1               0.005   solute carrier family 20 (phosphate transporter), me...
FAM160A1              0.004   hypothetical protein LOC729830 
LOC100132713          0.004   PREDICTED: similar to hCG1654128 
LOC100132713          0.004   PREDICTED: similar to hCG1654128 
LOC100132713          0.004   PREDICTED: similar to hCG1654128 
PEX1                  0.004   peroxin1 
DDX1                  0.004   DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 
HDAC6                 0.004   histone deacetylase 6 
RNASEN                0.004   ribonuclease III, nuclear isoform 2 
RNASEN                0.004   ribonuclease III, nuclear isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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