Guide to the Human Genome
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Name: SLC20A1 Sequence: fasta or formatted (679aa) NCBI GI: 31543630
Description:

solute carrier family 20 (phosphate transporter), member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         51           2
 C cysteine            1.9         13           1
 D aspartate           4.0         27           1
 E glutamate           5.0         34           2
 F phenylalanine       4.4         30           2
 G glycine             8.5         58           2
 H histidine           1.8         12           1
 I isoleucine          6.6         45           2
 K lysine              5.4         37           2
 L leucine            10.5         71           3
 M methionine          3.1         21           1
 N asparagine          3.1         21           2
 P proline             4.0         27           1
 Q glutamine           2.2         15           1
 R arginine            3.2         22           2
 S serine              9.7         66           2
 T threonine           5.2         35           2
 V valine              9.4         64           2
 W tryptophan          2.1         14           1
 Y tyrosine            2.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 20 (phosphate transporter), me... 
SLC20A2               0.548   solute carrier family 20, member 2 
NBPF3                 0.006   neuroblastoma breakpoint family, member 3 
MAP1B                 0.006   microtubule-associated protein 1B 
SLK                   0.006   serine/threonine kinase 2 
ESRP1                 0.005   RNA binding motif protein 35A isoform 5 
ESRP1                 0.005   RNA binding motif protein 35A isoform 3 
ESRP1                 0.005   RNA binding motif protein 35A isoform 4 
ESRP1                 0.005   RNA binding motif protein 35A isoform 2 
ESRP1                 0.005   RNA binding motif protein 35A isoform 1 
SLC5A6                0.005   solute carrier family 5 (sodium-dependent vitamin tr...
SLC16A1               0.005   solute carrier family 16, member 1 
FLJ16686              0.005   hypothetical protein LOC401124 
SLC5A12               0.005   solute carrier family 5 (sodium/glucose cotransport...
GTF2IRD2              0.005   GTF2I repeat domain containing 2 
GTF2IRD2B             0.005   GTF2I repeat domain containing 2B 
ZNF326                0.005   zinc finger protein 326 isoform 1 
DOCK6                 0.004   dedicator of cytokinesis 6 
NEFM                  0.004   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.004   neurofilament, medium polypeptide 150kDa isoform 2 ...
TAX1BP1               0.004   Tax1 (human T-cell leukemia virus type I) binding p...
TAX1BP1               0.004   Tax1 (human T-cell leukemia virus type I) binding pr...
SLC4A1AP              0.004   solute carrier family 4 (anion exchanger), member 1...
FLJ37078              0.004   hypothetical protein LOC222183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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